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RibDif.yml
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RibDif.yml
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name: RibDif
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- appdirs=1.4.4=pyh9f0ad1d_0
- barrnap=0.9=2
- bedtools=2.30.0=h468198e_3
- binutils_impl_linux-64=2.40=hf600244_0
- biopython=1.80=py311hd4cff14_0
- blast=2.5.0=hc0b0e79_3
- blast-legacy=2.2.26=h9ee0642_3
- blosc=1.21.3=hafa529b_0
- boost=1.78.0=py311h59ea3da_4
- boost-cpp=1.78.0=h75c5d50_1
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py311hd4cff14_1005
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2024.7.2=h06a4308_0
- cairo=1.16.0=ha61ee94_1014
- certifi=2024.7.4=py311h06a4308_0
- cffi=1.15.1=py311h409f033_3
- cfitsio=4.2.0=hd9d235c_0
- charset-normalizer=2.1.1=pyhd8ed1ab_0
- colorama=0.4.6=pyhd8ed1ab_0
- contourpy=1.0.7=py311ha3edf6b_0
- cryptography=39.0.1=py311h9b4c7bb_0
- curl=7.87.0=hdc1c0ab_0
- cycler=0.11.0=pyhd8ed1ab_0
- expat=2.5.0=h27087fc_0
- fasttree=2.1.11=hec16e2b_1
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.38.0=py311hd4cff14_1
- freetype=2.12.1=hca18f0e_1
- freexl=1.0.6=h166bdaf_1
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- gdbm=1.18=h0a1914f_2
- geos=3.11.1=h27087fc_0
- geotiff=1.7.1=h7157cca_5
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=12.2.0=h55be85b_19
- giflib=5.2.1=h36c2ea0_2
- glpk=5.0=h445213a_0
- gmp=6.2.1=h58526e2_0
- graphite2=1.3.14=h295c915_1
- gsl=2.7.1=h6e86dc7_1
- gxx_impl_linux-64=12.2.0=hcc96c02_19
- harfbuzz=6.0.0=h8e241bc_0
- hdf4=4.2.15=h9772cbc_5
- hdf5=1.12.2=nompi_h4df4325_101
- hmmer=3.3.2=h87f3376_2
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- json-c=0.16=hc379101_0
- kealib=1.5.0=ha7026e8_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py311h4dd048b_1
- krb5=1.20.1=h81ceb04_0
- lcms2=2.14=hfd0df8a_1
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libaec=1.0.6=hcb278e6_1
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=16_linux64_openblas
- libcurl=7.87.0=hdc1c0ab_0
- libdeflate=1.17=h0b41bf4_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h516909a_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgdal=3.6.2=h10cbb15_3
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.74.1=h606061b_1
- libgomp=12.2.0=h65d4601_19
- libiconv=1.17=h166bdaf_0
- libkml=1.3.0=h37653c0_1015
- liblapack=3.9.0=16_linux64_openblas
- libnetcdf=4.8.1=nompi_h261ec11_106
- libnghttp2=1.51.0=hff17c54_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libpq=15.2=hb675445_0
- librttopo=1.1.0=ha49c73b_12
- libsanitizer=12.2.0=h46fd767_19
- libspatialite=5.0.1=h7c8129e_22
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=hf14f497_3
- libstdcxx-devel_linux-64=12.2.0=h3b97bd3_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.5.0=h6adf6a1_2
- libuuid=2.32.1=h7f98852_1000
- libwebp-base=1.2.4=h166bdaf_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=h7463322_0
- libzip=1.9.2=hc929e4a_1
- libzlib=1.2.13=h166bdaf_4
- lz4-c=1.9.4=hcb278e6_0
- mafft=7.515=hec16e2b_0
- make=4.3=hd18ef5c_1
- matplotlib-base=3.7.0=py311h8597a09_0
- mummer=3.23=4
- munkres=1.1.4=pyh9f0ad1d_0
- muscle=5.1=h9f5acd7_1
- ncbi-genome-download=0.3.3=pyh7cba7a3_0
- ncurses=6.4=h6a678d5_0
- nspr=4.35=h27087fc_0
- nss=3.88=he45b914_0
- numpy=1.24.2=py311h8e6699e_0
- openjpeg=2.5.0=hfec8fc6_2
- openssl=3.0.14=h5eee18b_0
- packaging=23.0=pyhd8ed1ab_0
- pandas=1.5.3=py311h2872171_0
- pango=1.50.12=hd33c08f_1
- parallel=20230122=ha770c72_0
- patsy=0.5.3=pyhd8ed1ab_0
- pcre2=10.40=hc3806b6_0
- perl=5.34.0=h5eee18b_2
- perl-threaded=5.32.1=hdfd78af_1
- pillow=9.4.0=py311h50def17_1
- pip=23.0=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pooch=1.6.0=pyhd8ed1ab_0
- poppler=22.12.0=h091648b_1
- poppler-data=0.4.12=hd8ed1ab_0
- postgresql=15.2=h3248436_0
- proj=9.1.0=h8ffa02c_1
- pthread-stubs=0.4=h36c2ea0_1001
- pyani=0.2.12=pyhdfd78af_0
- pycparser=2.21=pyhd8ed1ab_0
- pyopenssl=23.0.0=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.11.0=he550d4f_1_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python_abi=3.11=3_cp311
- pytz=2022.7.1=pyhd8ed1ab_0
- r-ade4=1.7_20=r42h5f7b363_0
- r-adegenet=2.1.10=r42h133d619_0
- r-adephylo=1.1_13=r42h06615bd_0
- r-ape=5.6_2=r42h9f5de39_1
- r-askpass=1.1=r42h06615bd_3
- r-assertthat=0.2.1=r42hc72bb7e_3
- r-base=4.2.2=ha7d60f8_3
- r-base64enc=0.1_3=r42h06615bd_1005
- r-boot=1.3_28.1=r42hc72bb7e_0
- r-bslib=0.4.2=r42hc72bb7e_0
- r-cachem=1.0.6=r42h06615bd_1
- r-class=7.3_21=r42h133d619_0
- r-classint=0.4_8=r42h8da6f51_0
- r-cli=3.6.0=r42h38f115c_0
- r-cluster=2.1.4=r42h8da6f51_0
- r-colorspace=2.1_0=r42h133d619_0
- r-commonmark=1.8.1=r42h06615bd_0
- r-cpp11=0.4.3=r42hc72bb7e_0
- r-crayon=1.5.2=r42hc72bb7e_1
- r-curl=4.3.3=r42h06615bd_1
- r-dbi=1.1.3=r42hc72bb7e_1
- r-deldir=1.0_6=r42h8da6f51_1
- r-digest=0.6.31=r42h38f115c_0
- r-dplyr=1.1.0=r42h38f115c_0
- r-e1071=1.7_13=r42h38f115c_0
- r-ellipsis=0.3.2=r42h06615bd_1
- r-fansi=1.0.4=r42h133d619_0
- r-farver=2.1.1=r42h7525677_1
- r-fastmap=1.1.0=r42h7525677_1
- r-fontawesome=0.5.0=r42hc72bb7e_0
- r-fs=1.6.1=r42h38f115c_0
- r-generics=0.1.3=r42hc72bb7e_1
- r-ggplot2=3.4.1=r42hc72bb7e_0
- r-glue=1.6.2=r42h06615bd_1
- r-gtable=0.3.1=r42hc72bb7e_1
- r-hms=1.1.2=r42hc72bb7e_1
- r-htmltools=0.5.4=r42h38f115c_0
- r-httpuv=1.6.9=r42h38f115c_0
- r-httr=1.4.4=r42hc72bb7e_1
- r-igraph=1.3.5=r42hb34fc8a_0
- r-isoband=0.2.7=r42h38f115c_1
- r-jquerylib=0.1.4=r42hc72bb7e_1
- r-jsonlite=1.8.4=r42h133d619_0
- r-kernsmooth=2.23_20=r42hd009a43_1
- r-labeling=0.4.2=r42hc72bb7e_2
- r-later=1.3.0=r42h7525677_1
- r-lattice=0.20_45=r42h06615bd_1
- r-lazyeval=0.2.2=r42h06615bd_3
- r-lifecycle=1.0.3=r42hc72bb7e_1
- r-magrittr=2.0.3=r42h06615bd_1
- r-mass=7.3_58.2=r42h133d619_0
- r-matrix=1.5_3=r42h5f7b363_0
- r-memoise=2.0.1=r42hc72bb7e_1
- r-mgcv=1.8_41=r42h5f7b363_0
- r-mime=0.12=r42h06615bd_1
- r-munsell=0.5.0=r42hc72bb7e_1005
- r-nlme=3.1_162=r42hac0b197_0
- r-openssl=2.0.5=r42habfbb5e_0
- r-permute=0.9_7=r42hc72bb7e_1
- r-pheatmap=1.0.12=r42hc72bb7e_3
- r-phylobase=0.8.10=r42h7525677_3
- r-pillar=1.8.1=r42hc72bb7e_1
- r-pixmap=0.4_12=r42hc72bb7e_1
- r-pkgconfig=2.0.3=r42hc72bb7e_2
- r-plyr=1.8.8=r42h7525677_0
- r-prettyunits=1.1.1=r42hc72bb7e_2
- r-progress=1.2.2=r42hc72bb7e_3
- r-promises=1.2.0.1=r42h7525677_1
- r-proxy=0.4_27=r42h06615bd_1
- r-purrr=1.0.1=r42h133d619_0
- r-r6=2.5.1=r42hc72bb7e_1
- r-rappdirs=0.3.3=r42h06615bd_1
- r-raster=3.5_21=r42h7525677_1
- r-rcolorbrewer=1.1_3=r42h785f33e_1
- r-rcpp=1.0.10=r42h38f115c_0
- r-reshape2=1.4.4=r42h7525677_2
- r-rlang=1.0.6=r42h7525677_1
- r-rncl=0.8.7=r42h38f115c_0
- r-rnexml=2.4.11=r42hc72bb7e_0
- r-s2=1.1.1=r42h5be344c_0
- r-sass=0.4.5=r42h38f115c_0
- r-scales=1.2.1=r42hc72bb7e_1
- r-segmented=1.6_2=r42hc72bb7e_0
- r-seqinr=4.2_23=r42h06615bd_0
- r-sf=1.0_7=r42h282678f_6
- r-shiny=1.7.4=r42h785f33e_0
- r-sourcetools=0.1.7_1=r42h38f115c_0
- r-sp=1.6_0=r42h133d619_0
- r-spdata=2.2.1=r42hc72bb7e_0
- r-spdep=1.2_7=r42h06615bd_1
- r-stringi=1.7.12=r42h1ae9187_0
- r-stringr=1.5.0=r42h785f33e_0
- r-sys=3.4.1=r42h06615bd_0
- r-terra=1.5_21=r42h0f53b7d_8
- r-tibble=3.1.8=r42h06615bd_1
- r-tidyr=1.3.0=r42h38f115c_0
- r-tidyselect=1.2.0=r42hc72bb7e_0
- r-units=0.8_1=r42h38f115c_0
- r-utf8=1.2.3=r42h133d619_0
- r-uuid=1.1_0=r42h06615bd_1
- r-vctrs=0.5.2=r42h38f115c_0
- r-vegan=2.6_4=r42hb20cf53_0
- r-viridislite=0.4.1=r42hc72bb7e_1
- r-withr=2.5.0=r42hc72bb7e_1
- r-wk=0.7.1=r42h38f115c_0
- r-xml=3.99_0.13=r42hed7f998_0
- r-xml2=1.3.3=r42h044e5c7_2
- r-xtable=1.8_4=r42hc72bb7e_4
- r-zoo=1.8_11=r42h06615bd_1
- readline=8.2=h5eee18b_0
- requests=2.28.2=pyhd8ed1ab_0
- scipy=1.10.0=py311h8e6699e_2
- seaborn=0.12.2=hd8ed1ab_0
- seaborn-base=0.12.2=pyhd8ed1ab_0
- sed=4.8=he412f7d_0
- seqkit=2.3.1=h9ee0642_0
- setuptools=67.1.0=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- snappy=1.1.9=hbd366e4_2
- sqlite=3.40.1=h5082296_0
- statsmodels=0.13.5=py311h4c7f6c3_2
- sysroot_linux-64=2.12=he073ed8_15
- tiledb=2.13.2=hd532e3d_0
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- tqdm=4.64.1=pyhd8ed1ab_0
- typing_extensions=4.4.0=pyha770c72_0
- tzcode=2022g=h166bdaf_0
- tzdata=2022g=h191b570_0
- udunits2=2.2.28=hc3e0081_0
- urllib3=1.26.14=pyhd8ed1ab_0
- vsearch=2.22.1=hf1761c0_0
- wheel=0.38.4=pyhd8ed1ab_0
- xerces-c=3.2.4=h55805fa_1
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.10=h5eee18b_1
- zlib=1.2.13=h166bdaf_4
- zstd=1.5.2=h3eb15da_6
prefix: /home/milst/miniconda3/envs/RibDif