validation.yml

name: Validate and Visualize Submission
on:
  pull_request_target:
    branches:
      - main

jobs:
    validates-viz-files:
        runs-on: ubuntu-latest

        steps:
        - name: Checkout repository
          uses: actions/checkout@v3
          with:
            fetch-depth: 1

        - name: Setup R
          uses: r-lib/actions/setup-r@v2

        - name: Install system dependencies
          run: sudo apt-get install libcurl4-openssl-dev libudunits2-dev libgdal-dev


        - name: Cache R packages 
          id: cache
          if: runner.os != 'Windows' 
          uses: actions/cache@v2 
          with: 
            path: ${{ env.R_LIBS_USER }} 
            key: ${{ runner.os }}-${{ hashFiles('.github/requirements.txt') }}-1

        - name: Install dependencies
          if: steps.cache.outputs.cache-hit != 'true'
          run: |
            R -e 'Sys.setenv("NOT_CRAN" = TRUE)
                  install.packages(c("arrow", "gh", "remotes"))
                  Sys.unsetenv("NOT_CRAN")
                  remotes::install_url("https://github.com/midas-network/SMHvalidation/archive/refs/heads/main.zip")
                  remotes::install_url("https://github.com/Infectious-Disease-Modeling-Hubs/hubUtils/archive/refs/heads/main.zip")'
          env: 
            GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

        - name: Run Validation
          run: |
            Rscript code/validation/validation.R
          env:
            GH_PR_NUMBER: ${{ github.event.pull_request.number }}
            GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}


        - name: Upload Projection Plot as Artifact
          uses: actions/upload-artifact@v3
          if: always()
          with:
            name: validation_plot_${{ github.event.pull_request.number }}
            path: ./proj_plot/*
            if-no-files-found: ignore