NAMESPACE

# Generated by roxygen2: do not edit by hand

export(AbsoluteAbundanceData)
export(AbundanceData)
export(Comparator)
export(DifferentialAbundanceResult)
export(alphaDiv)
export(betaDiv)
export(getAbundances)
export(getGroupLabels)
export(internalDiffAbund)
export(rankedAbundance)
export(removeIncompleteSamples)
exportClasses(AbsoluteAbundanceData)
exportClasses(AbundanceData)
exportClasses(Comparator)
exportClasses(DifferentialAbundanceResult)
exportMethods(selfCorrelation)
import(DESeq2)
import(data.table)
import(methods)
import(veupathUtils)
importFrom(Maaslin2,Maaslin2)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,SimpleList)
importFrom(ape,pcoa)
importFrom(methods,new)
importFrom(methods,slot)
importFrom(methods,validObject)
importFrom(purrr,discard)
importFrom(purrr,none)
importFrom(stats,as.dist)
importFrom(stats,as.formula)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,var)
importFrom(stringi,stri_replace_all_fixed)
importFrom(stringi,stri_trans_totitle)
importFrom(vegan,diversity)
importFrom(vegan,vegdist)
importFrom(veupathUtils,CollectionWithMetadata)
importFrom(veupathUtils,SampleMetadata)
useDynLib(microbiomeComputations)