From 2258b7a994724fd855dc5592d54b3195497f09cd Mon Sep 17 00:00:00 2001 From: Amine GHOZLANE Date: Mon, 4 Mar 2024 15:34:56 +0100 Subject: [PATCH] Install bcftools with apt-get --- .github/workflows/main.yml | 8 +------- 1 file changed, 1 insertion(+), 7 deletions(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index df55b46..5285232 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -17,19 +17,13 @@ jobs: - uses: actions/checkout@v4 - name: Install dependencies run: | - pip install numpy scipy cython - sudo apt install bowtie2 + sudo apt-get install -y bowtie2 bcftools - name: Install Python uses: actions/setup-python@v4 # see details (matrix, python-version, python-version-file, etc.) # https://github.com/actions/setup-python - name: Install poetry uses: abatilo/actions-poetry@v2 - - uses: actions/cache@v3 - name: Define a cache for the virtual environment based on the dependencies lock file - with: - path: ./.venv - key: venv-${{ hashFiles('poetry.lock') }} - name: Install the project dependencies run: poetry install --only test -C meteor - name: Run the automated tests (for example)