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org-header.ttl
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@prefix : <http://purl.obolibrary.org/obo/org.owl/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
@prefix ro: <http://purl.obolibrary.org/obo/RO_> .
@prefix bfo: <https://purl.obolibrary.org/obo/BFO_> .
@prefix iao: <http://purl.obolibrary.org/obo/IAO_> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix org: <http://purl.obolibrary.org/obo/ORG_> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix xml: <http://www.w3.org/XML/1998/namespace> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix time: <http://www.w3.org/2006/time#> .
@prefix terms: <http://purl.org/dc/terms/> .
@base <http://purl.obolibrary.org/obo/org.owl> .
<http://purl.obolibrary.org/obo/org.owl> rdf:type owl:Ontology ;
owl:versionIRI <https://purl.obolibrary.org/obo/org/releases/2021-01-30> ;
dc:created "2021-01-30"^^xsd:date ;
dc:creator <http://orcid.org/0000-0002-1304-8447> ;
dc:description "A BFO-based, OBO compliant ontology of organizations."@en ;
dc:title "Organization Ontology"@en ;
terms:license <https://creativecommons.org/share-your-work/public-domain/cc0/> ;
rdfs:comment "This is very early work. The ontology is intended to be sufficient to represent entities and properties in the domain of scholarship, and data for those organizations as collected and managed by GRiD and ROR"@en ;
rdfs:label "Organization Ontology"@en ;
owl:versionInfo "version 0.0.1" .
#################################################################
# Annotation properties
#################################################################
### http://purl.obolibrary.org/obo/IAO_0000111
obo:IAO_0000111 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "editor preferred term"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "The concise, meaningful, and human-friendly name for a class or property preferred by the ontology developers. (US-English)"@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "editor preferred label"@en .
### http://purl.obolibrary.org/obo/IAO_0000112
obo:IAO_0000112 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "example"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "example of usage"@en .
### http://purl.obolibrary.org/obo/IAO_0000114
obo:IAO_0000114 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "has curation status"@en ;
obo:IAO_0000115 "A specification of the state of the metadata for a term"@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ,
"PERSON:Bill Bug"@en ,
"PERSON:Melanie Courtot"@en ;
obo:IAO_0000119 "OBI_0000281"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "has curation status"@en .
### http://purl.obolibrary.org/obo/IAO_0000115
obo:IAO_0000115 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "definition"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."@en ;
obo:IAO_0000116 """2012-04-05:
Barry Smith
The official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.
Can you fix to something like:
A statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.
Alan Ruttenberg
Your proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria.
On the specifics of the proposed definition:
We don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition.
Personally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable.
We also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with."""@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "definition"@en .
### http://purl.obolibrary.org/obo/IAO_0000116
obo:IAO_0000116 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "editor note"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "An administrative note intended for its editor. It may not be included in the publication version of the ontology, so it should contain nothing necessary for end users to understand the ontology."@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obfoundry.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "editor note"@en .
### http://purl.obolibrary.org/obo/IAO_0000117
obo:IAO_0000117 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "term editor"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "Name of editor entering the term in the file. The term editor is a point of contact for information regarding the term. The term editor may be, but is not always, the author of the definition, which may have been worked upon by several people"@en ;
obo:IAO_0000116 "20110707, MC: label update to term editor and definition modified accordingly. See https://github.com/information-artifact-ontology/IAO/issues/115."@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "term editor"@en .
### http://purl.obolibrary.org/obo/IAO_0000118
obo:IAO_0000118 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "alternative term"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)"@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "alternative term"@en .
### http://purl.obolibrary.org/obo/IAO_0000119
obo:IAO_0000119 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "definition source"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"@en ;
obo:IAO_0000117 "PERSON:Daniel Schober"@en ;
obo:IAO_0000119 "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w"^^xsd:string ,
"GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "definition source"@en .
### http://purl.obolibrary.org/obo/IAO_0000232
obo:IAO_0000232 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "curator note"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "An administrative note of use for a curator but of no use for a user"@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "curator note"@en .
### http://purl.obolibrary.org/obo/IAO_0000233
obo:IAO_0000233 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "term tracker item"@en ;
obo:IAO_0000112 "the URI for an OBI Terms ticket at sourceforge, such as https://sourceforge.net/p/obi/obi-terms/772/" ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "An IRI or similar locator for a request or discussion of an ontology term."@en ;
obo:IAO_0000117 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ;
obo:IAO_0000119 "Person: Jie Zheng, Chris Stoeckert, Alan Ruttenberg"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "term tracker item"@en .
### http://purl.obolibrary.org/obo/IAO_0000412
obo:IAO_0000412 rdf:type owl:AnnotationProperty ;
obo:IAO_0000111 "imported from"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "For external terms/classes, the ontology from which the term was imported"@en ;
obo:IAO_0000117 "PERSON:Alan Ruttenberg"@en ,
"PERSON:Melanie Courtot"@en ;
obo:IAO_0000119 "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"@en ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "imported from"@en .
#################################################################
# Object Properties
#################################################################
### http://purl.obolibrary.org/obo/BFO_0000050
obo:BFO_0000050 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002131 ;
obo:IAO_0000111 "is part of"@en ;
obo:IAO_0000112 "my brain is part of my body (continuant parthood, two material entities)"@en ,
"my stomach cavity is part of my stomach (continuant parthood, immaterial entity is part of material entity)"@en ,
"this day is part of this year (occurrent parthood)"@en ;
obo:IAO_0000115 "A core relation that holds between a part and its whole"@en ;
obo:IAO_0000116 "Everything is part of itself. Any part of any part of a thing is itself part of that thing. Two distinct things cannot be part of each other."@en ,
"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en ,
"""Parthood requires the part and the whole to have compatible classes: only an occurrent can be part of an occurrent; only a process can be part of a process; only a continuant can be part of a continuant; only an independent continuant can be part of an independent continuant; only an immaterial entity can be part of an immaterial entity; only a specifically dependent continuant can be part of a specifically dependent continuant; only a generically dependent continuant can be part of a generically dependent continuant. (This list is not exhaustive.)
A continuant cannot be part of an occurrent: use 'participates in'. An occurrent cannot be part of a continuant: use 'has participant'. A material entity cannot be part of an immaterial entity: use 'has location'. A specifically dependent continuant cannot be part of an independent continuant: use 'inheres in'. An independent continuant cannot be part of a specifically dependent continuant: use 'bearer of'."""@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ;
rdfs:label "part of"@en ;
rdfs:seeAlso <http://ontologydesignpatterns.org/wiki/Community:Parts_and_Collections> ,
<http://ontologydesignpatterns.org/wiki/Submissions:PartOf> ,
"http://www.obofoundry.org/ro/#OBO_REL:part_of" .
### http://purl.obolibrary.org/obo/BFO_0000051
obo:BFO_0000051 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002131 ;
obo:IAO_0000111 "has part"@en ;
obo:IAO_0000112 "my body has part my brain (continuant parthood, two material entities)"@en ,
"my stomach has part my stomach cavity (continuant parthood, material entity has part immaterial entity)"@en ,
"this year has part this day (occurrent parthood)"@en ;
obo:IAO_0000115 "A core relation that holds between a whole and its part"@en ;
obo:IAO_0000116 "Everything has itself as a part. Any part of any part of a thing is itself part of that thing. Two distinct things cannot have each other as a part."@en ,
"Occurrents are not subject to change and so parthood between occurrents holds for all the times that the part exists. Many continuants are subject to change, so parthood between continuants will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en ,
"""Parthood requires the part and the whole to have compatible classes: only an occurrent have an occurrent as part; only a process can have a process as part; only a continuant can have a continuant as part; only an independent continuant can have an independent continuant as part; only a specifically dependent continuant can have a specifically dependent continuant as part; only a generically dependent continuant can have a generically dependent continuant as part. (This list is not exhaustive.)
A continuant cannot have an occurrent as part: use 'participates in'. An occurrent cannot have a continuant as part: use 'has participant'. An immaterial entity cannot have a material entity as part: use 'location of'. An independent continuant cannot have a specifically dependent continuant as part: use 'bearer of'. A specifically dependent continuant cannot have an independent continuant as part: use 'inheres in'."""@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ;
rdfs:label "has part"@en .
### http://purl.obolibrary.org/obo/BFO_0000054
obo:BFO_0000054 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000111 "realized in"@en ;
obo:IAO_0000112 "this disease is realized in this disease course"@en ,
"this fragility is realized in this shattering"@en ,
"this investigator role is realized in this investigation"@en ;
obo:IAO_0000115 "A relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process"@en ;
obo:IAO_0000118 "is realized by"@en ,
"realized_in"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:comment "Paraphrase of elucidation: a relation between a realizable entity and a process, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ;
rdfs:isDefinedBy obo:bfo.owl ;
rdfs:label "realized in"@en .
### http://purl.obolibrary.org/obo/BFO_0000055
obo:BFO_0000055 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000111 "realizes"@en ;
obo:IAO_0000112 "this disease course realizes this disease"@en ,
"this investigation realizes this investigator role"@en ,
"this shattering realizes this fragility"@en ;
obo:IAO_0000115 "A relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:comment "Paraphrase of elucidation: a relation between a process and a realizable entity, where there is some material entity that is bearer of the realizable entity and participates in the process, and the realizable entity comes to be realized in the course of the process" ;
rdfs:isDefinedBy obo:iao.owl ;
rdfs:label "realizes"@en .
### http://purl.obolibrary.org/obo/IAO_0000136
obo:IAO_0000136 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000112 "This document is about information artifacts and their representations"@en ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "A (currently) primitive relation that relates an information artifact to an entity."@en ;
obo:IAO_0000116 """7/6/2009 Alan Ruttenberg. Following discussion with Jonathan Rees, and introduction of \"mentions\" relation. Weaken the is_about relationship to be primitive.
We will try to build it back up by elaborating the various subproperties that are more precisely defined.
Some currently missing phenomena that should be considered \"about\" are predications - \"The only person who knows the answer is sitting beside me\" , Allegory, Satire, and other literary forms that can be topical without explicitly mentioning the topic."""@en ;
obo:IAO_0000117 "person:Alan Ruttenberg"@en ;
obo:IAO_0000119 "Smith, Ceusters, Ruttenberg, 2000 years of philosophy"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/2020-12-09/iao.owl"^^xsd:string ;
rdfs:label "is about"@en .
### http://purl.obolibrary.org/obo/IAO_0000219
obo:IAO_0000219 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:IAO_0000136 ;
obo:IAO_0000112 "A person's name denotes the person. A variable name in a computer program denotes some piece of memory. Lexically equivalent strings can denote different things, for instance \"Alan\" can denote different people. In each case of use, there is a case of the denotation relation obtaining, between \"Alan\" and the person that is being named."@en ;
obo:IAO_0000115 "A primitive, instance-level, relation obtaining between an information content entity and some portion of reality. Denotation is what happens when someone creates an information content entity E in order to specifically refer to something. The only relation between E and the thing is that E can be used to 'pick out' the thing. This relation connects those two together. Freedictionary.com sense 3: To signify directly; refer to specifically"@en ;
obo:IAO_0000116 """2009-11-10 Alan Ruttenberg. Old definition said the following to emphasize the generic nature of this relation. We no longer have 'specifically denotes', which would have been primitive, so make this relation primitive.
g denotes r =def
r is a portion of reality
there is some c that is a concretization of g
every c that is a concretization of g specifically denotes r"""@en ;
obo:IAO_0000117 "person:Alan Ruttenberg"@en ;
obo:IAO_0000119 "Conversations with Barry Smith, Werner Ceusters, Bjoern Peters, Michel Dumontier, Melanie Courtot, James Malone, Bill Hogan"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/2020-12-09/iao.owl"^^xsd:string ;
rdfs:label "denotes"@en .
### http://purl.obolibrary.org/obo/IAO_0000235
obo:IAO_0000235 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:IAO_0000136 ;
obo:IAO_0000115 "Inverse of the relation 'denotes'"@en ;
obo:IAO_0000117 "Person: Jie Zheng, Chris Stoeckert, Mike Conlon"@en ;
obo:IAO_0000233 <https://github.com/information-artifact-ontology/IAO/issues/206> ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/2020-12-09/iao.owl"^^xsd:string ;
rdfs:label "denoted by"@en .
### http://purl.obolibrary.org/obo/RO_0000052
obo:RO_0000052 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000111 "inheres in"@en ;
obo:IAO_0000112 "this fragility inheres in this vase"@en ,
"this red color inheres in this apple"@en ;
obo:IAO_0000115 "A relation between a specifically dependent continuant (the dependent) and an independent continuant (the bearer), in which the dependent specifically depends on the bearer for its existence"@en ;
obo:IAO_0000116 "A dependent inheres in its bearer at all times for which the dependent exists."@en ;
obo:IAO_0000118 "inheres_in"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "inheres in"@en .
### http://purl.obolibrary.org/obo/RO_0000053
obo:RO_0000053 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000111 "bearer of"@en ;
obo:IAO_0000112 "this apple is bearer of this red color"@en ,
"this vase is bearer of this fragility"@en ;
obo:IAO_0000115 "A relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en ;
obo:IAO_0000116 "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ;
rdfs:label "bearer of"@en .
### http://purl.obolibrary.org/obo/RO_0000056
obo:RO_0000056 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000111 "participates in"@en ;
obo:IAO_0000112 "this blood clot participates in this blood coagulation"@en ,
"this input material (or this output material) participates in this process"@en ,
"this investigator participates in this investigation"@en ;
obo:IAO_0000115 "A relation between a continuant and a process, in which the continuant is somehow involved in the process"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ;
rdfs:label "participates in"@en .
### http://purl.obolibrary.org/obo/RO_0000057
obo:RO_0000057 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000111 "has participant"@en ;
obo:IAO_0000112 "this blood coagulation has participant this blood clot"@en ,
"this investigation has participant this investigator"@en ,
"this process has participant this input material (or this output material)"@en ;
obo:IAO_0000115 "A relation between a process and a continuant, in which the continuant is somehow involved in the process"@en ;
obo:IAO_0000116 "Has_participant is a primitive instance-level relation between a process, a continuant, and a time at which the continuant participates in some way in the process. The relation obtains, for example, when this particular process of oxygen exchange across this particular alveolar membrane has_participant this particular sample of hemoglobin at this particular time."@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ;
rdfs:label "has participant"@en .
### http://purl.obolibrary.org/obo/RO_0000080
obo:RO_0000080 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000052 ;
obo:IAO_0000112 "this red color is a quality of this apple"@en ;
obo:IAO_0000115 "A relation between a quality and an independent continuant (the bearer), in which the quality specifically depends on the bearer for its existence"@en ;
obo:IAO_0000116 "A quality inheres in its bearer at all times for which the quality exists."@en ;
obo:IAO_0000118 "is quality of"@en ,
"quality_of"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "quality of"@en .
### http://purl.obolibrary.org/obo/RO_0000081
obo:RO_0000081 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000052 ;
obo:IAO_0000112 "This investigator role is a role of this person"@en ;
obo:IAO_0000115 "A relation between a role and an independent continuant (the bearer), in which the role specifically depends on the bearer for its existence"@en ;
obo:IAO_0000116 "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."@en ;
obo:IAO_0000118 "is role of"@en ,
"role_of"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "role of"@en .
### http://purl.obolibrary.org/obo/RO_0000086
obo:RO_0000086 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000053 ;
obo:IAO_0000112 "this apple has quality this red color"@en ;
obo:IAO_0000115 "A relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en ;
obo:IAO_0000116 "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist."@en ;
obo:IAO_0000118 "has_quality"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "has quality"@en .
### http://purl.obolibrary.org/obo/RO_0000087
obo:RO_0000087 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000053 ;
obo:IAO_0000112 "This person has role this investigator role (more colloquially: this person has this role of investigator)"@en ;
obo:IAO_0000115 "A relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en ;
obo:IAO_0000116 "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."@en ;
obo:IAO_0000118 "has_role"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "has role"@en .
### http://purl.obolibrary.org/obo/RO_0000091
obo:RO_0000091 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000053 ;
obo:IAO_0000115 "A relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ;
rdfs:label "has disposition"@en .
### http://purl.obolibrary.org/obo/RO_0000092
obo:RO_0000092 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0000052 ;
obo:IAO_0000115 "Inverse of has disposition" ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "disposition of"@en .
### http://purl.obolibrary.org/obo/RO_0001015
obo:RO_0001015 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000111 "is location of"@en ;
obo:IAO_0000112 "my head is the location of my brain"@en ,
"this cage is the location of this rat"@en ;
obo:IAO_0000115 "A relation between two independent continuants, the location and the target, in which the target is entirely within the location"@en ;
obo:IAO_0000116 "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "location of"@en .
### http://purl.obolibrary.org/obo/RO_0001025
obo:RO_0001025 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000111 "located in"@en ;
obo:IAO_0000112 "my brain is located in my head"@en ,
"this rat is located in this cage"@en ;
obo:IAO_0000115 "A relation between two independent continuants, the target and the location, in which the target is entirely within the location"@en ;
obo:IAO_0000116 "Location as a relation between instances: The primitive instance-level relation c located_in r at t reflects the fact that each continuant is at any given time associated with exactly one spatial region, namely its exact location. Following we can use this relation to define a further instance-level location relation - not between a continuant and the region which it exactly occupies, but rather between one continuant and another. c is located in c1, in this sense, whenever the spatial region occupied by c is part_of the spatial region occupied by c1. Note that this relation comprehends both the relation of exact location between one continuant and another which obtains when r and r1 are identical (for example, when a portion of fluid exactly fills a cavity), as well as those sorts of inexact location relations which obtain, for example, between brain and head or between ovum and uterus"@en ,
"Most location relations will only hold at certain times, but this is difficult to specify in OWL. See https://code.google.com/p/obo-relations/wiki/ROAndTime"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "located in"@en .
### http://purl.obolibrary.org/obo/RO_0002012
obo:RO_0002012 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:BFO_0000050 ,
owl:topObjectProperty ;
obo:IAO_0000115 "A part of relation that applies only between occurents." ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ,
"http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "occurent part of" .
### http://purl.obolibrary.org/obo/RO_0002131
obo:RO_0002131 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf obo:RO_0002323 ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "X overlaps y if and only if there exists some z such that x has part z and z part of y" ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ;
rdfs:label "overlaps"@en .
### http://purl.obolibrary.org/obo/RO_0002234
obo:RO_0002234 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000114 obo:IAO_0000125 ;
obo:IAO_0000115 "P has output c iff c is a participant in p, c is present at the end of p, and c is not present at the beginning of p." ;
obo:IAO_0000117 "Chris Mungall" ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "has output"@en .
### http://purl.obolibrary.org/obo/RO_0002323
obo:RO_0002323 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000115 "A mereological relationship or a topological relationship" ;
obo:IAO_0000117 "Chris Mungall" ;
obo:IAO_0000232 "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships" ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2020-12-18/ro.owl"^^xsd:string ;
rdfs:label "mereotopologically related to"@en .
### http://purl.obolibrary.org/obo/RO_0002353
obo:RO_0002353 rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000115 "Inverse of has output" ;
obo:IAO_0000117 "Chris Mungall" ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/ro/releases/2021-03-08/ro.owl"^^xsd:string ;
rdfs:label "output of"@en .
### http://www.w3.org/2006/time#unitType
time:unitType rdf:type owl:ObjectProperty ;
rdfs:subPropertyOf owl:topObjectProperty ;
obo:IAO_0000115 "An indicator of the temporal precision of a time instant"@en ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "temporal unit type"@en .
#################################################################
# Data properties
#################################################################
### http://purl.obolibrary.org/obo/OBI_0002815
obo:OBI_0002815 rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
obo:IAO_0000111 "has representation"@en ;
obo:IAO_0000112 "12th arrondissement of Paris"@en ,
"20g"^^xsd:string ,
"I feel sick to my stomach every Tuesday"@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "Define 'has representation' is a data property that attaches between an information content entity and a value that contains linguistically or computationally coded text."@en ;
obo:IAO_0000116 "Further processing may enable the value to be represented in a component data structure such as an OBI value specification."@en ;
obo:IAO_0000117 "Damion Dooley"^^xsd:string ,
"Mark Miller"^^xsd:string ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/obi/2020-08-24/obi.owl"^^xsd:string ;
rdfs:label "has representation"@en .
### http://www.w3.org/2006/time#inXSDDateTimeStamp
time:inXSDDateTimeStamp rdf:type owl:DatatypeProperty ;
rdfs:subPropertyOf owl:topDataProperty ;
obo:IAO_0000115 "A datatype property to contain the representation of a time instant as an xsd datetimestamp" ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:domain time:Instant;
rdfs:range xsd:dateTimeStamp ;
rdfs:label "in XSD Date-Time-Stamp"@en .
#################################################################
# Classes
#################################################################
### http://purl.obolibrary.org/obo/BFO_0000001
obo:BFO_0000001 rdf:type owl:Class ;
rdfs:subClassOf owl:Thing ;
obo:IAO_0000115 "The fundamental thing that has existence. All things that exist are entities."@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "entity"@en .
### http://purl.obolibrary.org/obo/BFO_0000002
obo:BFO_0000002 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000001 ;
obo:IAO_0000115 "An entity which has existence in time"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "continuant"@en .
### http://purl.obolibrary.org/obo/BFO_0000003
obo:BFO_0000003 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000001 ;
obo:IAO_0000115 "An entity which occurs in time"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "occurrent"@en .
### http://purl.obolibrary.org/obo/BFO_0000004
obo:BFO_0000004 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000002 ;
obo:IAO_0000112 "a chair"@en ,
"a heart"@en ,
"a leg"@en ,
"a molecule"@en ,
"a spatial region"@en ,
"an atom"@en ,
"an orchestra."@en ,
"an organism"@en ,
"the bottom right portion of a human torso"@en ,
"the interior of your mouth"@en ;
obo:IAO_0000115 "B is an independent continuant = Def. b is a continuant which is such that there is no c and no t such that b s-depends_on c at t. (axiom label in BFO2 Reference: [017-002])"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"^^xsd:string ;
rdfs:isDefinedBy obo:bfo.owl ;
rdfs:label "independent continuant"@en .
### http://purl.obolibrary.org/obo/BFO_0000008
obo:BFO_0000008 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000003 ;
obo:IAO_0000115 "An occurent which is some part of time"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "temporal region"@en .
### http://purl.obolibrary.org/obo/BFO_0000015
obo:BFO_0000015 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000003 ;
obo:IAO_0000115 "P is a process = Def. p is an occurrent that has temporal proper parts and for some time t, p s-depends_on some material entity at t. (axiom label in BFO2 Reference: [083-003]) [has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/083-003]"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "process"@en .
### http://purl.obolibrary.org/obo/BFO_0000016
obo:BFO_0000016 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000017 ;
obo:IAO_0000115 "A realizable entity that presents in a continuant"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "disposition"@en .
### http://purl.obolibrary.org/obo/BFO_0000017
obo:BFO_0000017 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000020 ;
obo:IAO_0000115 "To say that b is a realizable entity is to say that b is a specifically dependent continuant that inheres in some independent continuant which is not a spatial region and is of a type instances of which are realized in processes of a correlated type. (axiom label in BFO2 Reference: [058-002])"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "realizable entity"@en .
### http://purl.obolibrary.org/obo/BFO_0000019
obo:BFO_0000019 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000017 ;
obo:IAO_0000112 "the ambient temperature of this portion of air"@en ,
"the color of a tomato"@en ,
"the length of the circumference of your waist"@en ,
"the mass of this piece of gold."@en ,
"the shape of your nose"@en ,
"the shape of your nostril"@en ;
obo:IAO_0000115 "A quality is a specifically dependent continuant that, in contrast to roles and dispositions, does not require any further process in order to be realized."@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"^^xsd:string ;
rdfs:label "quality"@en .
### http://purl.obolibrary.org/obo/BFO_0000020
obo:BFO_0000020 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000002 ;
obo:IAO_0000115 "B is a specifically dependent continuant = Def. b is a continuant & there is some independent continuant c which is not a spatial region and which is such that b s-depends_on c at every time t during the course of b’s existence. (axiom label in BFO2 Reference: [050-003]) [has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/050-003]"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "specifically dependent continuant"@en .
### http://purl.obolibrary.org/obo/BFO_0000023
obo:BFO_0000023 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000017 ;
obo:IAO_0000112 "John’s role of husband to Mary is dependent on Mary’s role of wife to John, and both are dependent on the object aggregate comprising John and Mary as member parts joined together through the relational quality of being married."@en ,
"the priest role"@en ,
"the role of a boundary to demarcate two neighboring administrative territories"@en ,
"the role of a building in serving as a military target"@en ,
"the role of a stone in marking a property boundary"@en ,
"the role of subject in a clinical trial"@en ,
"the student role"@en ;
obo:IAO_0000115 "B is a role means: b is a realizable entity & b exists because there is some single bearer that is in some special physical, social, or institutional set of circumstances in which this bearer does not have to be& b is not such that, if it ceases to exist, then the physical make-up of the bearer is thereby changed."@en ;
obo:IAO_0000116 "BFO 2 Reference: One major family of examples of non-rigid universals involves roles, and ontologies developed for corresponding administrative purposes may consist entirely of representatives of entities of this sort. Thus ‘professor’, defined as follows,b instance_of professor at t =Def. there is some c, c instance_of professor role & c inheres_in b at t.denotes a non-rigid universal and so also do ‘nurse’, ‘student’, ‘colonel’, ‘taxpayer’, and so forth. (These terms are all, in the jargon of philosophy, phase sortals.) By using role terms in definitions, we can create a BFO conformant treatment of such entities drawing on the fact that, while an instance of professor may be simultaneously an instance of trade union member, no instance of the type professor role is also (at any time) an instance of the type trade union member role (any more than any instance of the type color is at any time an instance of the type length).If an ontology of employment positions should be defined in terms of roles following the above pattern, this enables the ontology to do justice to the fact that individuals instantiate the corresponding universals – professor, sergeant, nurse – only during certain phases in their lives."@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"^^xsd:string ;
rdfs:isDefinedBy obo:bfo.owl ;
rdfs:label "role"@en .
### http://purl.obolibrary.org/obo/BFO_0000029
obo:BFO_0000029 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000141 ;
obo:IAO_0000112 "Manhattan Canyon)"@en ,
"a hole in the interior of a portion of cheese"@en ,
"a rabbit hole"@en ,
"an air traffic control region defined in the airspace above an airport"@en ,
"the Grand Canyon"@en ,
"the Piazza San Marco"@en ,
"the cockpit of an aircraft"@en ,
"the hold of a ship"@en ,
"the interior of a kangaroo pouch"@en ,
"the interior of the trunk of your car"@en ,
"the interior of your bedroom"@en ,
"the interior of your office"@en ,
"the interior of your refrigerator"@en ,
"the lumen of your gut"@en ,
"your left nostril (a fiat part – the opening – of your left nasal cavity)"@en ;
obo:IAO_0000115 "B is a site means: b is a three-dimensional immaterial entity that is (partially or wholly) bounded by a material entity or it is a three-dimensional immaterial part thereof. (axiom label in BFO2 Reference: [034-002])"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"^^xsd:string ;
rdfs:isDefinedBy obo:bfo.owl ;
rdfs:label "site"@en .
### http://purl.obolibrary.org/obo/BFO_0000031
obo:BFO_0000031 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000002 ;
obo:IAO_0000115 "B is a generically dependent continuant = Def. b is a continuant that g-depends_on one or more other entities. (axiom label in BFO2 Reference: [074-001]) [has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/074-001]"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "generically dependent continuant"@en .
### http://purl.obolibrary.org/obo/BFO_0000035
obo:BFO_0000035 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000003 ;
obo:IAO_0000115 "P is a process boundary =Def. p is a temporal part of a process & p has no proper temporal parts. (axiom label in BFO2 Reference: [084-001]) [has axiom label: http://purl.obolibrary.org/obo/bfo/axiom/084-001]"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "process boundary"@en .
### http://purl.obolibrary.org/obo/BFO_0000038
obo:BFO_0000038 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000008 ;
obo:IAO_0000115 "A one-dimensional temporal region is a temporal region that is extended. (axiom label in BFO2 Reference: [103-001])"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "one-dimensional temporal region"@en .
### http://purl.obolibrary.org/obo/BFO_0000040
obo:BFO_0000040 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000004 ;
obo:IAO_0000112 "a flame"@en ,
"a forest fire"@en ,
"a human being"@en ,
"a hurricane"@en ,
"a photon"@en ,
"a puff of smoke"@en ,
"a sea wave"@en ,
"a tornado"@en ,
"an aggregate of human beings."@en ,
"an energy wave"@en ,
"an epidemic"@en ,
"the undetached arm of a human being"@en ;
obo:IAO_0000115 "A material entity is an independent continuant that has some portion of matter as proper or improper continuant part. (axiom label in BFO2 Reference: [019-002])"@en ;
obo:IAO_0000116 "BFO 2 Reference: Material entities (continuants) can preserve their identity even while gaining and losing material parts. Continuants are contrasted with occurrents, which unfold themselves in successive temporal parts or phases [60"@en ,
"BFO 2 Reference: Object, Fiat Object Part and Object Aggregate are not intended to be exhaustive of Material Entity. Users are invited to propose new subcategories of Material Entity."@en ,
"BFO 2 Reference: ‘Matter’ is intended to encompass both mass and energy (we will address the ontological treatment of portions of energy in a later version of BFO). A portion of matter is anything that includes elementary particles among its proper or improper parts: quarks and leptons, including electrons, as the smallest particles thus far discovered; baryons (including protons and neutrons) at a higher level of granularity; atoms and molecules at still higher levels, forming the cells, organs, organisms and other material entities studied by biologists, the portions of rock studied by geologists, the fossils studied by paleontologists, and so on.Material entities are three-dimensional entities (entities extended in three spatial dimensions), as contrasted with the processes in which they participate, which are four-dimensional entities (entities extended also along the dimension of time).According to the FMA, material entities may have immaterial entities as parts – including the entities identified below as sites; for example the interior (or ‘lumen’) of your small intestine is a part of your body. BFO 2.0 embodies a decision to follow the FMA here."@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"^^xsd:string ;
rdfs:isDefinedBy obo:bfo.owl ;
rdfs:label "material entity"@en .
### http://purl.obolibrary.org/obo/BFO_0000141
obo:BFO_0000141 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000004 ;
obo:IAO_0000115 "An immaterial entity is the boundary or interior of a material entity"@en ;
obo:IAO_0000116 "BFO 2 Reference: Immaterial entities are divided into two subgroups:boundaries and sites, which bound, or are demarcated in relation, to material entities, and which can thus change location, shape and size and as their material hosts move or change shape or size (for example: your nasal passage; the hold of a ship; the boundary of Wales (which moves with the rotation of the Earth) [38, 7, 10"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2019-08-26/bfo.owl"^^xsd:string ;
rdfs:isDefinedBy obo:bfo.owl ;
rdfs:label "immaterial entity"@en .
### http://purl.obolibrary.org/obo/BFO_0000148
obo:BFO_0000148 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000008 ;
obo:IAO_0000115 "A temporal region of no duration."@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/bfo/2020/bfo.owl"^^xsd:string ;
rdfs:label "zero-dimensional temporal region"@en .
### http://purl.obolibrary.org/obo/IAO_0000030
obo:IAO_0000030 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000031 ;
obo:IAO_0000111 "information content entity"@en ;
obo:IAO_0000112 "Examples of information content entites include journal articles, data, graphical layouts, and graphs."@en ;
obo:IAO_0000114 obo:IAO_0000122 ;
obo:IAO_0000115 "A generically dependent continuant that is about some thing."@en ;
obo:IAO_0000116 "2014-03-10: The use of \"thing\" is intended to be general enough to include universals and configurations (see https://groups.google.com/d/msg/information-ontology/GBxvYZCk1oc/-L6B5fSBBTQJ)."@en ,
"""information_content_entity 'is_encoded_in' some digital_entity in obi before split (040907). information_content_entity 'is_encoded_in' some physical_document in obi before split (040907).
Previous. An information content entity is a non-realizable information entity that 'is encoded in' some digital or physical entity."""@en ;
obo:IAO_0000117 "PERSON: Chris Stoeckert"@en ;
obo:IAO_0000119 "OBI_0000142"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/2020-12-09/iao.owl"^^xsd:string ;
rdfs:label "information content entity"@en .
### http://purl.obolibrary.org/obo/IAO_0000422
obo:IAO_0000422 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000030 ;
obo:IAO_0000114 obo:IAO_0000123 ;
obo:IAO_0000115 "A textual entity that is used as directive to deliver something to a person, or organization" ;
obo:IAO_0000116 "2010-05-24 Alan Ruttenberg. Use label for the string representation. See issue https://github.com/information-artifact-ontology/IAO/issues/59" ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/2017-03-24/iao.owl"^^xsd:string ;
rdfs:label "postal address"@en .
### http://purl.obolibrary.org/obo/IAO_0000429
obo:IAO_0000429 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000030 ;
obo:IAO_0000111 "email address"@en ;
obo:IAO_0000114 obo:IAO_0000123 ;
obo:IAO_0000115 "A designation used to deliver email to a recipient. Typically has an associated email representation"@en ;
obo:IAO_0000116 "Alan Ruttenberg 1/3/2012 - Provisional id, see issue at https://github.com/information-artifact-ontology/IAO/issues/130&thanks=130&ts=1325636583"@en ;
obo:IAO_0000117 "Person:Alan Ruttenberg"@en ,
"Person:Chris Stoeckart"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/2017-03-24/iao.owl"^^xsd:string ;
rdfs:label "email address"@en .
### http://purl.obolibrary.org/obo/IAO_0000578
obo:IAO_0000578 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0020000 ;
obo:IAO_0000112 "The sentence \"The article has Pubmed ID 12345.\" contains a CRID that has two parts: one part is the CRID symbol, which is '12345'; the other part denotes the CRID registry, which is Pubmed."@en ;
obo:IAO_0000114 obo:IAO_0000120 ;
obo:IAO_0000115 "An information content entity that consists of a CRID symbol and additional information about the CRID registry to which it belongs."@en ;
obo:IAO_0000116 "2014-05-05: In defining this term we take no position on what the CRID denotes. In particular do not assume it denotes a *record* in the CRID registry (since the registry might not have 'records')."@en ,
"Alan, IAO call 20101124: potentially the CRID denotes the instance it was associated with during creation."@en ,
"Note, IAO call 20101124: URIs are not always CRID, as not centrally registered. We acknowledge that CRID is a subset of a larger identifier class, but this subset fulfills our current needs. OBI PURLs are CRID as they are registered with OCLC. UPCs (Universal Product Codes from AC Nielsen)are not CRID as they are not centrally registered."@en ;
obo:IAO_0000117 "PERSON: Alan Ruttenberg"@en ,
"PERSON: Bill Hogan"@en ,
"PERSON: Bjoern Peters"@en ,
"PERSON: Melanie Courtot"@en ;
obo:IAO_0000118 "CRID" ;
obo:IAO_0000119 "Original proposal from Bjoern, discussions at IAO calls"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "centrally registered identifier"@en .
### http://purl.obolibrary.org/obo/IAO_0020000
obo:IAO_0020000 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000030 ;
obo:IAO_0000111 "identifier"@en ;
obo:IAO_0000115 "An identifier is an information content entity that is the outcome of a dubbing process and is used to refer to one instance of entity shared by a group of people to refer to that individual entity."@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "identifier"@en .
### http://purl.obolibrary.org/obo/IAO_0022003
obo:IAO_0022003 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000578 ;
obo:IAO_0000111 "http://purl.obolibrary.org/obo/IAO_0000123"@en ;
obo:IAO_0000112 "The CrossRef ID for the University of Florida is 100007698. When authors cite the university as a funder of their work, CrossRef uses this number to identify the university"@en ;
obo:IAO_0000115 "An identifier assigned by CrossRef to an organization which has funded a project resulting in a published work"@en ;
obo:IAO_0000117 "PERSON: Michael Conlon"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "crossref funder identifier"@en .
### http://purl.obolibrary.org/obo/IAO_0022006
obo:IAO_0022006 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000578 ;
obo:IAO_0000111 "DBpedia URL"@en ,
"http://purl.obolibrary.org/obo/IAO_0000123"@en ;
obo:IAO_0000112 "The DBpedia URL for the football player Cristiano Ronaldo is http://dbpedia.org/resource/Cristiano_Ronaldo"@en ;
obo:IAO_0000115 "A URL used by DBpedia to identify an entity"@en ;
obo:IAO_0000116 "clarify"@en ;
obo:IAO_0000117 "PERSON: Michael Conlon"@en ;
obo:IAO_0000119 "https://dbpedia.org"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "dbpedia identifier"@en .
### http://purl.obolibrary.org/obo/IAO_0022010
obo:IAO_0022010 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000578 ;
obo:IAO_0000111 "GRiD"@en ,
"http://purl.obolibrary.org/obo/IAO_0000123"@en ;
obo:IAO_0000112 "The ISBN-13 for Native Son, by Richard Wright, Harper Perennial, Reissued 2005 is 978-0-06-083756-3"@en ;
obo:IAO_0000115 "An identifier assigned and managed by Digital Science for the purpose of denoting research organizations"@en ;
obo:IAO_0000117 "PERSON: Michael Conlon"@en ;
obo:IAO_0000119 "https://grid.ac"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "global research organization identifier"@en .
### http://purl.obolibrary.org/obo/IAO_0022014
obo:IAO_0022014 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000578 ;
obo:IAO_0000111 "ISNI"@en ,
"http://purl.obolibrary.org/obo/IAO_0000123"@en ;
obo:IAO_0000115 "An identifier for persons and organizations which may be assigned by matching algorithms based on records provided by publishers"@en ;
obo:IAO_0000116 "spell out"@en ;
obo:IAO_0000117 "PERSON: Michael Conlon"@en ;
obo:IAO_0000119 "https://isni.org/page/what-is-isni/"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "international standard name identifier"@en .
### http://purl.obolibrary.org/obo/IAO_0022022
obo:IAO_0022022 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000578 ;
obo:IAO_0000111 "ROR ID"@en ,
"http://purl.obolibrary.org/obo/IAO_0000123"@en ;
obo:IAO_0000115 "An identifier assigned by ROR to research organizations in the world"@en ;
obo:IAO_0000117 "PERSON: Michael Conlon"@en ;
obo:IAO_0000119 "http://ror.org"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "research organization registry identifier"@en .
### http://purl.obolibrary.org/obo/IAO_0022027
obo:IAO_0022027 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000578 ;
obo:IAO_0000111 "QID"@en ,
"http://purl.obolibrary.org/obo/IAO_0000123"@en ;
obo:IAO_0000115 "QID (or Q number) is the unique identifier of a data item on Wikidata, comprising the letter \"Q\" followed by one or more digits."@en ;
obo:IAO_0000117 "PERSON: Michael Conlon"@en ;
obo:IAO_0000119 "https://www.wikidata.org/wiki/Q43649390"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "wikidata q number"@en .
### http://purl.obolibrary.org/obo/IAO_0022057
obo:IAO_0022057 rdf:type owl:Class ;
rdfs:subClassOf obo:IAO_0000578 ;
obo:IAO_0000111 "Ringgold ID"@en ,
"http://purl.obolibrary.org/obo/IAO_0000123"@en ;
obo:IAO_0000115 "The Ringgold Identifier is a unique numerical identifier applied to organizations in the scholarly supply chain"@en ;
obo:IAO_0000117 "PERSON: Michael Conlon"@en ;
obo:IAO_0000119 "https://www.ringgold.com/ringgold-identifier/"@en ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/iao/ido/release/2021-02-19/ido.owl"^^xsd:string ;
rdfs:label "ringgold identifier"@en .
### http://purl.obolibrary.org/obo/NCBITaxon_9606
obo:NCBITaxon_9606 rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000040 ;
obo:IAO_0000111 "Homo sapiens"^^xsd:string ;
obo:IAO_0000115 "The species of bipedal primates to which moden humans belong"@en ;
obo:IAO_0000118 "human"^^xsd:string ,
"human being"^^xsd:string ;
obo:IAO_0000412 "http://purl.obolibrary.org/obo/obi/2021-04-06/obi.owl"^^xsd:string ;
rdfs:label "Homo sapiens"^^xsd:string .
### http://www.w3.org/2004/02/skos/core#Concept
skos:Concept rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000031 ;
obo:IAO_0000115 "An idea or notion, a unit of thought"@en ;
obo:IAO_0000116 """Minor hijack here. We added the subClassOf assertion to tie in to the BFO subsumption hierarchy rather than adding a new term for 'concept'
Concept as a generic dependent continuant seems right -- the concept is dependent on the collective of humans. Thought is in human brains.
We also edited the label addding (skos) to insure unique labels as required by the OBO Principles. MC."""@en ;
rdfs:isDefinedBy "http://www.w3.org/2004/02/skos/core"^^xsd:anyURI ;
rdfs:label "concept (skos)"@en .
### http://www.w3.org/2006/time#Instant
time:Instant rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000148 ;
obo:IAO_0000115 "A zero-dimensional part of time. Precision may specify a range. Represented by xsd datetime string"@en ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "time instant"@en .
### http://www.w3.org/2006/time#TemporalUnit
time:TemporalUnit rdf:type owl:Class ;
rdfs:subClassOf obo:BFO_0000038 ;
obo:IAO_0000115 "A specification of a time duration. Used to specify precision of time instants"@en ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "temporal unit"@en .
#################################################################
# Individuals
#################################################################
### http://www.w3.org/2006/time#unitDay
time:unitDay rdf:type owl:NamedIndividual ,
time:TemporalUnit ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "day (unit of temporal duration)"@en .
### http://www.w3.org/2006/time#unitHour
time:unitHour rdf:type owl:NamedIndividual ,
time:TemporalUnit ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "hour (unit of temporal duration)"@en .
### http://www.w3.org/2006/time#unitMinute
time:unitMinute rdf:type owl:NamedIndividual ,
time:TemporalUnit ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "minute (unit of temporal duration)"@en .
### http://www.w3.org/2006/time#unitMonth
time:unitMonth rdf:type owl:NamedIndividual ,
time:TemporalUnit ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "month (unit of temporal duration)"@en .
### http://www.w3.org/2006/time#unitSecond
time:unitSecond rdf:type owl:NamedIndividual ,
time:TemporalUnit ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "second (unit of temporal duration)"@en .
### http://www.w3.org/2006/time#unitWeek
time:unitWeek rdf:type owl:NamedIndividual ,
time:TemporalUnit;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "week (unit of temporal duration)"@en .
### http://www.w3.org/2006/time#unitYear
time:unitYear rdf:type owl:NamedIndividual ,
time:TemporalUnit ;
obo:IAO_0000412 "http://www.w3.org/2006/time#2016"^^xsd:string ;
rdfs:label "year (unit of temporal duration)"@en .
### Generated by the OWL API (version 4.5.9.2019-02-01T07:24:44Z) https://github.com/owlcs/owlapi