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"Download Fasta: Unique Sequences In This Tree" which is named like <clonal_family.id>.fasta
" Download Fasta: Lineage Sequences" which is named like <lineage_sequence.id>-lineage.fasta
In a recent meeting with @lauradoepker, we settled on the following options instead (names of buttons tbd but behavior and file names are what's important):
Download tree sequences: Should include ASR + leaves and file should be labeled with -indels-reversed if the sequences from partis used came from the inde_reversed_seqs key
Download original leaves: Should include only non-indel-reversed original sampled sequences from the cluster from the partis input_seqs key. (Should we label to emphasize non-indel-reversed status?)
Download lineage: Should include lineage sequences from selected sequence to naive, and file name should reflect indel status in the same way as the tree sequences by adding -indels-reversed if the indel_reversed_seqs key was used from the partis output for any of the cluster sequences
The text was updated successfully, but these errors were encountered:
As it is now we have:
<clonal_family.id>.fasta
<lineage_sequence.id>-lineage.fasta
In a recent meeting with @lauradoepker, we settled on the following options instead (names of buttons tbd but behavior and file names are what's important):
-indels-reversed
if the sequences from partis used came from theinde_reversed_seqs
keyinput_seqs
key. (Should we label to emphasize non-indel-reversed status?)-indels-reversed
if theindel_reversed_seqs
key was used from the partis output for any of the cluster sequencesThe text was updated successfully, but these errors were encountered: