From 68917a0009ab9445202122381b2f190924efe3d5 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Fri, 8 Nov 2024 23:38:48 +0200 Subject: [PATCH 1/9] Fix ChainedAssignmentError in from_sssom_dataframe Warning: ChainedAssignmentError: A value is trying to be set on a copy of a DataFrame or Series through chained assignment using an inplace method. When using the Copy-on-Write mode, such inplace method never works to update the original DataFrame or Series, because the intermediate object on which we are setting values always behaves as a copy. I just to just not use "inplace" here and the warning does not happen. --- src/sssom/parsers.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sssom/parsers.py b/src/sssom/parsers.py index c2348fe3..98292943 100644 --- a/src/sssom/parsers.py +++ b/src/sssom/parsers.py @@ -425,7 +425,7 @@ def from_sssom_dataframe( # This is to address: A value is trying to be set on a copy of a slice from a DataFrame if CONFIDENCE in df.columns: df2 = df.copy() - df2[CONFIDENCE].replace(r"^\s*$", np.nan, regex=True, inplace=True) + df2[CONFIDENCE] = df2[CONFIDENCE].replace(r"^\s*$", np.nan, regex=True) df = df2 mapping_set = _get_mapping_set_from_df(df=df, meta=meta) From 21019c7464323f9305e9913eea2a194f18f61360 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Fri, 8 Nov 2024 23:43:39 +0200 Subject: [PATCH 2/9] Handle `FutureWarning: Downcasting behavior in `replace` is deprecated` Previously this warning happened: FutureWarning: Downcasting behavior in `replace` is deprecated and will be removed in a future version. To retain the old behavior, explicitly call `result.infer_objects(copy=False)`. To opt-in to the future behavior, set `pd.set_option('future.no_silent_downcasting', True)` df.replace("", np.nan, inplace=True) setting the option stops Pandas from even trying to downcast (so it no longer has anything to warn about). I then force the downcast explicitly with infer_objects to ensure that the behaviour remains what it was, but not sure this is what I want here. --- src/sssom/util.py | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/src/sssom/util.py b/src/sssom/util.py index f506c44a..9874bee1 100644 --- a/src/sssom/util.py +++ b/src/sssom/util.py @@ -165,7 +165,15 @@ def from_mapping_set_document(cls, doc: MappingSetDocument) -> "MappingSetDataFr # For pandas < 2.0.0, call 'infer_objects()' without any parameters df = df.infer_objects() # remove columns where all values are blank. + + # Context https://github.com/pandas-dev/pandas/issues/57734 + try: + pd.set_option("future.no_silent_downcasting", True) + except KeyError: + # Option does not exist in this version of pandas + pass df.replace("", np.nan, inplace=True) + df.infer_objects(copy=False) df.dropna(axis=1, how="all", inplace=True) # remove columns with all row = 'None'-s. slots = _get_sssom_schema_object().dict["slots"] From a13e22411b393e9bd5dcf64a67766c683fcc351a Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Fri, 8 Nov 2024 23:57:00 +0200 Subject: [PATCH 3/9] comment out df.infer_objects(copy=False) df.infer_objects(copy=False) does not work in a platform independent manner; and I dont even know if I need it --- src/sssom/util.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/sssom/util.py b/src/sssom/util.py index 9874bee1..c33edc33 100644 --- a/src/sssom/util.py +++ b/src/sssom/util.py @@ -173,7 +173,7 @@ def from_mapping_set_document(cls, doc: MappingSetDocument) -> "MappingSetDataFr # Option does not exist in this version of pandas pass df.replace("", np.nan, inplace=True) - df.infer_objects(copy=False) + # df.infer_objects(copy=False) df.dropna(axis=1, how="all", inplace=True) # remove columns with all row = 'None'-s. slots = _get_sssom_schema_object().dict["slots"] From c269ece1da3ef29173ed1b733ad699476ce4938e Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Sat, 9 Nov 2024 11:29:40 +0200 Subject: [PATCH 4/9] Move pd.set_option("future.no_silent_downcasting", True) to __init__ As @gouttegd suggested: > I would rather put that somewhere when the library is initialized, so that we can be sure the option is enabled everywhere at all times and not only when the code path goes through this particular function. I moved that code to __init__.py hopeing that is the right place for it. --- src/sssom/__init__.py | 9 +++++++++ src/sssom/util.py | 7 ------- 2 files changed, 9 insertions(+), 7 deletions(-) diff --git a/src/sssom/__init__.py b/src/sssom/__init__.py index 08f4fafc..596bc802 100644 --- a/src/sssom/__init__.py +++ b/src/sssom/__init__.py @@ -2,6 +2,8 @@ import importlib.metadata +import pandas as pd + try: __version__ = importlib.metadata.version(__name__) except importlib.metadata.PackageNotFoundError: @@ -24,3 +26,10 @@ ) from .constants import generate_mapping_set_id, get_default_metadata # noqa:401 + +# Context https://github.com/pandas-dev/pandas/issues/57734 +try: + pd.set_option("future.no_silent_downcasting", True) +except KeyError: + # Option does not exist in this version of pandas + pass diff --git a/src/sssom/util.py b/src/sssom/util.py index c33edc33..f2ae4f40 100644 --- a/src/sssom/util.py +++ b/src/sssom/util.py @@ -165,13 +165,6 @@ def from_mapping_set_document(cls, doc: MappingSetDocument) -> "MappingSetDataFr # For pandas < 2.0.0, call 'infer_objects()' without any parameters df = df.infer_objects() # remove columns where all values are blank. - - # Context https://github.com/pandas-dev/pandas/issues/57734 - try: - pd.set_option("future.no_silent_downcasting", True) - except KeyError: - # Option does not exist in this version of pandas - pass df.replace("", np.nan, inplace=True) # df.infer_objects(copy=False) df.dropna(axis=1, how="all", inplace=True) # remove columns with all row = 'None'-s. From d0051bc5ccea360289512f5f0b75a2fe6e0f1632 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Sat, 9 Nov 2024 11:31:32 +0200 Subject: [PATCH 5/9] Simplify confidence preprocessing code in from_sssom_dataframe As per @gouttegd suggestion here https://github.com/mapping-commons/sssom-py/pull/561/files#r1835130707, the codeblock has been refactored and simplified. --- src/sssom/parsers.py | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/src/sssom/parsers.py b/src/sssom/parsers.py index 98292943..28f96b43 100644 --- a/src/sssom/parsers.py +++ b/src/sssom/parsers.py @@ -424,9 +424,7 @@ def from_sssom_dataframe( # Need to revisit this solution. # This is to address: A value is trying to be set on a copy of a slice from a DataFrame if CONFIDENCE in df.columns: - df2 = df.copy() - df2[CONFIDENCE] = df2[CONFIDENCE].replace(r"^\s*$", np.nan, regex=True) - df = df2 + df.replace({CONFIDENCE: r"^\s*$"}, np.nan, regex=True, inplace=True) mapping_set = _get_mapping_set_from_df(df=df, meta=meta) doc = MappingSetDocument(mapping_set=mapping_set, converter=converter) From e0cbe73a73ac95b9c915306505f30df1530ba070 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Sat, 9 Nov 2024 11:36:04 +0200 Subject: [PATCH 6/9] Refactor df.infer_object call to account for diverging pandas versions To ensure the old behaviour is retained, @gouttegd convinced me to not be lazy and actually add the "df.infer_objects" functionality when replacing empty values with nan's. Should github still exist when you read this, you can find his feedback here: https://github.com/mapping-commons/sssom-py/pull/561/files#r1835148927 As he questions, it is not clear this is _strictly needed_, but its probably safer to so if we dont know if its needed. --- src/sssom/util.py | 17 ++++++++++------- 1 file changed, 10 insertions(+), 7 deletions(-) diff --git a/src/sssom/util.py b/src/sssom/util.py index f2ae4f40..30861868 100644 --- a/src/sssom/util.py +++ b/src/sssom/util.py @@ -158,15 +158,9 @@ def from_mapping_set_document(cls, doc: MappingSetDocument) -> "MappingSetDataFr df = pd.DataFrame(get_dict_from_mapping(mapping) for mapping in doc.mapping_set.mappings) meta = _extract_global_metadata(doc) - if pandas_version >= (2, 0, 0): - # For pandas >= 2.0.0, use the 'copy' parameter - df = df.infer_objects(copy=False) - else: - # For pandas < 2.0.0, call 'infer_objects()' without any parameters - df = df.infer_objects() # remove columns where all values are blank. df.replace("", np.nan, inplace=True) - # df.infer_objects(copy=False) + df = _safe_infer_objects(df) df.dropna(axis=1, how="all", inplace=True) # remove columns with all row = 'None'-s. slots = _get_sssom_schema_object().dict["slots"] @@ -1494,3 +1488,12 @@ def safe_compress(uri: str, converter: Converter) -> str: :return: A CURIE """ return converter.compress_or_standardize(uri, strict=True) + + +def _safe_infer_objects(df): + """Infer object types in a DataFrame, compatible with multiple pandas versions.""" + _pandas_version = tuple(map(int, pd.__version__.split(".")[:2])) + if _pandas_version >= (2, 0): + return df.infer_objects(copy=False) + else: + return df.infer_objects() From 634b1d9fa47a0eeb77678a5bdc2b5e9d4d18b9a4 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Sat, 9 Nov 2024 16:33:52 +0200 Subject: [PATCH 7/9] Move future.no_silent_downcasting to cli.py The rationale is to not force this global option on all users of the library. The main point for the fix is so that sssom-py's CLI print to stdout functionality is not compromised by this output! --- src/sssom/__init__.py | 9 - src/sssom/cli.py | 4 + src/sssom/util.py | 9 + tests/validate_data/basic.tsv.owl | 2336 ++++++++++++++--------------- 4 files changed, 1181 insertions(+), 1177 deletions(-) diff --git a/src/sssom/__init__.py b/src/sssom/__init__.py index 596bc802..08f4fafc 100644 --- a/src/sssom/__init__.py +++ b/src/sssom/__init__.py @@ -2,8 +2,6 @@ import importlib.metadata -import pandas as pd - try: __version__ = importlib.metadata.version(__name__) except importlib.metadata.PackageNotFoundError: @@ -26,10 +24,3 @@ ) from .constants import generate_mapping_set_id, get_default_metadata # noqa:401 - -# Context https://github.com/pandas-dev/pandas/issues/57734 -try: - pd.set_option("future.no_silent_downcasting", True) -except KeyError: - # Option does not exist in this version of pandas - pass diff --git a/src/sssom/cli.py b/src/sssom/cli.py index 9762d700..3bd8b72a 100644 --- a/src/sssom/cli.py +++ b/src/sssom/cli.py @@ -54,6 +54,7 @@ filter_redundant_rows, invert_mappings, merge_msdf, + pandas_set_no_silent_downcasting, reconcile_prefix_and_data, remove_unmatched, sort_df_rows_columns, @@ -126,6 +127,9 @@ def main(verbose: int, quiet: bool): """Run the SSSOM CLI.""" logger = _logging.getLogger() + + pandas_set_no_silent_downcasting() + if verbose >= 2: logger.setLevel(level=_logging.DEBUG) elif verbose == 1: diff --git a/src/sssom/util.py b/src/sssom/util.py index 30861868..dbe734a3 100644 --- a/src/sssom/util.py +++ b/src/sssom/util.py @@ -1497,3 +1497,12 @@ def _safe_infer_objects(df): return df.infer_objects(copy=False) else: return df.infer_objects() + + +def pandas_set_no_silent_downcasting(no_silent_downcasting=True): + """Set pandas future.no_silent_downcasting option. Context https://github.com/pandas-dev/pandas/issues/57734.""" + try: + pd.set_option("future.no_silent_downcasting", no_silent_downcasting) + except KeyError: + # Option does not exist in this version of pandas + pass diff --git a/tests/validate_data/basic.tsv.owl b/tests/validate_data/basic.tsv.owl index 61df1b10..977e16cb 100644 --- a/tests/validate_data/basic.tsv.owl +++ b/tests/validate_data/basic.tsv.owl @@ -224,186 +224,188 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:region ; + owl:annotatedTarget z:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_label "REGION" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_label "region" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_element ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource y:lung ; + owl:annotatedTarget x:lung ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "lung" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "lungs" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.818562e-01 ; + owl:annotatedSource x:lung ; + owl:annotatedTarget z:lung ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendage" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "lung" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:organ ; + owl:annotatedSource x:region ; + owl:annotatedTarget z:region ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; + sssom:object_label "REGION" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "region" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget z:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "TISSUE" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "tissue" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; - owl:annotatedTarget x:liver ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 5.34602e-01 ; sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "liver" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; + sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; - owl:annotatedTarget x:liver ; + owl:annotatedSource z:eye ; + owl:annotatedTarget y:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; + sssom:object_label "eyes" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "organ" ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "ORGAN" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:lung ; + owl:annotatedTarget y:lung ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "lung" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_label "lungs" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_label "lung" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 7.64651e-01 ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget x:tissue ; + sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone element" ; + sssom:match_string "tissue" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; + sssom:object_label "tissue" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field oboInOwl:hasRelatedSynonym ; - sssom:subject_source y:example . + sssom:subject_label "TISSUE" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; + owl:annotatedSource z:bone_tissue ; owl:annotatedTarget x:bone_element ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -411,196 +413,213 @@ x:bone_element a owl:Class ; sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 7.387961e-01 ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget y:foot ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:heart ; + owl:annotatedTarget y:heart ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "heart" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "feet" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "hearts" ; + sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_label "heart" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget z:lung ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "liver" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; - owl:annotatedTarget x:tissue ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:hand ; + owl:annotatedTarget y:hand ; + sssom:confidence 8.212624e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissue" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissue" ; + sssom:object_label "hands" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8.212624e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_label "hands" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget y:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "tissues" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "TISSUE" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 6.967305e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:lung ; + owl:annotatedTarget y:lung ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone el" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasRelatedSynonym ; + sssom:object_label "lungs" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "lung" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:region ; - owl:annotatedTarget z:region ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "bone" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "regions" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002481" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_element ; + owl:annotatedSource y:liver ; + owl:annotatedTarget z:liver ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "livers" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:liver ; - owl:annotatedTarget y:liver ; + owl:annotatedTarget z:organ ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; + sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "liver" ; sssom:subject_match_field oboInOwl:hasDbXref ; @@ -609,50 +628,49 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget y:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:appendage ; - owl:annotatedTarget y:appendage ; + owl:annotatedSource x:liver ; + owl:annotatedTarget y:liver ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "liver" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendages" ; + sssom:object_label "livers" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "APPENDAGE" ; + sssom:subject_label "liver" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eye ; - owl:annotatedTarget x:eye ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eye" ; + sssom:object_label "manus" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -662,157 +680,137 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendages" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; - owl:annotatedTarget z:organ ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget y:tissue ; sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; + sssom:object_label "tissues" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; + sssom:subject_label "tissue" ; sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_label "bones" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0002387" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "feet" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . + [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:eye ; owl:annotatedTarget x:eye ; - sssom:confidence 5.688741e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "ey" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "eye" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "eyes" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; - owl:annotatedTarget y:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organs" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:lung ; - owl:annotatedTarget x:lung ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:region ; + owl:annotatedTarget z:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget y:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendages" ; + sssom:object_label "REGION" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; - sssom:subject_match_field rdfs:label, - skos:prefLabel ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget y:lung ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_label "regions" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:organ ; - owl:annotatedTarget x:lung ; + owl:annotatedTarget x:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; + sssom:object_label "heart" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -825,164 +823,138 @@ x:bone_element a owl:Class ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:heart ; owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "heart" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "hearts" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:tissue ; - owl:annotatedTarget x:tissue ; + owl:annotatedSource y:lung ; + owl:annotatedTarget x:lung ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "lung" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissue" ; + sssom:object_label "lung" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissues" ; + sssom:subject_label "lungs" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2.612039e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:appendage ; + owl:annotatedTarget x:appendage ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "appendage" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "appendages" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:region ; - owl:annotatedTarget x:region ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "REGION" ; + sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . - -[] a owl:Ontology ; - dc1:creator orcid:1234, - orcid:5678 ; - dc1:license "https://creativecommons.org/publicdomain/zero/1.0/"^^xsd:anyURI ; - pav:authoredOn "2020-05-30"^^xsd:date ; - sssom:mapping_set_id "https://w3id.org/sssom/mapping/tests/data/basic.tsv"^^xsd:anyURI ; - sssom:mapping_tool "https://github.com/cmungall/rdf_matcher" . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:lung ; - owl:annotatedTarget x:lung ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lungs" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:foot ; - owl:annotatedTarget x:foot ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_element ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "feet" ; + sssom:subject_label "bone element" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; - sssom:confidence 8e-01 ; + owl:annotatedSource x:hand ; + owl:annotatedTarget y:hand ; + sssom:confidence 8.212624e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; - owl:annotatedTarget y:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissues" ; + sssom:object_label "hands" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_label "manus" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:liver ; - owl:annotatedTarget y:liver ; + owl:annotatedTarget x:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; + sssom:object_label "liver" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -990,214 +962,193 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_tissue ; sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bone tissue" ; sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; + owl:annotatedSource y:lung ; + owl:annotatedTarget z:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; + sssom:subject_label "lungs" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:organ ; - owl:annotatedTarget z:organ ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget y:appendage ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; + sssom:object_label "appendages" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organs" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "appendage" ; + sssom:subject_match_field rdfs:label, + skos:prefLabel ; + sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "mock data" ; + rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource d:something ; - owl:annotatedTarget a:something ; - sssom:confidence 8.2e-01 ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8.497789e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yyyyyy" ; - sssom:object_match_field rdfs:label ; - sssom:object_source a:example ; - sssom:predicate_modifier "Not" ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YYYYY" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source d:example . + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget y:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource a:something ; - owl:annotatedTarget c:something ; - sssom:confidence 8.3e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:organ ; + owl:annotatedTarget z:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "xyxyxy" ; + sssom:object_label "ORGAN" ; sssom:object_match_field rdfs:label ; - sssom:object_source c:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "XYXYX" ; + sssom:subject_label "organ" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source a:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget z:organ ; + owl:annotatedSource x:heart ; + owl:annotatedTarget z:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; + sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:tissue ; - owl:annotatedTarget z:tissue ; + owl:annotatedSource y:appendage ; + owl:annotatedTarget z:appendage ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; + sssom:object_label "APPENDAGE" ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissues" ; + sssom:subject_label "appendages" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget y:liver ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource z:lung ; + owl:annotatedTarget y:lung ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "liver" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "lungs" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:organ ; + owl:annotatedTarget z:organ ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_label "ORGAN" ; + sssom:object_match_field rdfs:label ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "organ" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget y:heart ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource z:heart ; + owl:annotatedTarget x:heart ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "heart" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hearts" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_label "heart" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 7.64651e-01 ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8.497789e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone element" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasRelatedSynonym ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "manus" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; @@ -1220,131 +1171,113 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_element ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bone tissue" ; sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:heart ; - owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget z:organ ; + owl:annotatedSource x:hand ; + owl:annotatedTarget y:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; + sssom:object_label "hands" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; + sssom:subject_label "manus" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2e-01 ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 7.64651e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "bone element" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "bones" ; + sssom:object_match_field oboInOwl:hasRelatedSynonym ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "bone element" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hindlimb ; - owl:annotatedTarget x:hindlimb ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; + owl:annotatedSource y:heart ; + owl:annotatedTarget z:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; + sssom:subject_label "hearts" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget z:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "foot" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "pes" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; + owl:annotatedSource y:tissue ; owl:annotatedTarget x:tissue ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -1352,185 +1285,185 @@ x:bone_element a owl:Class ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:organ ; - owl:annotatedTarget x:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; - sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organs" ; + sssom:subject_label "tissues" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; - owl:annotatedTarget y:eye ; + owl:annotatedSource x:heart ; + owl:annotatedTarget y:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; + sssom:object_label "hearts" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; + sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + rdfs:comment "mock data" ; + owl:annotatedProperty rdfs:subClassOf ; + owl:annotatedSource a:something ; + owl:annotatedTarget b:something ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "xxxxx" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_label "xxxxxx" ; + sssom:object_match_field rdfs:label ; + sssom:object_source b:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "XXXXX" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source a:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hindlimb ; - owl:annotatedTarget z:hindlimb ; - sssom:confidence 8.818562e-01 ; + owl:annotatedSource z:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; - sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_label "pes" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:lung ; - owl:annotatedTarget y:lung ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:eye ; + owl:annotatedTarget y:eye ; + sssom:confidence 5.688741e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "ey" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; + sssom:object_label "eyes" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; + sssom:subject_label "eye" ; sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:foot ; - owl:annotatedTarget z:foot ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "feet" ; + sssom:subject_label "manus" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget y:foot ; + owl:annotatedSource x:heart ; + owl:annotatedTarget z:organ ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "feet" ; + sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; + sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget z:hand ; + owl:annotatedSource y:eye ; + owl:annotatedTarget x:eye ; + sssom:confidence 5.688741e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "ey" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "eye" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "eyes" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:foot ; + owl:annotatedTarget y:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "feet" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; + sssom:subject_label "pes" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; @@ -1550,38 +1483,20 @@ x:bone_element a owl:Class ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource c:something ; - owl:annotatedTarget b:something ; - sssom:confidence 8.4e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yxyxyx" ; - sssom:object_match_field rdfs:label ; - sssom:object_source b:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YXYXY" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source c:example . - [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; - sssom:confidence 8.497789e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; + sssom:subject_label "manus" ; sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . @@ -1605,87 +1520,69 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:liver ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; + owl:annotatedSource y:bone ; owl:annotatedTarget z:bone_tissue ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002481" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource c:something ; - owl:annotatedTarget d:something ; - sssom:confidence 8.1e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yyyyyy" ; - sssom:object_match_field rdfs:label ; - sssom:object_source d:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YYYYY" ; + sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source c:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:bone_element ; owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; + sssom:confidence 6.967305e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "bone el" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bones" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasRelatedSynonym ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:liver ; - owl:annotatedTarget x:liver ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:tissue ; + owl:annotatedTarget z:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_label "TISSUE" ; + sssom:object_match_field rdfs:label ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "tissues" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:eyeball ; + owl:annotatedTarget x:eyeball ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0010230" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "eyeball" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -1693,51 +1590,87 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2e-01 ; + owl:annotatedSource z:organ ; + owl:annotatedTarget y:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "organ" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "organs" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "ORGAN" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 8e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "foot" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "pes" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:organ ; + owl:annotatedTarget x:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "organ" ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "organs" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:hindlimb ; + owl:annotatedTarget x:hindlimb ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "hindlimb" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "hindlimb" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "hindlimb" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . + [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:region ; - owl:annotatedTarget y:region ; + owl:annotatedTarget x:region ; sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "regions" ; + sssom:object_label "region" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "REGION" ; sssom:subject_match_field rdfs:label ; @@ -1746,14 +1679,67 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:liver ; + owl:annotatedTarget z:liver ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "liver" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:liver ; + owl:annotatedTarget x:liver ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "liver" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "liver" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "livers" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0001474" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bones" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 8.497789e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "foot" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "pes" ; sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -1763,237 +1749,295 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget y:hand ; + owl:annotatedSource z:hindlimb ; + owl:annotatedTarget x:hindlimb ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "hindlimb" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "hindlimb" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "hindlimb" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:eye ; + owl:annotatedTarget y:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; + sssom:object_label "eyes" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; + sssom:subject_label "eye" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget z:bone_element ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget z:appendage ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "appendage" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "APPENDAGE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "appendage" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:appendage ; - owl:annotatedTarget x:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "UBERON:0002481" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendage" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendages" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "mock data" ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource d:something ; + owl:annotatedTarget a:something ; + sssom:confidence 8.2e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "xxxxx" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "yyyyyy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source a:example ; + sssom:predicate_modifier "Not" ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "YYYYY" ; sssom:subject_match_field rdfs:label ; + sssom:subject_source d:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:liver ; + owl:annotatedTarget x:liver ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0002107" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "liver" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "livers" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource y:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "hands" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "mock data" ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource a:something ; + owl:annotatedTarget c:something ; + sssom:confidence 8.3e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "xxxxx" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "xyxyxy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source c:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "XYXYX" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source a:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:organ ; + owl:annotatedTarget y:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "organs" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "organ" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:lung ; - owl:annotatedTarget z:lung ; + owl:annotatedSource x:lung ; + owl:annotatedTarget z:organ ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lungs" ; + sssom:subject_label "lung" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget z:region ; + owl:annotatedSource y:region ; + owl:annotatedTarget x:region ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; + sssom:object_label "region" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; + sssom:subject_label "regions" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource z:eye ; + owl:annotatedTarget x:eye ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "eye" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget y:lung ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource y:eye ; + owl:annotatedTarget z:eye ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "lung" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_label "eyes" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; + owl:annotatedSource x:bone_element ; owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bones" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8.497789e-01 ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; + sssom:object_label "bones" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:appendage ; - owl:annotatedTarget x:appendage ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedTarget y:appendage ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendage" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendage" ; + sssom:object_label "appendages" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "APPENDAGE" ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty rdfs:subClassOf ; - owl:annotatedSource a:something ; - owl:annotatedTarget b:something ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "xxxxxx" ; - sssom:object_match_field rdfs:label ; - sssom:object_source b:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "XXXXX" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source a:example . - [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:bone_element ; owl:annotatedTarget z:bone_element ; - sssom:confidence 2e-01 ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; @@ -2008,138 +2052,183 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_element ; - sssom:confidence 2.612039e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget z:appendage ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "APPENDAGE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "appendage" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hindlimb ; - owl:annotatedTarget z:hindlimb ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 6.967305e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "bone el" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; + sssom:object_label "bone element" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; + sssom:subject_label "bones" ; + sssom:subject_match_field oboInOwl:hasRelatedSynonym ; + sssom:subject_source y:example . + +[] a owl:Ontology ; + dc1:creator orcid:1234, + orcid:5678 ; + dc1:license "https://creativecommons.org/publicdomain/zero/1.0/"^^xsd:anyURI ; + pav:authoredOn "2020-05-30"^^xsd:date ; + sssom:mapping_set_id "https://w3id.org/sssom/mapping/tests/data/basic.tsv"^^xsd:anyURI ; + sssom:mapping_tool "https://github.com/cmungall/rdf_matcher" . + +[] a owl:Axiom ; + rdfs:comment "mock data" ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource c:something ; + owl:annotatedTarget d:something ; + sssom:confidence 8.1e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "xxxxx" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "yyyyyy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source d:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "YYYYY" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source c:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eye ; - owl:annotatedTarget y:eye ; + owl:annotatedSource x:liver ; + owl:annotatedTarget y:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; + sssom:object_label "livers" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "liver" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:heart ; - owl:annotatedTarget y:heart ; + owl:annotatedSource x:foot ; + owl:annotatedTarget z:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hearts" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "pes" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; + owl:annotatedTarget y:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; + sssom:object_label "feet" ; sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source y:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:region ; + owl:annotatedTarget x:region ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "region" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "region" ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "REGION" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget y:region ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "UBERON:0002481" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "regions" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "." ; + rdfs:comment "mock data" ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget y:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource c:something ; + owl:annotatedTarget b:something ; + sssom:confidence 8.4e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "xxxxx" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organs" ; + sssom:object_label "yxyxyx" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source b:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "YXYXY" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source c:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:bone_element ; - owl:annotatedTarget y:bone ; + owl:annotatedTarget x:bone_element ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -2147,14 +2236,14 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_tissue ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_element ; sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; + sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -2164,259 +2253,254 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; + owl:annotatedSource z:lung ; + owl:annotatedTarget x:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; + sssom:object_label "lung" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource y:bone ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; - sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget z:organ ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:region ; + owl:annotatedTarget y:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_label "regions" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_label "REGION" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:heart ; owl:annotatedTarget x:heart ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "heart" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "heart" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "hearts" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; - owl:annotatedTarget z:eye ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget y:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource x:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 8.497789e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "foot" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissues" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "pes" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget z:liver ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget z:tissue ; + sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "tissue" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "TISSUE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "tissue" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:region ; - owl:annotatedTarget x:region ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "regions" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hindlimb ; - owl:annotatedTarget x:hindlimb ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:region ; + owl:annotatedTarget y:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; + sssom:object_label "regions" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; + sssom:subject_label "region" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:region ; - owl:annotatedTarget x:region ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget x:tissue ; sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; + sssom:object_label "tissue" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "REGION" ; + sssom:subject_label "TISSUE" ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; - owl:annotatedTarget y:eye ; - sssom:confidence 5.688741e-01 ; + owl:annotatedSource z:heart ; + owl:annotatedTarget y:heart ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "ey" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "hearts" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; + owl:annotatedSource y:bone ; owl:annotatedTarget x:bone_element ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:confidence 7.64651e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "bone element" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bones" ; + sssom:subject_match_field oboInOwl:hasRelatedSynonym ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget z:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource y:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_label "hands" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; + owl:annotatedSource y:organ ; owl:annotatedTarget z:organ ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -2424,48 +2508,49 @@ x:bone_element a owl:Class ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; + sssom:subject_label "organs" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; - owl:annotatedTarget z:liver ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "lung" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eyeball ; - owl:annotatedTarget x:eyeball ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0010230" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyeball" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:eye ; + owl:annotatedSource x:eye ; owl:annotatedTarget z:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; @@ -2475,201 +2560,134 @@ x:bone_element a owl:Class ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eyes" ; + sssom:subject_label "eye" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_element ; + owl:annotatedSource z:liver ; + owl:annotatedTarget y:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "livers" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget y:heart ; + owl:annotatedSource y:foot ; + owl:annotatedTarget x:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hearts" ; + sssom:object_label "pes" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; + sssom:subject_label "feet" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget z:region ; + owl:annotatedSource x:hindlimb ; + owl:annotatedTarget z:hindlimb ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "hindlimb" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; + sssom:object_label "hindlimb" ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; + sssom:subject_label "hindlimb" ; sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 6.967305e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:hindlimb ; + owl:annotatedTarget z:hindlimb ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone el" ; + sssom:match_string "hindlimb" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; + sssom:object_label "hindlimb" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field oboInOwl:hasRelatedSynonym ; - sssom:subject_source y:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; - sssom:confidence 8.497789e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "hindlimb" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:lung ; - owl:annotatedTarget x:lung ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource y:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8.212624e-01 ; sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "lung" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lungs" ; + sssom:subject_label "hands" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:heart ; - owl:annotatedTarget z:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hearts" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8.497789e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget z:tissue ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:organ ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissue" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; + sssom:object_label "organ" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource z:appendage ; + owl:annotatedTarget x:appendage ; + sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "appendage" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "appendage" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "APPENDAGE" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; @@ -2688,22 +2706,4 @@ x:bone_element a owl:Class ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:eye ; - owl:annotatedTarget x:eye ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eye" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eyes" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . - From d2b244e309e39d5199ba686f56df386db9775209 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Sat, 9 Nov 2024 16:45:17 +0200 Subject: [PATCH 8/9] Dropping copy=False from pd.DataFrame.infer_objects As explained by @gouttegd in https://github.com/mapping-commons/sssom-py/pull/561#discussion_r1835405243, we do not actually benefit from the small performance gain enabled by copy=False here, so we decided to drop it (which means a considerable simplification of the code as well) --- src/sssom/util.py | 11 +---------- 1 file changed, 1 insertion(+), 10 deletions(-) diff --git a/src/sssom/util.py b/src/sssom/util.py index dbe734a3..6684f9a1 100644 --- a/src/sssom/util.py +++ b/src/sssom/util.py @@ -160,7 +160,7 @@ def from_mapping_set_document(cls, doc: MappingSetDocument) -> "MappingSetDataFr # remove columns where all values are blank. df.replace("", np.nan, inplace=True) - df = _safe_infer_objects(df) + df = df.infer_objects() df.dropna(axis=1, how="all", inplace=True) # remove columns with all row = 'None'-s. slots = _get_sssom_schema_object().dict["slots"] @@ -1490,15 +1490,6 @@ def safe_compress(uri: str, converter: Converter) -> str: return converter.compress_or_standardize(uri, strict=True) -def _safe_infer_objects(df): - """Infer object types in a DataFrame, compatible with multiple pandas versions.""" - _pandas_version = tuple(map(int, pd.__version__.split(".")[:2])) - if _pandas_version >= (2, 0): - return df.infer_objects(copy=False) - else: - return df.infer_objects() - - def pandas_set_no_silent_downcasting(no_silent_downcasting=True): """Set pandas future.no_silent_downcasting option. Context https://github.com/pandas-dev/pandas/issues/57734.""" try: From fbee866c7d781b44de2af569b133dcd109447790 Mon Sep 17 00:00:00 2001 From: Nico Matentzoglu Date: Sat, 9 Nov 2024 16:47:35 +0200 Subject: [PATCH 9/9] Undo change to a data file which does not belong in this PR --- tests/validate_data/basic.tsv.owl | 2318 ++++++++++++++--------------- 1 file changed, 1159 insertions(+), 1159 deletions(-) diff --git a/tests/validate_data/basic.tsv.owl b/tests/validate_data/basic.tsv.owl index 977e16cb..61df1b10 100644 --- a/tests/validate_data/basic.tsv.owl +++ b/tests/validate_data/basic.tsv.owl @@ -224,188 +224,186 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget z:region ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "manus" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:lung ; - owl:annotatedTarget x:lung ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lungs" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget z:lung ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget z:appendage ; + sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "appendage" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "APPENDAGE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "appendage" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget z:region ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:organ ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; + sssom:object_label "organ" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget z:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 5.34602e-01 ; + owl:annotatedSource y:liver ; + owl:annotatedTarget x:liver ; + sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "liver" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "liver" ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "livers" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eye ; - owl:annotatedTarget y:eye ; + owl:annotatedSource y:liver ; + owl:annotatedTarget x:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; + sssom:object_label "liver" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "livers" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget y:lung ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:heart ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "lung" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_label "heart" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_label "ORGAN" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; - owl:annotatedTarget x:tissue ; - sssom:confidence 8.818562e-01 ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 7.64651e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissue" ; + sssom:match_string "bone element" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissue" ; + sssom:object_label "bone element" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_label "bones" ; + sssom:subject_match_field oboInOwl:hasRelatedSynonym ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; + owl:annotatedSource y:bone ; owl:annotatedTarget x:bone_element ; - sssom:confidence 2.612039e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -413,224 +411,172 @@ x:bone_element a owl:Class ; sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bones" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2.612039e-01 ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget y:heart ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource z:foot ; + owl:annotatedTarget y:foot ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "heart" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hearts" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "feet" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:liver ; + owl:annotatedSource x:lung ; + owl:annotatedTarget z:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "lung" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget y:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget x:tissue ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "tissue" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; + sssom:object_label "tissue" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_label "TISSUE" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8.212624e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "bones" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; - owl:annotatedTarget y:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissues" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget y:lung ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; + sssom:subject_label "bone element" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:bone ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bones" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; + owl:annotatedSource x:bone_element ; owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:confidence 6.967305e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "bone el" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bones" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasRelatedSynonym ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 2.612039e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; - owl:annotatedTarget z:liver ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:region ; + owl:annotatedTarget z:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "REGION" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "regions" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget z:organ ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "UBERON:0002481" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; + sssom:object_label "bone tissue" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:bone_tissue ; owl:annotatedTarget z:bone_element ; - sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; @@ -647,85 +593,68 @@ x:bone_element a owl:Class ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:liver ; owl:annotatedTarget y:liver ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "liver" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; + sssom:object_label "livers" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "liver" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:hand ; + owl:annotatedTarget y:hand ; + sssom:confidence 8.212624e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "hands" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "manus" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget y:tissue ; + owl:annotatedSource z:appendage ; + owl:annotatedTarget y:appendage ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissues" ; + sssom:object_label "appendages" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; + sssom:subject_label "APPENDAGE" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget y:bone ; + owl:annotatedSource z:eye ; + owl:annotatedTarget x:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "eye" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -733,231 +662,199 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:foot ; - owl:annotatedTarget z:foot ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:appendage ; + owl:annotatedTarget z:appendage ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "APPENDAGE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "feet" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "appendages" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:eye ; - owl:annotatedTarget x:eye ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:organ ; + owl:annotatedTarget z:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eye" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_label "ORGAN" ; + sssom:object_match_field rdfs:label ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eyes" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_label "organ" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_tissue ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_element ; sssom:confidence 2.612039e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:region ; - owl:annotatedTarget z:region ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:eye ; + owl:annotatedTarget x:eye ; + sssom:confidence 5.688741e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "ey" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "REGION" ; + sssom:object_label "eye" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "regions" ; + sssom:subject_label "eyes" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:organ ; + owl:annotatedTarget y:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:heart ; - owl:annotatedTarget x:heart ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "heart" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "heart" ; + sssom:object_label "organs" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hearts" ; + sssom:subject_label "organ" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:lung ; + owl:annotatedSource z:lung ; owl:annotatedTarget x:lung ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "lung" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "lung" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lungs" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:appendage ; - owl:annotatedTarget x:appendage ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget y:appendage ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendage" ; + sssom:object_label "appendages" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendages" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "appendage" ; + sssom:subject_match_field rdfs:label, + skos:prefLabel ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:lung ; + owl:annotatedTarget y:lung ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_label "lungs" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "lung" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2e-01 ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:lung ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "lung" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "ORGAN" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_element ; + owl:annotatedSource y:heart ; + owl:annotatedTarget x:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "heart" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; + sssom:subject_label "hearts" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget y:hand ; - sssom:confidence 8.212624e-01 ; + owl:annotatedSource y:tissue ; + owl:annotatedTarget x:tissue ; + sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; + sssom:object_label "tissue" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:liver ; - owl:annotatedTarget x:liver ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; - sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_label "tissues" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; @@ -976,18 +873,45 @@ x:bone_element a owl:Class ; sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:region ; + owl:annotatedTarget x:region ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "region" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "region" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "REGION" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source z:example . + +[] a owl:Ontology ; + dc1:creator orcid:1234, + orcid:5678 ; + dc1:license "https://creativecommons.org/publicdomain/zero/1.0/"^^xsd:anyURI ; + pav:authoredOn "2020-05-30"^^xsd:date ; + sssom:mapping_set_id "https://w3id.org/sssom/mapping/tests/data/basic.tsv"^^xsd:anyURI ; + sssom:mapping_tool "https://github.com/cmungall/rdf_matcher" . + [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:lung ; - owl:annotatedTarget z:lung ; + owl:annotatedTarget x:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "lung" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "lungs" ; sssom:subject_match_field oboInOwl:hasDbXref ; @@ -996,33 +920,32 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget y:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource y:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendages" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_label "pes" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; - sssom:subject_match_field rdfs:label, - skos:prefLabel ; - sssom:subject_source x:example . + sssom:subject_label "feet" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8.497789e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "foot" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; + sssom:object_label "pes" ; sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -1032,80 +955,79 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; - owl:annotatedTarget z:organ ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget y:tissue ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; + sssom:object_label "tissues" ; sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; + sssom:subject_label "TISSUE" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget z:heart ; + owl:annotatedSource z:liver ; + owl:annotatedTarget y:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "livers" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; - sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendages" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:lung ; - owl:annotatedTarget y:lung ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lungs" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "manus" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; + owl:annotatedSource y:organ ; owl:annotatedTarget z:organ ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -1113,231 +1035,184 @@ x:bone_element a owl:Class ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; + sssom:subject_label "organs" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:heart ; - owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source y:example . [] a owl:Axiom ; - rdfs:comment "." ; + rdfs:comment "mock data" ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8.497789e-01 ; + owl:annotatedSource d:something ; + owl:annotatedTarget a:something ; + sssom:confidence 8.2e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "xxxxx" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "yyyyyy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source a:example ; + sssom:predicate_modifier "Not" ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source x:example . + sssom:subject_label "YYYYY" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source d:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:hand ; owl:annotatedTarget y:hand ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 8.212624e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "hands" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; sssom:subject_source z:example . [] a owl:Axiom ; - rdfs:comment "." ; + rdfs:comment "mock data" ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_element ; + owl:annotatedSource a:something ; + owl:annotatedTarget c:something ; + sssom:confidence 8.3e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "xxxxx" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "xyxyxy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source c:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "XYXYX" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source a:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget y:hand ; + owl:annotatedSource x:lung ; + owl:annotatedTarget z:organ ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hands" ; + sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; + sssom:subject_label "lung" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 7.64651e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone element" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasRelatedSynonym ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:heart ; - owl:annotatedTarget z:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:tissue ; + owl:annotatedTarget z:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "TISSUE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hearts" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "tissues" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource x:liver ; + owl:annotatedTarget y:liver ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; + sssom:match_string "liver" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "livers" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_label "liver" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:tissue ; - owl:annotatedTarget x:tissue ; - sssom:confidence 8.407144e-01 ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissue" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "bone element" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissues" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:heart ; owl:annotatedTarget y:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "heart" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "hearts" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "heart" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty rdfs:subClassOf ; - owl:annotatedSource a:something ; - owl:annotatedTarget b:something ; - sssom:confidence 8e-01 ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 7.64651e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "bone element" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "xxxxxx" ; - sssom:object_match_field rdfs:label ; - sssom:object_source b:example ; + sssom:object_label "bones" ; + sssom:object_match_field oboInOwl:hasRelatedSynonym ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "XXXXX" ; + sssom:subject_label "bone element" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source a:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; + owl:annotatedSource z:hand ; + owl:annotatedTarget y:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; + sssom:object_label "hands" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -1345,10 +1220,10 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; + owl:annotatedSource z:bone_tissue ; owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -1362,104 +1237,85 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource z:heart ; + owl:annotatedTarget x:heart ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source x:example ; + sssom:object_label "heart" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; - owl:annotatedTarget y:eye ; - sssom:confidence 5.688741e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "ey" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; + owl:annotatedSource x:heart ; + owl:annotatedTarget z:organ ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; + sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:heart ; - owl:annotatedTarget z:organ ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "heart" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:eye ; - owl:annotatedTarget x:eye ; - sssom:confidence 5.688741e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:hindlimb ; + owl:annotatedTarget x:hindlimb ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "ey" ; + sssom:match_string "hindlimb" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eye" ; + sssom:object_label "hindlimb" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eyes" ; + sssom:subject_label "hindlimb" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:foot ; - owl:annotatedTarget y:foot ; + owl:annotatedTarget z:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "feet" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "pes" ; sssom:subject_match_field oboInOwl:hasDbXref ; @@ -1468,52 +1324,71 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:appendage ; - owl:annotatedTarget x:appendage ; + owl:annotatedSource x:heart ; + owl:annotatedTarget z:heart ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0000948" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "heart" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:tissue ; + owl:annotatedTarget x:tissue ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendage" ; + sssom:object_label "tissue" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "APPENDAGE" ; + sssom:subject_label "TISSUE" ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:organ ; + owl:annotatedTarget x:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "organ" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "manus" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source x:example . + sssom:subject_label "organs" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eyeball ; - owl:annotatedTarget z:eyeball ; + owl:annotatedSource x:eye ; + owl:annotatedTarget y:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0010230" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "eyes" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eyeball" ; + sssom:subject_label "eye" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . @@ -1521,14 +1396,15 @@ x:bone_element a owl:Class ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:bone ; - owl:annotatedTarget z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; sssom:confidence 5.34602e-01 ; sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "bone tissue" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "bones" ; sssom:subject_match_field rdfs:label ; @@ -1537,52 +1413,51 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget y:bone ; - sssom:confidence 6.967305e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:hindlimb ; + owl:annotatedTarget z:hindlimb ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone el" ; + sssom:match_string "hindlimb" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasRelatedSynonym ; - sssom:object_source y:example ; + sssom:object_label "hindlimb" ; + sssom:object_match_field rdfs:label ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; + sssom:subject_label "hindlimb" ; sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:tissue ; - owl:annotatedTarget z:tissue ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8.212624e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissues" ; + sssom:subject_label "hands" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eyeball ; - owl:annotatedTarget x:eyeball ; + owl:annotatedSource z:lung ; + owl:annotatedTarget y:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0010230" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyeball" ; + sssom:object_label "lungs" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -1590,454 +1465,535 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget y:organ ; + owl:annotatedSource x:appendage ; + owl:annotatedTarget z:appendage ; sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organs" ; + sssom:object_label "APPENDAGE" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "appendage" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; - sssom:confidence 8e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . + sssom:subject_label "feet" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:organ ; - owl:annotatedTarget x:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource x:foot ; + owl:annotatedTarget y:foot ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; - sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_label "feet" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organs" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "pes" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hindlimb ; - owl:annotatedTarget x:hindlimb ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource y:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; - sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_label "hands" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:region ; - owl:annotatedTarget x:region ; + owl:annotatedSource z:appendage ; + owl:annotatedTarget x:appendage ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; + sssom:object_label "appendage" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "REGION" ; + sssom:subject_label "APPENDAGE" ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . +[] a owl:Axiom ; + rdfs:comment "mock data" ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource c:something ; + owl:annotatedTarget b:something ; + sssom:confidence 8.4e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "xxxxx" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "yxyxyx" ; + sssom:object_match_field rdfs:label ; + sssom:object_source b:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "YXYXY" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source c:example . + [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget z:liver ; + owl:annotatedSource x:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 8.497789e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "foot" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "pes" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source x:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:eyeball ; + owl:annotatedTarget z:eyeball ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "UBERON:0010230" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; + sssom:subject_label "eyeball" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; + owl:annotatedSource z:organ ; owl:annotatedTarget x:liver ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "liver" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "liver" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_label "ORGAN" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_tissue ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "UBERON:0002481" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "bone tissue" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "." ; + rdfs:comment "mock data" ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:foot ; - owl:annotatedTarget x:foot ; - sssom:confidence 8.497789e-01 ; + owl:annotatedSource c:something ; + owl:annotatedTarget d:something ; + sssom:confidence 8.1e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; + sssom:match_string "xxxxx" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source x:example ; + sssom:object_label "yyyyyy" ; + sssom:object_match_field rdfs:label ; + sssom:object_source d:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; - sssom:subject_source z:example . + sssom:subject_label "YYYYY" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source c:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:hindlimb ; - owl:annotatedTarget x:hindlimb ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; - owl:annotatedTarget y:eye ; + owl:annotatedSource z:liver ; + owl:annotatedTarget x:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eyes" ; + sssom:object_label "liver" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:bone_tissue ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendage" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; - sssom:object_match_field rdfs:label ; - sssom:object_source z:example ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; + owl:annotatedSource y:hand ; + owl:annotatedTarget x:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002481" ; + sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; + sssom:object_label "manus" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "hands" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source y:example . [] a owl:Axiom ; - rdfs:comment "mock data" ; + rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource d:something ; - owl:annotatedTarget a:something ; - sssom:confidence 8.2e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:region ; + owl:annotatedTarget y:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yyyyyy" ; + sssom:object_label "regions" ; sssom:object_match_field rdfs:label ; - sssom:object_source a:example ; - sssom:predicate_modifier "Not" ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YYYYY" ; + sssom:subject_label "REGION" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source d:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:liver ; - owl:annotatedTarget x:liver ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "liver" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "livers" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget x:hand ; + owl:annotatedSource x:hand ; + owl:annotatedTarget y:hand ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0002398" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; + sssom:object_label "hands" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; + sssom:subject_label "manus" ; sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:bone ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "bone" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bones" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; - rdfs:comment "mock data" ; + rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource a:something ; - owl:annotatedTarget c:something ; - sssom:confidence 8.3e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:appendage ; + owl:annotatedTarget x:appendage ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "appendag" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "xyxyxy" ; + sssom:object_label "appendage" ; sssom:object_match_field rdfs:label ; - sssom:object_source c:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "XYXYX" ; + sssom:subject_label "appendages" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source a:example . + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_tissue ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "bone" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "bone tissue" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:organ ; - owl:annotatedTarget y:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget y:bone ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organs" ; + sssom:object_label "bones" ; sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organ" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:lung ; - owl:annotatedTarget z:organ ; + owl:annotatedSource y:lung ; + owl:annotatedTarget z:lung ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "UBERON:0002048" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "ORGAN" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "lung" ; + sssom:subject_label "lungs" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:region ; - owl:annotatedTarget x:region ; + owl:annotatedSource x:region ; + owl:annotatedTarget z:region ; sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; + sssom:object_label "REGION" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "regions" ; + sssom:subject_label "region" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:eye ; - owl:annotatedTarget x:eye ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:foot ; + owl:annotatedTarget z:foot ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "foot" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "eye" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_label "pes" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:eye ; - owl:annotatedTarget z:eye ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:lung ; + owl:annotatedTarget y:lung ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000970" ; + sssom:match_string "lung" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_label "lungs" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eyes" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_label "lung" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; + owl:annotatedSource z:bone_element ; owl:annotatedTarget y:bone ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 5.34602e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0001474" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bones" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; + owl:annotatedSource z:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8.497789e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:appendage ; - owl:annotatedTarget y:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedTarget x:appendage ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "appendage" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendages" ; + sssom:object_label "appendage" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "APPENDAGE" ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . +[] a owl:Axiom ; + rdfs:comment "mock data" ; + owl:annotatedProperty rdfs:subClassOf ; + owl:annotatedSource a:something ; + owl:annotatedTarget b:something ; + sssom:confidence 8e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "xxxxx" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "xxxxxx" ; + sssom:object_match_field rdfs:label ; + sssom:object_source b:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "XXXXX" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source a:example . + [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource x:bone_element ; owl:annotatedTarget z:bone_element ; - sssom:confidence 2.612039e-01 ; + sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; @@ -2052,183 +2008,138 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:appendage ; - owl:annotatedTarget z:appendage ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:bone_tissue ; + owl:annotatedTarget z:bone_element ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendag" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "APPENDAGE" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "appendage" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "bone tissue" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget x:bone_element ; - sssom:confidence 6.967305e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone el" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; - sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field oboInOwl:hasRelatedSynonym ; - sssom:subject_source y:example . - -[] a owl:Ontology ; - dc1:creator orcid:1234, - orcid:5678 ; - dc1:license "https://creativecommons.org/publicdomain/zero/1.0/"^^xsd:anyURI ; - pav:authoredOn "2020-05-30"^^xsd:date ; - sssom:mapping_set_id "https://w3id.org/sssom/mapping/tests/data/basic.tsv"^^xsd:anyURI ; - sssom:mapping_tool "https://github.com/cmungall/rdf_matcher" . - -[] a owl:Axiom ; - rdfs:comment "mock data" ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource c:something ; - owl:annotatedTarget d:something ; - sssom:confidence 8.1e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:hindlimb ; + owl:annotatedTarget z:hindlimb ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "hindlimb" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yyyyyy" ; + sssom:object_label "hindlimb" ; sssom:object_match_field rdfs:label ; - sssom:object_source d:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YYYYY" ; + sssom:subject_label "hindlimb" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source c:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:liver ; - owl:annotatedTarget y:liver ; + owl:annotatedSource z:eye ; + owl:annotatedTarget y:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; + sssom:object_label "eyes" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "liver" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; + owl:annotatedSource z:heart ; + owl:annotatedTarget y:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "hearts" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:foot ; - owl:annotatedTarget y:foot ; + owl:annotatedTarget x:foot ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0002387" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "feet" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; - sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . - -[] a owl:Axiom ; - rdfs:comment "." ; - owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:region ; - owl:annotatedTarget x:region ; - sssom:confidence 8.818562e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; - sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; - sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "region" ; - sssom:object_match_field rdfs:label ; + sssom:object_label "pes" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "REGION" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:region ; + owl:annotatedTarget y:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002481" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source z:example ; + sssom:object_label "regions" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_label "region" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; - rdfs:comment "mock data" ; + rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource c:something ; - owl:annotatedTarget b:something ; - sssom:confidence 8.4e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource z:organ ; + owl:annotatedTarget y:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "xxxxx" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "yxyxyx" ; + sssom:object_label "organs" ; sssom:object_match_field rdfs:label ; - sssom:object_source b:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "YXYXY" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source c:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource z:bone_element ; - owl:annotatedTarget x:bone_element ; + owl:annotatedTarget y:bone ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; + sssom:object_label "bones" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . @@ -2236,14 +2147,14 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_element ; + owl:annotatedSource z:bone_element ; + owl:annotatedTarget x:bone_tissue ; sssom:confidence 2e-01 ; sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone element" ; + sssom:object_label "bone tissue" ; sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; @@ -2253,254 +2164,259 @@ x:bone_element a owl:Class ; [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:lung ; - owl:annotatedTarget x:lung ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002048" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; + sssom:object_label "bone element" ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bones" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; - owl:annotatedTarget z:bone_element ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + owl:annotatedSource z:organ ; + owl:annotatedTarget x:organ ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "organ" ; + sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; + sssom:subject_label "ORGAN" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_tissue ; - owl:annotatedTarget z:bone_tissue ; - sssom:confidence 2e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource y:hand ; + owl:annotatedTarget x:hand ; + sssom:confidence 8.212624e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "hand" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; - sssom:object_source z:example ; + sssom:object_label "manus" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone tissue" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source x:example . + sssom:subject_label "hands" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:region ; - owl:annotatedTarget y:region ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:ManualMappingCuration ; + owl:annotatedSource x:liver ; + owl:annotatedTarget z:organ ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "BAD:ORGAN" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "regions" ; - sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_label "ORGAN" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "REGION" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_label "liver" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; owl:annotatedSource y:heart ; owl:annotatedTarget x:heart ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "heart" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "heart" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; sssom:subject_label "hearts" ; - sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:bone_element ; - owl:annotatedTarget z:bone_element ; - sssom:confidence 2e-01 ; + owl:annotatedSource x:eye ; + owl:annotatedTarget z:eye ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0000970" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bone element" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_label "eye" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:foot ; - owl:annotatedTarget z:foot ; - sssom:confidence 8.497789e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget y:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:UnspecifiedMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "foot" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; - sssom:object_source z:example ; + sssom:object_label "tissues" ; + sssom:object_match_field rdfs:label ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "pes" ; - sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_label "tissue" ; + sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:tissue ; - owl:annotatedTarget z:tissue ; - sssom:confidence 8.818562e-01 ; + owl:annotatedSource x:liver ; + owl:annotatedTarget z:liver ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissue" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "TISSUE" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "tissue" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "liver" ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget y:bone ; - sssom:confidence 5.34602e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:region ; + owl:annotatedTarget x:region ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bones" ; + sssom:object_label "region" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; - sssom:subject_source z:example . + sssom:subject_label "regions" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:region ; - owl:annotatedTarget y:region ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:UnspecifiedMatching ; + owl:annotatedSource z:hindlimb ; + owl:annotatedTarget x:hindlimb ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "region" ; + sssom:match_string "hindlimb" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "regions" ; + sssom:object_label "hindlimb" ; sssom:object_match_field rdfs:label ; - sssom:object_source y:example ; + sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "region" ; + sssom:subject_label "hindlimb" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source x:example . + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:tissue ; - owl:annotatedTarget x:tissue ; + owl:annotatedSource z:region ; + owl:annotatedTarget x:region ; sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:ManualMappingCuration ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "tissu" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "tissue" ; + sssom:object_label "region" ; sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "TISSUE" ; + sssom:subject_label "REGION" ; sssom:subject_match_field rdfs:label ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:heart ; - owl:annotatedTarget y:heart ; - sssom:confidence 7.387961e-01 ; + owl:annotatedSource x:eye ; + owl:annotatedTarget y:eye ; + sssom:confidence 5.688741e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0000948" ; + sssom:match_string "ey" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hearts" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "eyes" ; + sssom:object_match_field rdfs:label ; sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_label "eye" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:bone ; + owl:annotatedSource z:bone_tissue ; owl:annotatedTarget x:bone_element ; - sssom:confidence 7.64651e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LogicalReasoning ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone element" ; + sssom:match_string "bone" ; sssom:object_category "biolink:AnatomicalEntity" ; sssom:object_label "bone element" ; - sssom:object_match_field rdfs:label ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "bones" ; - sssom:subject_match_field oboInOwl:hasRelatedSynonym ; - sssom:subject_source y:example . + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget z:hand ; - sssom:confidence 7.387961e-01 ; - sssom:mapping_justification semapv:LexicalMatching ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget z:tissue ; + sssom:confidence 8.407144e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002398" ; + sssom:match_string "tissu" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_label "TISSUE" ; + sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; - sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_label "tissue" ; + sssom:subject_match_field rdfs:label ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:organ ; + owl:annotatedSource x:organ ; owl:annotatedTarget z:organ ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; + sssom:confidence 8.818562e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; sssom:match_string "organ" ; sssom:object_category "biolink:AnatomicalEntity" ; @@ -2508,49 +2424,48 @@ x:bone_element a owl:Class ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "organs" ; + sssom:subject_label "organ" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:lung ; + owl:annotatedSource y:liver ; + owl:annotatedTarget z:liver ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "BAD:ORGAN" ; + sssom:match_string "UBERON:0002107" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "lung" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; + sssom:subject_label "livers" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:bone_tissue ; - owl:annotatedTarget x:bone_tissue ; - sssom:confidence 2.612039e-01 ; + owl:annotatedSource z:eyeball ; + owl:annotatedTarget x:eyeball ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "bone" ; + sssom:match_string "UBERON:0010230" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "bone tissue" ; - sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_label "eyeball" ; + sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source z:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:eye ; + owl:annotatedSource y:eye ; owl:annotatedTarget z:eye ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; @@ -2560,134 +2475,201 @@ x:bone_element a owl:Class ; sssom:object_match_field oboInOwl:hasDbXref ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "eye" ; + sssom:subject_label "eyes" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source x:example . + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:liver ; - owl:annotatedTarget y:liver ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_element ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002107" ; + sssom:match_string "UBERON:0001474" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "livers" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source y:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bone element" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source z:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:foot ; - owl:annotatedTarget x:foot ; + owl:annotatedSource x:heart ; + owl:annotatedTarget y:heart ; sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "UBERON:0002387" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "pes" ; + sssom:object_label "hearts" ; sssom:object_match_field oboInOwl:hasDbXref ; - sssom:object_source x:example ; + sssom:object_source y:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "feet" ; + sssom:subject_label "heart" ; sssom:subject_match_field oboInOwl:hasDbXref ; - sssom:subject_source y:example . + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hindlimb ; - owl:annotatedTarget z:hindlimb ; + owl:annotatedSource x:region ; + owl:annotatedTarget z:region ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "region" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; + sssom:object_label "REGION" ; sssom:object_match_field rdfs:label ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; + sssom:subject_label "region" ; sssom:subject_match_field rdfs:label ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource x:hindlimb ; - owl:annotatedTarget z:hindlimb ; - sssom:confidence 8.407144e-01 ; - sssom:mapping_justification semapv:LogicalReasoning ; + owl:annotatedSource y:bone ; + owl:annotatedTarget x:bone_element ; + sssom:confidence 6.967305e-01 ; + sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hindlimb" ; + sssom:match_string "bone el" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "hindlimb" ; + sssom:object_label "bone element" ; sssom:object_match_field rdfs:label ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bones" ; + sssom:subject_match_field oboInOwl:hasRelatedSynonym ; + sssom:subject_source y:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource z:foot ; + owl:annotatedTarget x:foot ; + sssom:confidence 8.497789e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "foot" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "pes" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source z:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "bone" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hindlimb" ; - sssom:subject_match_field rdfs:label ; + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource y:hand ; - owl:annotatedTarget x:hand ; - sssom:confidence 8.212624e-01 ; + owl:annotatedSource y:lung ; + owl:annotatedTarget x:lung ; + sssom:confidence 8.407144e-01 ; sssom:mapping_justification semapv:SemanticSimilarityThresholdMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "hand" ; + sssom:match_string "lung" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "manus" ; - sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_label "lung" ; + sssom:object_match_field rdfs:label ; sssom:object_source x:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "hands" ; + sssom:subject_label "lungs" ; sssom:subject_match_field rdfs:label ; sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:organ ; - owl:annotatedTarget x:organ ; - sssom:confidence 8.818562e-01 ; + owl:annotatedSource y:heart ; + owl:annotatedTarget z:heart ; + sssom:confidence 7.387961e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "organ" ; + sssom:match_string "UBERON:0000948" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "organ" ; - sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "ORGAN" ; - sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_label "hearts" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . [] a owl:Axiom ; rdfs:comment "." ; owl:annotatedProperty owl:equivalentClass ; - owl:annotatedSource z:appendage ; - owl:annotatedTarget x:appendage ; + owl:annotatedSource x:hand ; + owl:annotatedTarget z:hand ; + sssom:confidence 8.497789e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "hand" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_match_field oboInOwl:hasExactSynonym ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "manus" ; + sssom:subject_match_field oboInOwl:hasExactSynonym ; + sssom:subject_source x:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:tissue ; + owl:annotatedTarget z:tissue ; sssom:confidence 8.818562e-01 ; sssom:mapping_justification semapv:LexicalMatching ; sssom:mapping_tool "rdf_matcher" ; - sssom:match_string "appendage" ; + sssom:match_string "tissue" ; sssom:object_category "biolink:AnatomicalEntity" ; - sssom:object_label "appendage" ; + sssom:object_label "TISSUE" ; sssom:object_match_field rdfs:label ; - sssom:object_source x:example ; + sssom:object_source z:example ; sssom:subject_category "biolink:AnatomicalEntity" ; - sssom:subject_label "APPENDAGE" ; + sssom:subject_label "tissue" ; sssom:subject_match_field rdfs:label ; - sssom:subject_source z:example . + sssom:subject_source x:example . + +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource x:bone_element ; + owl:annotatedTarget z:bone_tissue ; + sssom:confidence 2.612039e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "bone" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_match_field oboInOwl:hasBroadSynonym ; + sssom:object_source z:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "bone element" ; + sssom:subject_match_field oboInOwl:hasBroadSynonym ; + sssom:subject_source x:example . [] a owl:Axiom ; rdfs:comment "." ; @@ -2706,4 +2688,22 @@ x:bone_element a owl:Class ; sssom:subject_match_field oboInOwl:hasDbXref ; sssom:subject_source y:example . +[] a owl:Axiom ; + rdfs:comment "." ; + owl:annotatedProperty owl:equivalentClass ; + owl:annotatedSource y:eye ; + owl:annotatedTarget x:eye ; + sssom:confidence 7.387961e-01 ; + sssom:mapping_justification semapv:LexicalMatching ; + sssom:mapping_tool "rdf_matcher" ; + sssom:match_string "UBERON:0000970" ; + sssom:object_category "biolink:AnatomicalEntity" ; + sssom:object_label "eye" ; + sssom:object_match_field oboInOwl:hasDbXref ; + sssom:object_source x:example ; + sssom:subject_category "biolink:AnatomicalEntity" ; + sssom:subject_label "eyes" ; + sssom:subject_match_field oboInOwl:hasDbXref ; + sssom:subject_source y:example . +