From 515624a236b46f8773bb72712199a8a6c5e74cec Mon Sep 17 00:00:00 2001
From: Harshad Hegde <hegdehb@gmail.com>
Date: Tue, 20 Jun 2023 15:26:21 -0500
Subject: [PATCH] updated by sphinx and workflow corrected

---
 .github/workflows/deploy-docs.yml |  2 +-
 docs/modules.rst                  |  6 +--
 docs/sssom.rst                    | 65 ++++++++++++++++++++++++-------
 3 files changed, 54 insertions(+), 19 deletions(-)

diff --git a/.github/workflows/deploy-docs.yml b/.github/workflows/deploy-docs.yml
index 83226736..20b4196e 100644
--- a/.github/workflows/deploy-docs.yml
+++ b/.github/workflows/deploy-docs.yml
@@ -31,7 +31,7 @@ jobs:
         cd docs/
         poetry run sphinx-apidoc -o . ../src/sssom/ --ext-autodoc -f
         poetry run sphinx-build -b html . _build
-        cp -r _build/html/* ../gh-pages/
+        cp -r _build/* ../gh-pages/
     
     - name: Deploy documentation.
       if: ${{ github.event_name == 'push' }}
diff --git a/docs/modules.rst b/docs/modules.rst
index bc097940..b060fe79 100644
--- a/docs/modules.rst
+++ b/docs/modules.rst
@@ -1,9 +1,7 @@
-Technical Documentation
-========
+sssom
+=====
 
 .. toctree::
    :maxdepth: 4
 
-   api
    sssom
-   sphinx
diff --git a/docs/sssom.rst b/docs/sssom.rst
index b1c6ef75..198a8ea4 100644
--- a/docs/sssom.rst
+++ b/docs/sssom.rst
@@ -1,5 +1,8 @@
-SSSOM Submodules
-================
+sssom package
+=============
+
+Submodules
+----------
 
 sssom.cli module
 ----------------
@@ -17,6 +20,22 @@ sssom.cliques module
    :undoc-members:
    :show-inheritance:
 
+sssom.cliquesummary module
+--------------------------
+
+.. automodule:: sssom.cliquesummary
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
+sssom.constants module
+----------------------
+
+.. automodule:: sssom.constants
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 sssom.context module
 --------------------
 
@@ -25,6 +44,14 @@ sssom.context module
    :undoc-members:
    :show-inheritance:
 
+sssom.external\_context module
+------------------------------
+
+.. automodule:: sssom.external_context
+   :members:
+   :undoc-members:
+   :show-inheritance:
+
 sssom.io module
 ---------------
 
@@ -32,7 +59,6 @@ sssom.io module
    :members:
    :undoc-members:
    :show-inheritance:
-   :noindex:
 
 sssom.parsers module
 --------------------
@@ -42,23 +68,21 @@ sssom.parsers module
    :undoc-members:
    :show-inheritance:
 
-sssom.sparql\_util module
--------------------------
+sssom.rdf\_util module
+----------------------
 
-.. automodule:: sssom.sparql_util
+.. automodule:: sssom.rdf_util
    :members:
    :undoc-members:
    :show-inheritance:
-   :noindex:
 
-sssom.sssom\_datamodel module
------------------------------
+sssom.sparql\_util module
+-------------------------
 
-.. automodule:: sssom.sssom_datamodel
+.. automodule:: sssom.sparql_util
    :members:
    :undoc-members:
    :show-inheritance:
-   :noindex:
 
 sssom.sssom\_document module
 ----------------------------
@@ -67,7 +91,14 @@ sssom.sssom\_document module
    :members:
    :undoc-members:
    :show-inheritance:
-   :noindex:
+
+sssom.typehints module
+----------------------
+
+.. automodule:: sssom.typehints
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 sssom.util module
 -----------------
@@ -76,7 +107,14 @@ sssom.util module
    :members:
    :undoc-members:
    :show-inheritance:
-   :noindex:
+
+sssom.validators module
+-----------------------
+
+.. automodule:: sssom.validators
+   :members:
+   :undoc-members:
+   :show-inheritance:
 
 sssom.writers module
 --------------------
@@ -86,7 +124,6 @@ sssom.writers module
    :undoc-members:
    :show-inheritance:
 
-
 Module contents
 ---------------