diff --git a/tests/data/basic-meta-external.yml b/tests/data/basic-meta-external.yml index 3a85e6be..ab72f98c 100644 --- a/tests/data/basic-meta-external.yml +++ b/tests/data/basic-meta-external.yml @@ -13,4 +13,4 @@ curie_map: b: "http://example.org/b/" c: "http://example.org/c/" d: "http://example.org/d/" - oio: "http://www.geneontology.org/formats/oboInOwl#" + oboInOwl: "http://www.geneontology.org/formats/oboInOwl#" diff --git a/tests/data/basic.owl.ttl b/tests/data/basic.owl.ttl index cb03d880..c05d9bd6 100644 --- a/tests/data/basic.owl.ttl +++ b/tests/data/basic.owl.ttl @@ -8,7 +8,7 @@ @prefix xml: . @prefix xsd: . @prefix rdfs: . -@prefix oio: . +@prefix oboInOwl: . @prefix xref: . @prefix skos: . @prefix UBERON: . @@ -69,13 +69,13 @@ x:liver a owl:Class ; category: anatomy: ; x:bone_element a owl:Class ; category: anatomy: ; rdfs:label "bone element" ; xref: "UBERON:0001474" ; ## bone element - oio:hasBroadSynonym "bone" ; + oboInOwl:hasBroadSynonym "bone" ; rdfs:subClassOf x:organ . x:bone_tissue a owl:Class ; category: anatomy: ; rdfs:label "bone tissue" ; xref: "UBERON:0002481" ; ## bone tissue - oio:hasBroadSynonym "bone" ; + oboInOwl:hasBroadSynonym "bone" ; rdfs:subClassOf x:tissue . x:eyeball a owl:Class ; category: anatomy: ; @@ -90,19 +90,19 @@ x:eye a owl:Class ; category: anatomy: ; x:hand a owl:Class ; category: anatomy: ; rdfs:label "manus" ; - oio:hasExactSynonym "hand" ; + oboInOwl:hasExactSynonym "hand" ; xref: "UBERON:0002398" ; ## manus rdfs:subClassOf x:appendage . x:foot a owl:Class ; category: anatomy: ; rdfs:label "pes" ; - oio:hasExactSynonym "foot" ; + oboInOwl:hasExactSynonym "foot" ; xref: "UBERON:0002387" ; ## pes rdfs:subClassOf x:appendage . x:obsolete_leg a owl:Class ; category: anatomy: ; rdfs:label "leg" ; - oio:hasRelatedSynonym "hindlimb" ; + oboInOwl:hasRelatedSynonym "hindlimb" ; owl:deprecated "true"^^xsd:boolean . x:hindlimb a owl:Class ; category: anatomy: ; @@ -139,7 +139,7 @@ y:liver a owl:Class ; category: anatomy: ; y:bone a owl:Class ; category: anatomy: ; rdfs:label "bones" ; xref: "UBERON:0001474" ; ## bone element - oio:hasRelatedSynonym "bone element" ; + oboInOwl:hasRelatedSynonym "bone element" ; rdfs:subClassOf y:organ . y:eye a owl:Class ; category: anatomy: ; @@ -159,7 +159,7 @@ y:foot a owl:Class ; category: anatomy: ; y:leg a owl:Class ; category: anatomy: ; rdfs:label "legs" ; - oio:hasExactSynonym "leg" ; + oboInOwl:hasExactSynonym "leg" ; rdfs:subClassOf y:appendage . ## Z ontology @@ -188,12 +188,12 @@ z:liver a owl:Class ; category: anatomy: ; z:bone_element a owl:Class ; category: anatomy: ; xref: "UBERON:0001474" ; ## bone element - oio:hasBroadSynonym "bone" ; + oboInOwl:hasBroadSynonym "bone" ; rdfs:subClassOf z:organ . z:bone_tissue a owl:Class ; category: anatomy: ; xref: "UBERON:0002481" ; ## bone tissue - oio:hasBroadSynonym "bone" ; + oboInOwl:hasBroadSynonym "bone" ; rdfs:subClassOf z:tissue . z:eyeball a owl:Class ; category: anatomy: ; @@ -205,12 +205,12 @@ z:eye a owl:Class ; category: anatomy: ; rdfs:subClassOf z:organ . z:hand a owl:Class ; category: anatomy: ; - oio:hasExactSynonym "hand" ; + oboInOwl:hasExactSynonym "hand" ; xref: "UBERON:0002398" ; ## manus rdfs:subClassOf z:appendage . z:foot a owl:Class ; category: anatomy: ; - oio:hasExactSynonym "foot" ; + oboInOwl:hasExactSynonym "foot" ; xref: "UBERON:0002387" ; ## pes rdfs:subClassOf z:appendage . diff --git a/tests/data/basic2.tsv b/tests/data/basic2.tsv index 40666a33..dce397f5 100644 --- a/tests/data/basic2.tsv +++ b/tests/data/basic2.tsv @@ -8,7 +8,7 @@ # a: "http://example.org/a/" # rdfs: "http://www.w3.org/2000/01/rdf-schema#" # owl: "http://www.w3.org/2002/07/owl#" -# oio: "http://www.geneontology.org/formats/oboInOwl#" +# oboInOwl: "http://www.geneontology.org/formats/oboInOwl#" # x: "http://example.org/x/" # y: "http://example.org/y/" # z: "http://example.org/z/" @@ -22,48 +22,48 @@ x:FOO FOO owl:equivalentClass y:FOO FOO semapv:SemanticSimilarityThresholdMatch x:appendage appendage owl:equivalentClass y:appendage appendages semapv:ManualMappingCuration x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity appendag . x:appendage appendage owl:equivalentClass z:appendage APPENDAGE semapv:ManualMappingCuration x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity appendag . x:appendage appendage owl:equivalentClass z:appendage APPENDAGE semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity appendage . -x:bone_element bone element owl:equivalentClass y:bone bones semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . -x:bone_element bone element owl:equivalentClass y:bone bones semapv:ManualMappingCuration x:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_element bone element owl:equivalentClass y:bone bones semapv:ManualMappingCuration x:example y:example rdf_matcher 0.696730455 rdfs:label oio:hasRelatedSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone el . -x:bone_element bone element owl:equivalentClass y:bone bones semapv:LexicalMatching x:example y:example rdf_matcher 0.764651037 rdfs:label oio:hasRelatedSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone element . -x:bone_element bone element owl:equivalentClass z:bone_element semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . -x:bone_element bone element owl:equivalentClass z:bone_element semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_element bone element owl:equivalentClass z:bone_element semapv:ManualMappingCuration x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_element bone element owl:equivalentClass z:bone_tissue semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_element bone element owl:equivalentClass z:bone_tissue semapv:ManualMappingCuration x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_tissue bone tissue owl:equivalentClass y:bone bones semapv:ManualMappingCuration x:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_tissue bone tissue owl:equivalentClass z:bone_element semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_tissue bone tissue owl:equivalentClass z:bone_element semapv:ManualMappingCuration x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_tissue bone tissue owl:equivalentClass z:bone_tissue semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002481 . -x:bone_tissue bone tissue owl:equivalentClass z:bone_tissue semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:bone_tissue bone tissue owl:equivalentClass z:bone_tissue semapv:ManualMappingCuration x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -x:eye eye owl:equivalentClass y:eye eyes semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . +x:bone_element bone element owl:equivalentClass y:bone bones semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . +x:bone_element bone element owl:equivalentClass y:bone bones semapv:ManualMappingCuration x:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_element bone element owl:equivalentClass y:bone bones semapv:ManualMappingCuration x:example y:example rdf_matcher 0.696730455 rdfs:label oboInOwl:hasRelatedSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone el . +x:bone_element bone element owl:equivalentClass y:bone bones semapv:LexicalMatching x:example y:example rdf_matcher 0.764651037 rdfs:label oboInOwl:hasRelatedSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone element . +x:bone_element bone element owl:equivalentClass z:bone_element semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . +x:bone_element bone element owl:equivalentClass z:bone_element semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_element bone element owl:equivalentClass z:bone_element semapv:ManualMappingCuration x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_element bone element owl:equivalentClass z:bone_tissue semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_element bone element owl:equivalentClass z:bone_tissue semapv:ManualMappingCuration x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_tissue bone tissue owl:equivalentClass y:bone bones semapv:ManualMappingCuration x:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_tissue bone tissue owl:equivalentClass z:bone_element semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_tissue bone tissue owl:equivalentClass z:bone_element semapv:ManualMappingCuration x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_tissue bone tissue owl:equivalentClass z:bone_tissue semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002481 . +x:bone_tissue bone tissue owl:equivalentClass z:bone_tissue semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:bone_tissue bone tissue owl:equivalentClass z:bone_tissue semapv:ManualMappingCuration x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +x:eye eye owl:equivalentClass y:eye eyes semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . x:eye eye owl:equivalentClass y:eye eyes semapv:ManualMappingCuration x:example y:example rdf_matcher 0.568874072 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity ey . -x:eye eye owl:equivalentClass z:eye semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . -x:eyeball eyeball owl:equivalentClass z:eyeball semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0010230 . -x:foot pes owl:equivalentClass y:foot feet semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . -x:foot pes owl:equivalentClass z:foot semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . -x:foot pes owl:equivalentClass z:foot semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity foot . -x:foot pes owl:equivalentClass z:foot semapv:ManualMappingCuration x:example z:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity foot . -x:hand manus owl:equivalentClass y:hand hands semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . -x:hand manus owl:equivalentClass y:hand hands semapv:ManualMappingCuration x:example y:example rdf_matcher 0.821262391 oio:hasExactSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity hand . -x:hand manus owl:equivalentClass z:hand semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . -x:hand manus owl:equivalentClass z:hand semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . -x:hand manus owl:equivalentClass z:hand semapv:ManualMappingCuration x:example z:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . -x:heart heart owl:equivalentClass y:heart hearts semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . +x:eye eye owl:equivalentClass z:eye semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . +x:eyeball eyeball owl:equivalentClass z:eyeball semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0010230 . +x:foot pes owl:equivalentClass y:foot feet semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . +x:foot pes owl:equivalentClass z:foot semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . +x:foot pes owl:equivalentClass z:foot semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity foot . +x:foot pes owl:equivalentClass z:foot semapv:ManualMappingCuration x:example z:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity foot . +x:hand manus owl:equivalentClass y:hand hands semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . +x:hand manus owl:equivalentClass y:hand hands semapv:ManualMappingCuration x:example y:example rdf_matcher 0.821262391 oboInOwl:hasExactSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity hand . +x:hand manus owl:equivalentClass z:hand semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . +x:hand manus owl:equivalentClass z:hand semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . +x:hand manus owl:equivalentClass z:hand semapv:ManualMappingCuration x:example z:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . +x:heart heart owl:equivalentClass y:heart hearts semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . x:heart heart owl:equivalentClass y:heart hearts semapv:ManualMappingCuration x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity heart . -x:heart heart owl:equivalentClass z:heart semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . -x:heart heart owl:equivalentClass z:organ ORGAN semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity BAD:ORGAN . +x:heart heart owl:equivalentClass z:heart semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . +x:heart heart owl:equivalentClass z:organ ORGAN semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity BAD:ORGAN . x:hindlimb hindlimb owl:equivalentClass z:hindlimb hindlimb semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity hindlimb . x:hindlimb hindlimb owl:equivalentClass z:hindlimb hindlimb semapv:ManualMappingCuration x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity hindlimb . -x:liver liver owl:equivalentClass y:liver livers semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002107 . +x:liver liver owl:equivalentClass y:liver livers semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002107 . x:liver liver owl:equivalentClass y:liver livers semapv:ManualMappingCuration x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity liver . -x:liver liver owl:equivalentClass z:liver semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002107 . -x:liver liver owl:equivalentClass z:organ ORGAN semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity BAD:ORGAN . -x:lung lung owl:equivalentClass y:lung lungs semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002048 . +x:liver liver owl:equivalentClass z:liver semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002107 . +x:liver liver owl:equivalentClass z:organ ORGAN semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity BAD:ORGAN . +x:lung lung owl:equivalentClass y:lung lungs semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002048 . x:lung lung owl:equivalentClass y:lung lungs semapv:LogicalReasoning x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity lung . -x:lung lung owl:equivalentClass z:lung semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002048 . -x:lung lung owl:equivalentClass z:organ ORGAN semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity BAD:ORGAN . +x:lung lung owl:equivalentClass z:lung semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002048 . +x:lung lung owl:equivalentClass z:organ ORGAN semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity BAD:ORGAN . x:organ organ owl:equivalentClass y:organ organs semapv:LogicalReasoning x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity organ . x:organ organ owl:equivalentClass z:organ ORGAN semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity organ . x:organ organ owl:equivalentClass z:organ ORGAN semapv:LogicalReasoning x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity organ . @@ -75,32 +75,32 @@ x:tissue tissue owl:equivalentClass z:tissue TISSUE semapv:LogicalReasoning x:e x:tissue tissue owl:equivalentClass z:tissue TISSUE semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity tissue . y:appendage appendages owl:equivalentClass x:appendage appendage semapv:LogicalReasoning y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity appendag . y:appendage appendages owl:equivalentClass z:appendage APPENDAGE semapv:LogicalReasoning y:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity appendag . -y:bone bones owl:equivalentClass x:bone_element bone element semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . -y:bone bones owl:equivalentClass x:bone_element bone element semapv:LogicalReasoning y:example x:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -y:bone bones owl:equivalentClass x:bone_element bone element semapv:LogicalReasoning y:example x:example rdf_matcher 0.696730455 oio:hasRelatedSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone el . -y:bone bones owl:equivalentClass x:bone_element bone element semapv:LexicalMatching y:example x:example rdf_matcher 0.764651037 oio:hasRelatedSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone element . -y:bone bones owl:equivalentClass x:bone_tissue bone tissue semapv:LexicalMatching y:example x:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -y:bone bones owl:equivalentClass z:bone_element semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . -y:bone bones owl:equivalentClass z:bone_element semapv:LexicalMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -y:bone bones owl:equivalentClass z:bone_tissue semapv:LexicalMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -y:eye eyes owl:equivalentClass x:eye eye semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . +y:bone bones owl:equivalentClass x:bone_element bone element semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . +y:bone bones owl:equivalentClass x:bone_element bone element semapv:LogicalReasoning y:example x:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +y:bone bones owl:equivalentClass x:bone_element bone element semapv:LogicalReasoning y:example x:example rdf_matcher 0.696730455 oboInOwl:hasRelatedSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone el . +y:bone bones owl:equivalentClass x:bone_element bone element semapv:LexicalMatching y:example x:example rdf_matcher 0.764651037 oboInOwl:hasRelatedSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone element . +y:bone bones owl:equivalentClass x:bone_tissue bone tissue semapv:LexicalMatching y:example x:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +y:bone bones owl:equivalentClass z:bone_element semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . +y:bone bones owl:equivalentClass z:bone_element semapv:LexicalMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +y:bone bones owl:equivalentClass z:bone_tissue semapv:LexicalMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +y:eye eyes owl:equivalentClass x:eye eye semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . y:eye eyes owl:equivalentClass x:eye eye semapv:LexicalMatching y:example x:example rdf_matcher 0.568874072 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity ey . -y:eye eyes owl:equivalentClass z:eye semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . -y:foot feet owl:equivalentClass x:foot pes semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . -y:foot feet owl:equivalentClass z:foot semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . -y:hand hands owl:equivalentClass x:hand manus semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . -y:hand hands owl:equivalentClass x:hand manus semapv:LexicalMatching y:example x:example rdf_matcher 0.821262391 rdfs:label oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . -y:hand hands owl:equivalentClass z:hand semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . -y:hand hands owl:equivalentClass z:hand semapv:LexicalMatching y:example z:example rdf_matcher 0.821262391 rdfs:label oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . -y:heart hearts owl:equivalentClass x:heart heart semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . +y:eye eyes owl:equivalentClass z:eye semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . +y:foot feet owl:equivalentClass x:foot pes semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . +y:foot feet owl:equivalentClass z:foot semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . +y:hand hands owl:equivalentClass x:hand manus semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . +y:hand hands owl:equivalentClass x:hand manus semapv:LexicalMatching y:example x:example rdf_matcher 0.821262391 rdfs:label oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . +y:hand hands owl:equivalentClass z:hand semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . +y:hand hands owl:equivalentClass z:hand semapv:LexicalMatching y:example z:example rdf_matcher 0.821262391 rdfs:label oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . +y:heart hearts owl:equivalentClass x:heart heart semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . y:heart hearts owl:equivalentClass x:heart heart semapv:LexicalMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity heart . -y:heart hearts owl:equivalentClass z:heart semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . -y:liver livers owl:equivalentClass x:liver liver semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002107 . +y:heart hearts owl:equivalentClass z:heart semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . +y:liver livers owl:equivalentClass x:liver liver semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002107 . y:liver livers owl:equivalentClass x:liver liver semapv:LexicalMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity liver . -y:liver livers owl:equivalentClass z:liver semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002107 . -y:lung lungs owl:equivalentClass x:lung lung semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002048 . +y:liver livers owl:equivalentClass z:liver semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002107 . +y:lung lungs owl:equivalentClass x:lung lung semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002048 . y:lung lungs owl:equivalentClass x:lung lung semapv:LexicalMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity lung . -y:lung lungs owl:equivalentClass z:lung semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002048 . +y:lung lungs owl:equivalentClass z:lung semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002048 . y:organ organs owl:equivalentClass x:organ organ semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity organ . y:organ organs owl:equivalentClass z:organ ORGAN semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity organ . y:region regions owl:equivalentClass x:region region semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity region . @@ -110,33 +110,33 @@ y:tissue tissues owl:equivalentClass z:tissue TISSUE semapv:SemanticSimilarityT z:appendage APPENDAGE owl:equivalentClass x:appendage appendage semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity appendag . z:appendage APPENDAGE owl:equivalentClass x:appendage appendage semapv:LexicalMatching z:example x:example rdf_matcher 0.881856236 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity appendage . z:appendage APPENDAGE owl:equivalentClass y:appendage appendages semapv:SemanticSimilarityThresholdMatching z:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity appendag . -z:bone_element owl:equivalentClass x:bone_element bone element semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . -z:bone_element owl:equivalentClass x:bone_element bone element semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_element owl:equivalentClass x:bone_element bone element semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_element owl:equivalentClass x:bone_tissue bone tissue semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_element owl:equivalentClass x:bone_tissue bone tissue semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_element owl:equivalentClass y:bone bones semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . -z:bone_element owl:equivalentClass y:bone bones semapv:SemanticSimilarityThresholdMatching z:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_tissue owl:equivalentClass x:bone_element bone element semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_tissue owl:equivalentClass x:bone_element bone element semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_tissue owl:equivalentClass x:bone_tissue bone tissue semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002481 . -z:bone_tissue owl:equivalentClass x:bone_tissue bone tissue semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_tissue owl:equivalentClass x:bone_tissue bone tissue semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:bone_tissue owl:equivalentClass y:bone bones semapv:SemanticSimilarityThresholdMatching z:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone . -z:eye owl:equivalentClass x:eye eye semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . -z:eye owl:equivalentClass y:eye eyes semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . -z:eyeball owl:equivalentClass x:eyeball eyeball semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0010230 . -z:foot owl:equivalentClass x:foot pes semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . -z:foot owl:equivalentClass x:foot pes semapv:LexicalMatching z:example x:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity foot . -z:foot owl:equivalentClass x:foot pes semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity foot . -z:foot owl:equivalentClass y:foot feet semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . -z:hand owl:equivalentClass x:hand manus semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . -z:hand owl:equivalentClass x:hand manus semapv:LexicalMatching z:example x:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . -z:hand owl:equivalentClass x:hand manus semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . -z:hand owl:equivalentClass y:hand hands semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . -z:hand owl:equivalentClass y:hand hands semapv:SemanticSimilarityThresholdMatching z:example y:example rdf_matcher 0.821262391 oio:hasExactSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity hand . -z:heart owl:equivalentClass x:heart heart semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . -z:heart owl:equivalentClass y:heart hearts semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . +z:bone_element owl:equivalentClass x:bone_element bone element semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . +z:bone_element owl:equivalentClass x:bone_element bone element semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_element owl:equivalentClass x:bone_element bone element semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_element owl:equivalentClass x:bone_tissue bone tissue semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_element owl:equivalentClass x:bone_tissue bone tissue semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_element owl:equivalentClass y:bone bones semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0001474 . +z:bone_element owl:equivalentClass y:bone bones semapv:SemanticSimilarityThresholdMatching z:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_tissue owl:equivalentClass x:bone_element bone element semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_tissue owl:equivalentClass x:bone_element bone element semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_tissue owl:equivalentClass x:bone_tissue bone tissue semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002481 . +z:bone_tissue owl:equivalentClass x:bone_tissue bone tissue semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_tissue owl:equivalentClass x:bone_tissue bone tissue semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:bone_tissue owl:equivalentClass y:bone bones semapv:SemanticSimilarityThresholdMatching z:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity bone . +z:eye owl:equivalentClass x:eye eye semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . +z:eye owl:equivalentClass y:eye eyes semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000970 . +z:eyeball owl:equivalentClass x:eyeball eyeball semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0010230 . +z:foot owl:equivalentClass x:foot pes semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . +z:foot owl:equivalentClass x:foot pes semapv:LexicalMatching z:example x:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity foot . +z:foot owl:equivalentClass x:foot pes semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity foot . +z:foot owl:equivalentClass y:foot feet semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002387 . +z:hand owl:equivalentClass x:hand manus semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . +z:hand owl:equivalentClass x:hand manus semapv:LexicalMatching z:example x:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . +z:hand owl:equivalentClass x:hand manus semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym biolink:AnatomicalEntity biolink:AnatomicalEntity hand . +z:hand owl:equivalentClass y:hand hands semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0002398 . +z:hand owl:equivalentClass y:hand hands semapv:SemanticSimilarityThresholdMatching z:example y:example rdf_matcher 0.821262391 oboInOwl:hasExactSynonym rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity hand . +z:heart owl:equivalentClass x:heart heart semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . +z:heart owl:equivalentClass y:heart hearts semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref biolink:AnatomicalEntity biolink:AnatomicalEntity UBERON:0000948 . z:hindlimb hindlimb owl:equivalentClass x:hindlimb hindlimb semapv:LexicalMatching z:example x:example rdf_matcher 0.881856236 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity hindlimb . z:hindlimb hindlimb owl:equivalentClass x:hindlimb hindlimb semapv:SemanticSimilarityThresholdMatching z:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity hindlimb . b:something XXXXX owl:equivalentClass a:something xxxxxx semapv:LexicalMatching b:example a:example rdf_matcher 0.8 rdfs:label rdfs:label biolink:AnatomicalEntity biolink:AnatomicalEntity xxxxx mock data diff --git a/tests/data/reconcile_1.tsv b/tests/data/reconcile_1.tsv index 17984f9f..549084a0 100644 --- a/tests/data/reconcile_1.tsv +++ b/tests/data/reconcile_1.tsv @@ -1,7 +1,7 @@ # curie_map: # UBERON: http://purl.obolibrary.org/obo/UBERON_ # ZFS: http://purl.obolibrary.org/obo/ZFS_ -# oio: http://www.geneontology.org/formats/oboInOwl# +# oboInOwl: http://www.geneontology.org/formats/oboInOwl# # owl: http://www.w3.org/2002/07/owl# # rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# # rdfs: http://www.w3.org/2000/01/rdf-schema# @@ -13,6 +13,6 @@ # object_source: ZFS # subject_source: UBERON subject_id subject_label predicate_id object_id mapping_justification subject_source object_source -UBERON:0000069 larval stage oio:hasDbXref ZFS:0000048 semapv:UnspecifiedMatching UBERON ZFS -UBERON:0000105 life cycle stage oio:hasDbXref ZFS:0100000 semapv:UnspecifiedMatching UBERON ZFS -UBERON:0000105 life cycle stage oio:hasDbXref ZFS:0000000 semapv:UnspecifiedMatching UBERON ZFS \ No newline at end of file +UBERON:0000069 larval stage oboInOwl:hasDbXref ZFS:0000048 semapv:UnspecifiedMatching UBERON ZFS +UBERON:0000105 life cycle stage oboInOwl:hasDbXref ZFS:0100000 semapv:UnspecifiedMatching UBERON ZFS +UBERON:0000105 life cycle stage oboInOwl:hasDbXref ZFS:0000000 semapv:UnspecifiedMatching UBERON ZFS \ No newline at end of file diff --git a/tests/data/reconcile_2.tsv b/tests/data/reconcile_2.tsv index 4ab368c7..642cc13d 100644 --- a/tests/data/reconcile_2.tsv +++ b/tests/data/reconcile_2.tsv @@ -1,7 +1,7 @@ # curie_map: # UBERON: http://purl.obolibrary.org/obo/UBERON_ # WBls: http://purl.obolibrary.org/obo/WBls_ -# oio: http://www.geneontology.org/formats/oboInOwl# +# oboInOwl: http://www.geneontology.org/formats/oboInOwl# # owl: http://www.w3.org/2002/07/owl# # rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# # rdfs: http://www.w3.org/2000/01/rdf-schema# @@ -13,7 +13,7 @@ # object_source: WBls # subject_source: UBERON subject_id subject_label predicate_id object_id mapping_justification subject_source object_source -UBERON:0000066 fully formed stage oio:hasDbXref WBls:0000041 semapv:UnspecifiedMatching UBERON WBls -UBERON:0000068 embryo stage oio:hasDbXref WBls:0000003 semapv:UnspecifiedMatching UBERON WBls -UBERON:0000068 embryo stage oio:hasDbXref WBls:0000102 semapv:UnspecifiedMatching UBERON WBls -UBERON:0000068 embryo stage oio:hasDbXref WBls:0000092 semapv:UnspecifiedMatching UBERON WBls \ No newline at end of file +UBERON:0000066 fully formed stage oboInOwl:hasDbXref WBls:0000041 semapv:UnspecifiedMatching UBERON WBls +UBERON:0000068 embryo stage oboInOwl:hasDbXref WBls:0000003 semapv:UnspecifiedMatching UBERON WBls +UBERON:0000068 embryo stage oboInOwl:hasDbXref WBls:0000102 semapv:UnspecifiedMatching UBERON WBls +UBERON:0000068 embryo stage oboInOwl:hasDbXref WBls:0000092 semapv:UnspecifiedMatching UBERON WBls \ No newline at end of file diff --git a/tests/data/test_annotate_sssom.tsv b/tests/data/test_annotate_sssom.tsv index ea6efdb6..d4a2ecd9 100644 --- a/tests/data/test_annotate_sssom.tsv +++ b/tests/data/test_annotate_sssom.tsv @@ -6,7 +6,7 @@ # b: http://example.org/b/ # c: http://example.org/c/ # d: http://example.org/d/ -# oio: http://www.geneontology.org/formats/oboInOwl# +# oboInOwl: http://www.geneontology.org/formats/oboInOwl# # orcid: https://orcid.org/my-orcid?orcid= # owl: http://www.w3.org/2002/07/owl# # rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# @@ -31,47 +31,47 @@ d:something YYYYY biolink:AnatomicalEntity owl:equivalentClass Not a:something y x:appendage appendage biolink:AnatomicalEntity owl:equivalentClass y:appendage appendages biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.840714406 rdfs:label|skos:prefLabel rdfs:label appendag . x:appendage appendage biolink:AnatomicalEntity owl:equivalentClass z:appendage APPENDAGE biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label appendage . x:appendage appendage biolink:AnatomicalEntity owl:equivalentClass z:appendage APPENDAGE biolink:AnatomicalEntity semapv:ManualMappingCuration x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label appendag . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.764651037 rdfs:label oio:hasRelatedSynonym bone element . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.696730455 rdfs:label oio:hasRelatedSynonym bone el . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002481 . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label bone . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:eye eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.764651037 rdfs:label oboInOwl:hasRelatedSynonym bone element . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.696730455 rdfs:label oboInOwl:hasRelatedSynonym bone el . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002481 . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label bone . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:eye eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . x:eye eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.568874072 rdfs:label rdfs:label ey . -x:eye eye biolink:AnatomicalEntity owl:equivalentClass z:eye biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . -x:eyeball eyeball biolink:AnatomicalEntity owl:equivalentClass z:eyeball biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0010230 . -x:foot pes biolink:AnatomicalEntity owl:equivalentClass y:foot feet biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym foot . -x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym foot . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LogicalReasoning x:example y:example rdf_matcher 0.821262391 oio:hasExactSynonym rdfs:label hand . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym hand . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym hand . +x:eye eye biolink:AnatomicalEntity owl:equivalentClass z:eye biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . +x:eyeball eyeball biolink:AnatomicalEntity owl:equivalentClass z:eyeball biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0010230 . +x:foot pes biolink:AnatomicalEntity owl:equivalentClass y:foot feet biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym foot . +x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym foot . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LogicalReasoning x:example y:example rdf_matcher 0.821262391 oboInOwl:hasExactSynonym rdfs:label hand . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym hand . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym hand . x:heart heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LogicalReasoning x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label heart . -x:heart heart biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . -x:heart heart biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . -x:heart heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . +x:heart heart biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . +x:heart heart biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . +x:heart heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . x:hindlimb hindlimb biolink:AnatomicalEntity owl:equivalentClass z:hindlimb hindlimb biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label hindlimb . x:hindlimb hindlimb biolink:AnatomicalEntity owl:equivalentClass z:hindlimb hindlimb biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label hindlimb . -x:liver liver biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . +x:liver liver biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . x:liver liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:UnspecifiedMatching x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label liver . -x:liver liver biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . -x:liver liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . -x:lung lung biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . -x:lung lung biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . -x:lung lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . +x:liver liver biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . +x:liver liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . +x:lung lung biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . +x:lung lung biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . +x:lung lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . x:lung lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:UnspecifiedMatching x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label lung . x:organ organ biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label organ . x:organ organ biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:UnspecifiedMatching x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label organ . @@ -84,32 +84,32 @@ x:tissue tissue biolink:AnatomicalEntity owl:equivalentClass z:tissue TISSUE bi x:tissue tissue biolink:AnatomicalEntity owl:equivalentClass z:tissue TISSUE biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label tissue . y:appendage appendages biolink:AnatomicalEntity owl:equivalentClass x:appendage appendage biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label appendag . y:appendage appendages biolink:AnatomicalEntity owl:equivalentClass z:appendage APPENDAGE biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label appendag . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym bone . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym bone . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.696730455 oio:hasRelatedSynonym rdfs:label bone el . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym bone . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym bone . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.764651037 oio:hasRelatedSynonym rdfs:label bone element . -y:eye eyes biolink:AnatomicalEntity owl:equivalentClass z:eye biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym bone . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym bone . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.696730455 oboInOwl:hasRelatedSynonym rdfs:label bone el . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym bone . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym bone . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.764651037 oboInOwl:hasRelatedSynonym rdfs:label bone element . +y:eye eyes biolink:AnatomicalEntity owl:equivalentClass z:eye biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . y:eye eyes biolink:AnatomicalEntity owl:equivalentClass x:eye eye biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.568874072 rdfs:label rdfs:label ey . -y:eye eyes biolink:AnatomicalEntity owl:equivalentClass x:eye eye biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . -y:foot feet biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -y:foot feet biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -y:hand hands biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.821262391 rdfs:label oio:hasExactSynonym hand . -y:hand hands biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.821262391 rdfs:label oio:hasExactSynonym hand . -y:heart hearts biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . +y:eye eyes biolink:AnatomicalEntity owl:equivalentClass x:eye eye biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . +y:foot feet biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +y:foot feet biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +y:hand hands biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.821262391 rdfs:label oboInOwl:hasExactSynonym hand . +y:hand hands biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.821262391 rdfs:label oboInOwl:hasExactSynonym hand . +y:heart hearts biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . y:heart hearts biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label heart . -y:heart hearts biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . -y:liver livers biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . +y:heart hearts biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . +y:liver livers biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . y:liver livers biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label liver . -y:liver livers biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . -y:lung lungs biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . +y:liver livers biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . +y:lung lungs biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching y:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . y:lung lungs biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label lung . -y:lung lungs biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . +y:lung lungs biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . y:organ organs biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label organ . y:organ organs biolink:AnatomicalEntity owl:equivalentClass x:organ organ biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label organ . y:region regions biolink:AnatomicalEntity owl:equivalentClass x:region region biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label region . @@ -119,45 +119,45 @@ y:tissue tissues biolink:AnatomicalEntity owl:equivalentClass x:tissue tissue b z:appendage APPENDAGE biolink:AnatomicalEntity owl:equivalentClass x:appendage appendage biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label appendag . z:appendage APPENDAGE biolink:AnatomicalEntity owl:equivalentClass x:appendage appendage biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.881856236 rdfs:label rdfs:label appendage . z:appendage APPENDAGE biolink:AnatomicalEntity owl:equivalentClass y:appendage appendages biolink:AnatomicalEntity semapv:LogicalReasoning z:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label appendag . -z:bone_element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LogicalReasoning z:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label bone . -z:bone_element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LogicalReasoning z:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label bone . -z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002481 . -z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -z:eye biolink:AnatomicalEntity owl:equivalentClass x:eye eye biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . -z:eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . -z:eyeball biolink:AnatomicalEntity owl:equivalentClass x:eyeball eyeball biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0010230 . -z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym foot . -z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym foot . -z:foot biolink:AnatomicalEntity owl:equivalentClass y:foot feet biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym hand . -z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:ManualMappingCuration z:example x:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym hand . -z:hand biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -z:hand biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:ManualMappingCuration z:example y:example rdf_matcher 0.821262391 oio:hasExactSynonym rdfs:label hand . -z:heart biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . -z:heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . +z:bone_element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LogicalReasoning z:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label bone . +z:bone_element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +z:bone_element biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LogicalReasoning z:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label bone . +z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_tissue bone tissue biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002481 . +z:bone_tissue biolink:AnatomicalEntity owl:equivalentClass x:bone_element bone element biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +z:eye biolink:AnatomicalEntity owl:equivalentClass x:eye eye biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . +z:eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . +z:eyeball biolink:AnatomicalEntity owl:equivalentClass x:eyeball eyeball biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0010230 . +z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym foot . +z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LogicalReasoning z:example x:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym foot . +z:foot biolink:AnatomicalEntity owl:equivalentClass y:foot feet biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +z:foot biolink:AnatomicalEntity owl:equivalentClass x:foot pes biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym hand . +z:hand biolink:AnatomicalEntity owl:equivalentClass x:hand manus biolink:AnatomicalEntity semapv:ManualMappingCuration z:example x:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym hand . +z:hand biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +z:hand biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:ManualMappingCuration z:example y:example rdf_matcher 0.821262391 oboInOwl:hasExactSynonym rdfs:label hand . +z:heart biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . +z:heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . z:hindlimb hindlimb biolink:AnatomicalEntity owl:equivalentClass x:hindlimb hindlimb biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.881856236 rdfs:label rdfs:label hindlimb . z:hindlimb hindlimb biolink:AnatomicalEntity owl:equivalentClass x:hindlimb hindlimb biolink:AnatomicalEntity semapv:ManualMappingCuration z:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label hindlimb . -z:liver biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . -z:liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . -z:lung biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . -z:lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . +z:liver biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . +z:liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . +z:lung biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . +z:lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:LexicalMatching z:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass y:organ organs biolink:AnatomicalEntity semapv:ManualMappingCuration z:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label organ . z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:organ organ biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.881856236 rdfs:label rdfs:label organ . -z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . -z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . +z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:liver liver biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . +z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:heart heart biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:organ organ biolink:AnatomicalEntity semapv:ManualMappingCuration z:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label organ . -z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . +z:organ ORGAN biolink:AnatomicalEntity owl:equivalentClass x:lung lung biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . z:region REGION biolink:AnatomicalEntity owl:equivalentClass x:region region biolink:AnatomicalEntity semapv:LexicalMatching z:example x:example rdf_matcher 0.881856236 rdfs:label rdfs:label region . z:region REGION biolink:AnatomicalEntity owl:equivalentClass x:region region biolink:AnatomicalEntity semapv:ManualMappingCuration z:example x:example rdf_matcher 0.840714406 rdfs:label rdfs:label region . z:region REGION biolink:AnatomicalEntity owl:equivalentClass y:region regions biolink:AnatomicalEntity semapv:ManualMappingCuration z:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label region . diff --git a/tests/data/test_filter_sssom.tsv b/tests/data/test_filter_sssom.tsv index c06a29a7..a2c795b7 100644 --- a/tests/data/test_filter_sssom.tsv +++ b/tests/data/test_filter_sssom.tsv @@ -6,7 +6,7 @@ # b: http://example.org/b/ # c: http://example.org/c/ # d: http://example.org/d/ -# oio: http://www.geneontology.org/formats/oboInOwl# +# oboInOwl: http://www.geneontology.org/formats/oboInOwl# # orcid: https://orcid.org/my-orcid?orcid= # owl: http://www.w3.org/2002/07/owl# # rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns# @@ -25,47 +25,47 @@ subject_id subject_label subject_category predicate_id predicate_modifier object x:appendage appendage biolink:AnatomicalEntity owl:equivalentClass y:appendage appendages biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.840714406 rdfs:label|skos:prefLabel rdfs:label appendag . x:appendage appendage biolink:AnatomicalEntity owl:equivalentClass z:appendage APPENDAGE biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label appendage . x:appendage appendage biolink:AnatomicalEntity owl:equivalentClass z:appendage APPENDAGE biolink:AnatomicalEntity semapv:ManualMappingCuration x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label appendag . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label bone . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.764651037 rdfs:label oio:hasRelatedSynonym bone element . -x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.696730455 rdfs:label oio:hasRelatedSynonym bone el . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002481 . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.534601961 oio:hasBroadSynonym rdfs:label bone . -x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oio:hasBroadSynonym oio:hasBroadSynonym bone . -x:eye eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label bone . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.764651037 rdfs:label oboInOwl:hasRelatedSynonym bone element . +x:bone_element bone element biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:ManualMappingCuration x:example y:example rdf_matcher 0.696730455 rdfs:label oboInOwl:hasRelatedSynonym bone el . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.2 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002481 . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass y:bone bones biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.534601961 oboInOwl:hasBroadSynonym rdfs:label bone . +x:bone_tissue bone tissue biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.261203875 oboInOwl:hasBroadSynonym oboInOwl:hasBroadSynonym bone . +x:eye eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . x:eye eye biolink:AnatomicalEntity owl:equivalentClass y:eye eyes biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.568874072 rdfs:label rdfs:label ey . -x:eye eye biolink:AnatomicalEntity owl:equivalentClass z:eye biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . -x:eyeball eyeball biolink:AnatomicalEntity owl:equivalentClass z:eyeball biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0010230 . -x:foot pes biolink:AnatomicalEntity owl:equivalentClass y:foot feet biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym foot . -x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym foot . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LogicalReasoning x:example y:example rdf_matcher 0.821262391 oio:hasExactSynonym rdfs:label hand . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.8 oio:hasExactSynonym oio:hasExactSynonym hand . -x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oio:hasExactSynonym oio:hasExactSynonym hand . +x:eye eye biolink:AnatomicalEntity owl:equivalentClass z:eye biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . +x:eyeball eyeball biolink:AnatomicalEntity owl:equivalentClass z:eyeball biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0010230 . +x:foot pes biolink:AnatomicalEntity owl:equivalentClass y:foot feet biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym foot . +x:foot pes biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym foot . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass y:hand hands biolink:AnatomicalEntity semapv:LogicalReasoning x:example y:example rdf_matcher 0.821262391 oboInOwl:hasExactSynonym rdfs:label hand . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.8 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym hand . +x:hand manus biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.849778895 oboInOwl:hasExactSynonym oboInOwl:hasExactSynonym hand . x:heart heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LogicalReasoning x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label heart . -x:heart heart biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . -x:heart heart biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . -x:heart heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . +x:heart heart biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . +x:heart heart biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . +x:heart heart biolink:AnatomicalEntity owl:equivalentClass y:heart hearts biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . x:hindlimb hindlimb biolink:AnatomicalEntity owl:equivalentClass z:hindlimb hindlimb biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label hindlimb . x:hindlimb hindlimb biolink:AnatomicalEntity owl:equivalentClass z:hindlimb hindlimb biolink:AnatomicalEntity semapv:LogicalReasoning x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label hindlimb . -x:liver liver biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . +x:liver liver biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . x:liver liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:UnspecifiedMatching x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label liver . -x:liver liver biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . -x:liver liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . -x:lung lung biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref BAD:ORGAN . -x:lung lung biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . -x:lung lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . +x:liver liver biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . +x:liver liver biolink:AnatomicalEntity owl:equivalentClass y:liver livers biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . +x:lung lung biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref BAD:ORGAN . +x:lung lung biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . +x:lung lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:LexicalMatching x:example y:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . x:lung lung biolink:AnatomicalEntity owl:equivalentClass y:lung lungs biolink:AnatomicalEntity semapv:UnspecifiedMatching x:example y:example rdf_matcher 0.840714406 rdfs:label rdfs:label lung . x:organ organ biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label organ . x:organ organ biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:UnspecifiedMatching x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label organ . @@ -77,16 +77,16 @@ x:tissue tissue biolink:AnatomicalEntity owl:equivalentClass y:tissue tissues b x:tissue tissue biolink:AnatomicalEntity owl:equivalentClass z:tissue TISSUE biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching x:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label tissu . x:tissue tissue biolink:AnatomicalEntity owl:equivalentClass z:tissue TISSUE biolink:AnatomicalEntity semapv:LexicalMatching x:example z:example rdf_matcher 0.881856236 rdfs:label rdfs:label tissue . y:appendage appendages biolink:AnatomicalEntity owl:equivalentClass z:appendage APPENDAGE biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label appendag . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym bone . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0001474 . -y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oio:hasBroadSynonym bone . -y:eye eyes biolink:AnatomicalEntity owl:equivalentClass z:eye biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000970 . -y:foot feet biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002387 . -y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002398 . -y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.821262391 rdfs:label oio:hasExactSynonym hand . -y:heart hearts biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0000948 . -y:liver livers biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002107 . -y:lung lungs biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oio:hasDbXref oio:hasDbXref UBERON:0002048 . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym bone . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_element biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0001474 . +y:bone bones biolink:AnatomicalEntity owl:equivalentClass z:bone_tissue biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.534601961 rdfs:label oboInOwl:hasBroadSynonym bone . +y:eye eyes biolink:AnatomicalEntity owl:equivalentClass z:eye biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000970 . +y:foot feet biolink:AnatomicalEntity owl:equivalentClass z:foot biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002387 . +y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002398 . +y:hand hands biolink:AnatomicalEntity owl:equivalentClass z:hand biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.821262391 rdfs:label oboInOwl:hasExactSynonym hand . +y:heart hearts biolink:AnatomicalEntity owl:equivalentClass z:heart biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0000948 . +y:liver livers biolink:AnatomicalEntity owl:equivalentClass z:liver biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002107 . +y:lung lungs biolink:AnatomicalEntity owl:equivalentClass z:lung biolink:AnatomicalEntity semapv:LexicalMatching y:example z:example rdf_matcher 0.738796125 oboInOwl:hasDbXref oboInOwl:hasDbXref UBERON:0002048 . y:organ organs biolink:AnatomicalEntity owl:equivalentClass z:organ ORGAN biolink:AnatomicalEntity semapv:SemanticSimilarityThresholdMatching y:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label organ . y:region regions biolink:AnatomicalEntity owl:equivalentClass z:region REGION biolink:AnatomicalEntity semapv:LogicalReasoning y:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label region . y:tissue tissues biolink:AnatomicalEntity owl:equivalentClass z:tissue TISSUE biolink:AnatomicalEntity semapv:LogicalReasoning y:example z:example rdf_matcher 0.840714406 rdfs:label rdfs:label tissu .