index.Rmd

--- 
title: Clustered Data
author:  |
  <span class="noem">Michael Clark</span> 
  <a href='https://m-clark.github.io/'>m-clark.github.io</a>
  <img class='arc' src="img/signature-acronym.png" alt="University of Michigan: CSCAR">
  <img class='cscar' src="img/ARC-acronym-signature.png" alt="University of Michigan: Advanced Research Computing"> 
date: "`r Sys.Date()`"
site: bookdown::bookdown_site
output:
  bookdown::gitbook
always_allow_html: yes
documentclass: book
# bibliography: refs.bib
biblio-style: apalike
url: 'https\://m-clark.github.io/clustered-data/'  # evidently the \: is required or you'll get text in the title/toc area
favicon: 'img/R.ico'
github-repo:  'm-clark/clustered-data/'
description: "This document provides a brief comparison of various approaches to dealing with clustered data situations."
---


```{r setup, include=FALSE}
knitr::opts_chunk$set(echo = T, message=F, warning=F, error=F, comment=NA, R.options=list(width=220),   # code 
                      dev.args=list(bg = 'transparent'), dev='svglite',                                 # viz
                      fig.align='center', out.width='75%', fig.asp=.75,                 
                      cache.rebuild=F, cache=T)                                                         # cache
```

```{r loadpacks, include=FALSE, cache=FALSE, results='hide'}
library(magrittr); library(pander); library(plotly); library(tidyverse); library(tidyext); library(visibly)
library(broom); library(htmltools)
mapply(function(o, v) panderOptions(o, v),
       c('keep.trailing.zeros', 'round', 'table.split.table', 'table.split.cells'), 
       c(TRUE, 2, Inf, Inf))
```

```{r bib, include=FALSE}
# automatically create a bib database for R packages
knitr::write_bib(c(.packages(), 'bookdown', 'knitr', 'rmarkdown'), 'packages.bib')
```




##### {-}



```{r rimg, fig.align='center',  out.width=200, echo=FALSE, cache=FALSE}
knitr::include_graphics('img/198R.png', dpi = NA)
```

```{r ccimg, fig.align='center', out.width=0, fig.show='hide', echo=FALSE}
knitr::include_graphics('img/mc_logo.png', dpi = NA)
```