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Cargo.toml
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Cargo.toml
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[package]
name = "fasten"
version = "0.8.3"
authors = ["Lee Katz <[email protected]>"]
#license-file = "LICENSE"
license = "MIT"
description = "A set of scripts to run basic analysis on fastq files"
documentation = "https://github.com/lskatz/fasten/blob/master/README.md"
repository = "https://github.com/lskatz/fasten"
categories = ["command-line-utilities", "science"]
keywords = ["bioinformatics","fastq","streaming"]
readme = "./README.md"
exclude = [
# Docs have been copied over for the purposes of github pages
# and should not be included in the package
"docs/*",
# Do not include the manuscript in the package
"paper/*",
]
[[bin]]
name = "fasten_replace"
path = "src/bin/fasten_replace.rs"
[[bin]]
name = "fasten_mutate"
path = "src/bin/fasten_mutate.rs"
[[bin]]
name = "fasten_regex"
path = "src/bin/fasten_regex.rs"
[[bin]]
name = "fasten_quality_filter"
path = "src/bin/fasten_quality_filter.rs"
[[bin]]
name = "fasten_trim"
path = "src/bin/fasten_trim.rs"
[[bin]]
name = "fasten_combine"
path = "src/bin/fasten_combine.rs"
[[bin]]
name = "fasten_kmer"
path = "src/bin/fasten_kmer.rs"
[[bin]]
name = "fasten_pe"
path = "src/bin/fasten_pe.rs"
[[bin]]
name = "fasten_convert"
path = "src/bin/fasten_convert.rs"
[[bin]]
name = "fasten_straighten"
path = "src/bin/fasten_straighten.rs"
[[bin]]
name = "fasten_metrics"
path = "src/bin/fasten_metrics.rs"
[[bin]]
name = "fasten_clean"
path = "src/bin/fasten_clean.rs"
[[bin]]
name = "fasten_shuffle"
path = "src/bin/fasten_shuffle.rs"
[[bin]]
name = "fasten_randomize"
path = "src/bin/fasten_randomize.rs"
[[bin]]
name = "fasten_sample"
path = "src/bin/fasten_sample.rs"
[[bin]]
name = "fasten_validate"
path = "src/bin/fasten_validate.rs"
[[bin]]
name = "fasten_inspect"
path = "src/bin/fasten_inspect.rs"
[[bin]]
name = "fasten_repair"
path = "src/bin/fasten_repair.rs"
[[bin]]
name = "fasten_progress"
path = "src/bin/fasten_progress.rs"
[[bin]]
name = "fasten_sort"
path = "src/bin/fasten_sort.rs"
[[bin]]
name = "fasten_normalize"
path = "src/bin/fasten_normalize.rs"
[dependencies]
regex = "1.10"
getopts = "0.2.21"
statistical = "1.0"
multiqueue = "0.3.2"
rand = "0.8"
fastq = "0.6"
threadpool = "1.8.1"
bam = "0.1.4"