From 28c2a52bc4cea5c545e661a9101d92c7e9b8f815 Mon Sep 17 00:00:00 2001
From: Lucille Delisle <lucille.delisle@epfl.ch>
Date: Fri, 13 Dec 2024 10:29:09 +0100
Subject: [PATCH] fix maxproj again

---
 tools/max_projections_stack_and_upload_omero/CHANGELOG.md     | 4 ++++
 .../max_projections_stack_and_upload_omero.xml                | 2 +-
 .../stack_max_projs.groovy                                    | 4 ++--
 3 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/tools/max_projections_stack_and_upload_omero/CHANGELOG.md b/tools/max_projections_stack_and_upload_omero/CHANGELOG.md
index 963b8ca..603811a 100644
--- a/tools/max_projections_stack_and_upload_omero/CHANGELOG.md
+++ b/tools/max_projections_stack_and_upload_omero/CHANGELOG.md
@@ -1,5 +1,9 @@
 # CHANGELOG
 
+## 20241213.1
+
+- Fixed a forgotten nT
+
 ## 20241213
 
 - Remove unused input plateName in wrapper.
diff --git a/tools/max_projections_stack_and_upload_omero/max_projections_stack_and_upload_omero.xml b/tools/max_projections_stack_and_upload_omero/max_projections_stack_and_upload_omero.xml
index 0037b8f..af685d9 100644
--- a/tools/max_projections_stack_and_upload_omero/max_projections_stack_and_upload_omero.xml
+++ b/tools/max_projections_stack_and_upload_omero/max_projections_stack_and_upload_omero.xml
@@ -1,7 +1,7 @@
 <tool id="max_projections_stack_and_upload_omero" name="Stack MaxProj" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.01" license="BSD-3">
     <description>And upload to omero</description>
     <macros>
-        <token name="@TOOL_VERSION@">20241213</token>
+        <token name="@TOOL_VERSION@">20241213.1</token>
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <requirements>
diff --git a/tools/max_projections_stack_and_upload_omero/stack_max_projs.groovy b/tools/max_projections_stack_and_upload_omero/stack_max_projs.groovy
index d1a026f..703ae5b 100644
--- a/tools/max_projections_stack_and_upload_omero/stack_max_projs.groovy
+++ b/tools/max_projections_stack_and_upload_omero/stack_max_projs.groovy
@@ -29,7 +29,7 @@
  */
 
 // Version number = date of last modif
-VERSION = "20241213"
+VERSION = "20241213.1"
 
 /**
  * *****************************************************************************************************************
@@ -140,7 +140,7 @@ try {
 			ImagePlus merged_imps = Concatenator.run(current_images as ImagePlus[])
 			// Re-order to make a multi-channel, time-lapse image
 			ImagePlus final_imp
-			if (channels.size() == 1 && nT == 1) {
+			if (channels.size() == 1 && ref_nT == 1) {
 				final_imp = merged_imps
 			} else {
 				try {