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14-HMM.Rmd
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14-HMM.Rmd
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# Hidden Markov Model {#hmm}
## Markov Chain
<iframe width="560" height="315" src="https://www.youtube.com/embed/x6XwAqt_AsQ" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Hidden Markov Model
<iframe width="560" height="315" src="https://www.youtube.com/embed/VBs8FYsZIN4" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Hidden Markov Model Forward Procedure
<iframe width="560" height="315" src="https://www.youtube.com/embed/c6OrSKsH_gg" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Hidden Markov Model Backward Procedure
<iframe width="560" height="315" src="https://www.youtube.com/embed/3FlVNdck3NU" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## HMM Forward-Backward Algorithm
<iframe width="560" height="315" src="https://www.youtube.com/embed/0N--Mtik358" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Viterbi Algorithm
<iframe width="560" height="315" src="https://www.youtube.com/embed/9CGijzXDxiw" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Baum Welch Algorithm Intuition
<iframe width="560" height="315" src="https://www.youtube.com/embed/NeC1ZC0Nwvw" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## HMM Bioinformatics Applications
<iframe width="560" height="315" src="https://www.youtube.com/embed/0dOFZoSaPbE" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>