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05-cluster.Rmd
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05-cluster.Rmd
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# Clustering {#cluster}
## Heatmap and clustering quality
<iframe width="560" height="315" src="https://www.youtube.com/embed/ISWtDR1vaHU" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Hierarchical cluster
<iframe width="560" height="315" src="https://www.youtube.com/embed/ISWtDR1vaHU?start=701" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## K means cluster
<iframe width="560" height="315" src="https://www.youtube.com/embed/XLWiUVO1ZYc" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Pick K and consensus clustering
<iframe width="560" height="315" src="https://www.youtube.com/embed/tAsvROMR8D8" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Batch effect removal
<iframe width="560" height="315" src="https://www.youtube.com/embed/xXAA_CcQMek" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
## Lab3
### PCA tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/myZRA5GrI2c" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
### Clustering tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/V9MFdy1cmMc" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
### Combat tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/2PlazNT7T4s" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
### DESeq2 Tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/c-V3CjoHGmU" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>
### DAVID/GSEA Tutorial
<iframe width="560" height="315" src="https://www.youtube.com/embed/y_3NSKNvKys" frameborder="0" allow="accelerometer; autoplay; clipboard-write; encrypted-media; gyroscope; picture-in-picture" allowfullscreen></iframe>