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phylo.heatmap error #86

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SolayMane opened this issue Mar 24, 2021 · 0 comments
Open

phylo.heatmap error #86

SolayMane opened this issue Mar 24, 2021 · 0 comments

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@SolayMane
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Hi , I have this error using phylo.heatmap:

table <-read.table("orthogroups_0_1.txt", sep ="\t", header =T, row.names=1)
fix(table)
mt <- t(table)
tree<-read.tree("SpeciesTree_rooted.txt")
phylo.heatmap(tree,mt)
Error in X[cw$tip.label, ] : indice hors limites

rownames(mat)
[1] "FoC125" "FoCA23" "FoCFus2" "race2_54008" "X160527"
[6] "TR4" "race1" "race4" "TR4_54006" "X4287"
[11] "MN25" "X26406" "N139" "HDV247" "Forc016"
[16] "X26381" "X54005" "X25433" "Foa44"
tree$tip.label
[1] "race4" "TR4" "TR4_54006" "race1" "25433"
[6] "54005" "HDV247" "race2_54008" "160527" "Foa44"
[11] "Forc016" "N139" "FoCFus2" "FoC125" "FoCA23"
[16] "26381" "MN25" "4287" "26406"
Can you help in resovling this issue,
Thank you.

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