From ec1897489a48f169df9f2ca0ed613c669ec189f0 Mon Sep 17 00:00:00 2001
From: Krzysztof Dyba <35004826+kadyb@users.noreply.github.com>
Date: Thu, 7 Nov 2024 00:08:45 +0100
Subject: [PATCH] restore previous test-coverage.yml

---
 .github/workflows/test-coverage.yml | 72 +++++++++++------------------
 1 file changed, 28 insertions(+), 44 deletions(-)

diff --git a/.github/workflows/test-coverage.yml b/.github/workflows/test-coverage.yml
index 09cb2a1..a61ce2d 100644
--- a/.github/workflows/test-coverage.yml
+++ b/.github/workflows/test-coverage.yml
@@ -1,68 +1,52 @@
+# source: https://github.com/r-lib/actions/blob/master/examples/test-coverage.yaml
+
 # test coverage is skipped for these functions:
 # geonames_download, geodb_download, borders_download (too large file size)
 # DEM_request, ortho_request (requests from GitHub are blocked)
 
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+name: test-coverage
+
 on:
   push:
-    branches: [main, master]
+    branches: [ master ]
   pull_request:
-    branches: [main, master]
-
-name: test-coverage
-
-permissions: read-all
+    branches: [ master ]
 
 jobs:
   test-coverage:
-    runs-on: ubuntu-latest
+    runs-on: macOS-latest
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
     steps:
       - uses: actions/checkout@v4
-
       - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
+      - uses: r-lib/actions/setup-pandoc@v2
 
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::covr, any::xml2
-          needs: coverage
 
-      - name: Test coverage
+      - name: Query dependencies
         run: |
-          skip_fun = c("geonames_download", "geodb_download", "borders_download",
-                       "DEM_request", "ortho_request", "orto_request")
-          cov <- covr::package_coverage(
-            function_exclusions = skip_fun,
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
-          )
-          covr::to_cobertura(cov)
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
         shell: Rscript {0}
 
-      - uses: codecov/codecov-action@v4
+      - name: Cache R packages
+        uses: actions/cache@v4
         with:
-          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
-          file: ./cobertura.xml
-          plugin: noop
-          disable_search: true
-          token: ${{ secrets.CODECOV_TOKEN }}
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
-      - name: Show testthat output
-        if: always()
+      - name: Install dependencies
         run: |
-          ## --------------------------------------------------------------------
-          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
+          options("pkgType" = "binary")
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("covr")
+        shell: Rscript {0}
 
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v4
-        with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package
+      - name: Test coverage
+        run: |
+          skip_fun = c("geonames_download", "geodb_download", "borders_download",
+                       "DEM_request", "ortho_request", "orto_request")
+          covr::codecov(function_exclusions = skip_fun)
+        shell: Rscript {0}