poly A will not open Bam file

[jayradke]

Running poly A gives the following...

[E::hts_hopen] Failed to open file /media/radkelab/01DA1EE339118570/NAGATA/Ad14/primary.bam.bai
[E::hts_open_format] Failed to open file "/media/radkelab/01DA1EE339118570/NAGATA/Ad14/primary.bam.bai" : Exec format error
nanopolish: src/common/nanopolish_bam_processor.cpp:29: BamProcessor::BamProcessor(const string&, const string&, int, int): Assertion `m_bam_fh != NULL' failed.
Aborted (core dumped)

We performed Nanopolish index followed by minimap2 the samtools view, sort and index.

Any suggestion on what we are doing wrong?

[jts]

Sorry for not answering this before. It looks like you passed in the .bai file as the bam argument?