Analysis of single cell RNA-seq data from innate lympoid cells.
All code required to reproduce the main figures of the paper “The heterogeneity of human CD127+ innate lymphoid cells revealed by single-cell RNA sequencing” Björklund, Forkel et al.
The first part of the code relates to transcriptome analysis and is included in ILC_scRNA_analysis.md and data files are located in folder data.
The second part is protein flow cytometry analysis of ILC3 cells, written by Jakob Theorell. For that analysis the script ILC3_Flow_Cytometry_tSNE.r and data files in data/FACS_raw_protein_data_ILC.zip are needed.