From 99db440dcd3d716cc0eac8552a2f415ac354aeb6 Mon Sep 17 00:00:00 2001 From: "Josh L. Espinoza" Date: Sat, 9 Jan 2021 13:23:50 -0800 Subject: [PATCH] acknowledgments --- README.md | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/README.md b/README.md index f306719..c96c810 100644 --- a/README.md +++ b/README.md @@ -77,6 +77,9 @@ pip install git+https://github.com/jolespin/compositional #### Citations (Debut): * Espinoza JL., Shah N, Singh S, Nelson KE., Dupont CL. Applications of weighted association networks applied to compositional data in biology. https://doi.org/10.1111/1462-2920.15091 + + + _________________________ ### Usage: @@ -161,3 +164,6 @@ X_ilr_with_tree = coda.transform_ilr(X, tree) #### Notes: * Versions prior to v2020.12.16 used `ddof=0` for all variance except during the `vlr` calculation. This was because `pandas._libs.algos.nancorr` uses `ddof=1` and not `ddof=0`. This caused specific `rho` values not to be bound by [-1,1]. To retain the performance of `nancorr`, I've set all `ddof=1` to match `nancorr`. + +#### Acknowledgements: + * Thank you to [Thomas Quinn](https://scholar.google.com/citations?user=h4nh0VoAAAAJ&hl=en&oi=sra) and your [insightful explanations](https://github.com/tpq/propr/issues/11) of compositional data analysis \ No newline at end of file