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Is it possible to create a new *.kraken and *.kraken.report besides extract specific reads #64

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B-1991-ing opened this issue Feb 7, 2023 · 0 comments
Open

Is it possible to create a new *.kraken and *.kraken.report besides extract specific reads #64

B-1991-ing opened this issue Feb 7, 2023 · 0 comments

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@B-1991-ing
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Hi Jennifer,

Is it possible to add another feature that extract_kraken_reads.py can not only be used to extract the bacterial and archeal reads from the classified sequences but also create **a new .kraken and .kraken.report only contains the bacterial and archeal taxonomy ids (t 2 and 2157)? Then the new created *.kraken can be used to transferred as a *.braken file.

Best,

Bing
@B-1991-ing B-1991-ing changed the title Is it possible to create a new kraken report besides extract specific reads Is it possible to create a new *.kraken and *.kraken.report besides extract specific reads Feb 7, 2023
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