statistics within and across groups

[marshelma]

Hi I'm trying to generate a plot contain statistic comparison between groups and within groups, the code I used are:

df %>%
tidyplot(x = Genotype, y = Quantified_value, color = Treatment) %>%
add_mean_bar(alpha = 0.4) %>%
add_sem_errorbar() %>%
add_data_points_beeswarm(size = 0.5) %>%
reorder_x_axis_labels(c("WT","HET","KO"))%>%
adjust_y_axis_title("pg/mL") %>%
add_test_pvalue(hide.ns = F)

However, I can only get comparison across one variable (Treatment), but not the other (Genotype), is there a way to perform comparison on both of these two variables?

[jbengler]

Hi @marshelma

Thank you for using tidyplots!

At the moment there is no way to have both comparisons in one plot.

add_test_pvalue() always compares the groups defined by the variable that is mapped to color. To compare the genotypes, you would have to do color = Genotype.

Best
Jan

[marshelma]

Hi @marshelma

Thank you for using tidyplots!

At the moment there is no way to have both comparisons in one plot.

add_test_pvalue() always compares the groups defined by the variable that is mapped to color. To compare the genotypes, you would have to do color = Genotype.

Best Jan

Thank you! I was hoping if there is a way I can show both type of comparisons in the same plot.