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himc_dockers

Docker builds for all tools used by HIMC. Base build contains R version 4.2.1, Seurat and Seurat Disk

To use on Minerva

ml singularity

singularity pull docker://dsouzd04/himc_seurat

singularity shell himc_seurat.sif # go inside container

singularity exec R -e 'library(Seurat)' # run command

Tools

Seurat v4.2.1

Docker

Homepage

SPOTlight Bioconductor v1.0.0

Docker

Homepage

RCTD from spacexr v2.0.3

Docker

Homepage

CARD v1.0.0

Docker

Homepage

Giotto v1.1.2

Docker

Homepage