perf_stat.txt

PFAM PF00532 family (12747 sequences) task all methods 
1x cpu 532m
4x cpu 384m 
8x cpu 297m

orig 380m ?

PFAM task SMERFS only 
1x 239m  
4x 29m 25s 

SMERFS speed up coefficient
1x ration 1
2x ration 0.9 per cpu
4x ratio for SMERFS 0.79 per cpu
6x ratio 0.6 per cpu
8x ration 0.55 per cpu

SMERFS actual exec time for 1000x3000 (len) 
8x 2m 30s 
sequential 12m 21s 
about 5x faster 

statp3.out>
Using 4 CPUs
Start time: 2010/08/30 00:39:24
Alignment loaded in: 5576 ms
Alignment has: 12747 sequences.
SCHNEIDER 29 ms
KABAT 0 ms
SHENKIN 9 ms
JORES 16 ms
GERSTEIN 791 ms
ARMON 29 ms
ZVELIBIL 70 ms
TAYLOR_GAPS 15 ms
TAYLOR_NO_GAPS 10 ms
THOMPSON 12345 ms
MIRNY 49 ms
WILLIAMSON 21 ms
NOT_LANCET 55 ms
KARLIN 961290 ms
LANDGRAF 19531542 ms
SANDER 1916377 ms
VALDAR 336809 ms
SMERFS 283865 ms
Total calculation time: 23049 s
End time: 2010/08/30 07:03:28


No methods are request assuming all are required.
Using 8 CPUs
Start time: 2010/08/31 00:46:50
Alignment loaded in: 4453 ms
Alignment has: 12747 sequences.
SCHNEIDER 33 ms
SHENKIN 42 ms
ARMON 28 ms
ZVELIBIL 101 ms
TAYLOR_GAPS 119 ms
TAYLOR_NO_GAPS 129 ms
JORES 142 ms
MIRNY 46 ms
KABAT 184 ms
NOT_LANCET 373 ms
GERSTEIN 1177 ms
WILLIAMSON 2564 ms
THOMPSON 13550 ms

KARLIN 982226 ms
SMERFS 1293295 ms
SANDER 1781526 ms
VALDAR 2189384 ms
LANDGRAF 16525717 ms

Total calculation time: 17824 s
End time: 2010/08/31 05:43:50