From 5a4a4224be7b8d8e70b9907ccc64d5416e60d9f0 Mon Sep 17 00:00:00 2001 From: Elizabeth Partan <36081569+epartan@users.noreply.github.com> Date: Fri, 7 Jun 2024 11:41:16 -0400 Subject: [PATCH] Update 13_oncoprint_creation.md typos --- lessons/13_oncoprint_creation.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/lessons/13_oncoprint_creation.md b/lessons/13_oncoprint_creation.md index 9562072..c24d977 100644 --- a/lessons/13_oncoprint_creation.md +++ b/lessons/13_oncoprint_creation.md @@ -44,7 +44,7 @@ The first step when using the Oncoprinter is to format the data into the form th In our code below we are just going to focus on missense, frameshift, stop codon gain and inframe mutations. However, for your data, you could be interested in other types of mutational events, so please modify the code as needed. Let's start this process by moving into our scripts directory and creating a bash script to wrangle our VCF file into the format required by Oncoprinter: -> Note: There is a great resource from the Human Genome Variation Society describing much of the nomenclature used to describe varaints [here](https://www.hgvs.org/mutnomen/recs-prot.html). +> Note: There is a great resource from the Human Genome Variation Society describing much of the nomenclature used to describe variants [here](https://www.hgvs.org/mutnomen/recs-prot.html). ``` cd ~/variant_calling/scripts/