diff --git a/README.md b/README.md index dea0beb..4a0c79c 100644 --- a/README.md +++ b/README.md @@ -5,20 +5,23 @@ Mathematica Import for HEYEX Raw Data This is a *Mathematica* package to access HEYEX Raw files which can e.g. created from Optical Coherence Tomography scans of [*Heidelberg Spectralis* products](http://www.heidelbergengineering.com/us/products/spectralis-models/). -The package incorporates its functionality directly into the `Import`-framework of *Mathematica*. Therefore, Heyex Raw files can be loaded by calling `Import` as specified in the [Usage section](#Usage). +The package incorporates its functionality directly into the [`Import`-framework of *Mathematica*](http://reference.wolfram.com/language/ref/Import.html). Therefore, Heyex Raw files can be loaded by calling `Import` as specified in the [Usage section](#Usage). Various information of the Heyex files can be accessed: - The file header which contains meta data like patient ID's, scan sizes, etc. - The scanned volume data as a numerical array -- The scanned volume as `Image3D` -- Slices or the whole volume as a list of `Image`s -- The *scanning laser ophthalmoscopy* (SLO) image -- The segmentation data for different retina layers (ILM, RPE) when provided in the HEYEX Raw file +- The scanned volume as [`Image3D`](http://reference.wolfram.com/language/ref/Image3D.html) +- Slices or the whole volume as a list of [`Images`](http://reference.wolfram.com/language/ref/Image.html) +- The [*scanning laser ophthalmoscopy* (SLO)](http://en.wikipedia.org/wiki/Scanning_laser_ophthalmoscopy) image +- The segmentation data for different retina layers ([ILM][ilm], [RPE](rpe)) when provided in the HEYEX Raw file + +[ilm]: http://en.wikipedia.org/wiki/Inner_limiting_membrane +[rpe]: http://en.wikipedia.org/wiki/Retinal_pigment_epithelium ##![Install Icon](http://i.imgur.com/ayLRwo3.png) Installation -Download or clone the repository and copy the *inner* `HeyexImport` directoy with all content: +[Download](https://github.com/halirutan/HeyexImport/archive/master.zip) or clone the repository and copy the *inner* `HeyexImport` directoy with all content: HeyexImport ├── HeyexImport.m @@ -33,8 +36,7 @@ After that, you should be able to load the package with <