From e4a753b02188eed6db997b2983489bce3d562f33 Mon Sep 17 00:00:00 2001 From: yuragal Date: Mon, 26 Dec 2016 18:44:56 +0800 Subject: [PATCH] Update prepare_trinity_genome_assembly_pbs.pl Otherwise default $intron_max_size overwrites the input script argument. --- bin/prepare_trinity_genome_assembly_pbs.pl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/bin/prepare_trinity_genome_assembly_pbs.pl b/bin/prepare_trinity_genome_assembly_pbs.pl index be3e3698..60162483 100755 --- a/bin/prepare_trinity_genome_assembly_pbs.pl +++ b/bin/prepare_trinity_genome_assembly_pbs.pl @@ -74,7 +74,7 @@ =head1 USAGE 'medium_cutoff:i' => \$medium_cut, 'sam:s{,}' => \@user_provided_sam_files, 'bam|files_bam:s{,}' => \@user_provided_bam_files, - 'intron_max:i' => $intron_max_size, + 'intron_max:i' => \$intron_max_size, 'single_stranded:s' => \$is_single_stranded, 'single_end' => \$single_end, 'split_scaffolds' => \$do_split_scaffolds,