diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index c72f5a97..120644dc 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -25,6 +25,7 @@ tools: owner: bgruening revisions: - 09855551d713 + - 0fc0f9cf035a - 28433faa6e42 - bd0e53f3a891 - ca6d970d931c @@ -35,6 +36,7 @@ tools: revisions: - 6519ebe25019 - 7be22100e5e1 + - aada0deea587 - dc027fa56d55 - f1e653756174 tool_panel_section_id: annotation @@ -295,6 +297,7 @@ tools: - name: tetyper owner: iuc revisions: + - 2b21643ce8d7 - 36093854bfc7 - 8bc80c2a15b3 - edcf603bedfd diff --git a/usegalaxy.org/assembly.yml.lock b/usegalaxy.org/assembly.yml.lock index 0e574193..02d3ce95 100644 --- a/usegalaxy.org/assembly.yml.lock +++ b/usegalaxy.org/assembly.yml.lock @@ -499,5 +499,6 @@ tools: owner: iuc revisions: - 607d5e33c4c2 + - ab8373ba3830 tool_panel_section_id: assembly tool_panel_section_label: Assembly diff --git a/usegalaxy.org/convert_formats.yml.lock b/usegalaxy.org/convert_formats.yml.lock index 5e0f027a..fcdda402 100644 --- a/usegalaxy.org/convert_formats.yml.lock +++ b/usegalaxy.org/convert_formats.yml.lock @@ -277,6 +277,7 @@ tools: owner: iuc revisions: - 3c19c84fbce2 + - a40dd4fd3096 - d9965e143053 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats diff --git a/usegalaxy.org/data_managers.yml.lock b/usegalaxy.org/data_managers.yml.lock index d24a243c..d2186868 100644 --- a/usegalaxy.org/data_managers.yml.lock +++ b/usegalaxy.org/data_managers.yml.lock @@ -6,18 +6,21 @@ tools: - name: data_manager_fetch_genome_dbkeys_all_fasta owner: devteam revisions: + - 4a82d1157b14 - 4d3eff1bc421 tool_panel_section_id: data_managers tool_panel_section_label: Data Managers - name: data_manager_bowtie2_index_builder owner: devteam revisions: + - 39865c64a4e1 - 9dd107db92c2 tool_panel_section_id: data_managers tool_panel_section_label: Data Managers - name: data_manager_bwa_mem_index_builder owner: devteam revisions: + - 0a87b85d9911 - 9e993022c762 tool_panel_section_id: data_managers tool_panel_section_label: Data Managers @@ -44,6 +47,7 @@ tools: revisions: - a256278e5bff - ad90c2da4f38 + - defd3e9ddd2d tool_panel_section_id: data_managers tool_panel_section_label: Data Managers - name: data_manager_hisat2_index_builder @@ -55,6 +59,7 @@ tools: - name: data_manager_star_index_builder owner: iuc revisions: + - 71c994a11f71 - d63c1442407f tool_panel_section_id: data_managers tool_panel_section_label: Data Managers @@ -62,6 +67,7 @@ tools: owner: iuc revisions: - 39a922d01b0d + - 9c91b5015dd3 - cb157f55b4fd tool_panel_section_id: data_managers tool_panel_section_label: Data Managers @@ -104,6 +110,7 @@ tools: - 13851aefa67a - 1e34d2e3d285 - 539b008cfe1c + - 8c533e19b697 - 90b4d4f0a3a4 - e4b4837f06f5 - e9ee4d074d5d @@ -119,6 +126,7 @@ tools: - name: data_manager_mapseq owner: iuc revisions: + - 19ef193d1316 - 23511530b8fd - 4cd97cc67061 - dbf2735e8480 diff --git a/usegalaxy.org/evolution.yml.lock b/usegalaxy.org/evolution.yml.lock index 719cc4d9..847a781f 100644 --- a/usegalaxy.org/evolution.yml.lock +++ b/usegalaxy.org/evolution.yml.lock @@ -12,6 +12,7 @@ tools: - name: fasttree owner: iuc revisions: + - bc939965ce41 - c7e73acfa3eb - e005e659ae21 - ef46a404db96 diff --git a/usegalaxy.org/get_data.yml.lock b/usegalaxy.org/get_data.yml.lock index 96e49ecf..be792160 100644 --- a/usegalaxy.org/get_data.yml.lock +++ b/usegalaxy.org/get_data.yml.lock @@ -103,6 +103,7 @@ tools: - name: uniprotxml_downloader owner: galaxyp revisions: + - 4ddc8da62671 - a371252a2cf6 tool_panel_section_id: get_data tool_panel_section_label: Get Data diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock index 16c24ccf..65d8cf97 100644 --- a/usegalaxy.org/graph_display_data.yml.lock +++ b/usegalaxy.org/graph_display_data.yml.lock @@ -315,6 +315,7 @@ tools: - 2f557f6abbfb - 73b8cb5bddcd - 83c573f2e73c + - 99ace6c1ff57 - a363ba287b88 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -329,6 +330,7 @@ tools: revisions: - 0e592dcaeb7f - 137e08517410 + - 21bb464c1d53 - 2fff478aca4b - 49f3d3878413 - 4aec47f872b3 diff --git a/usegalaxy.org/hicexplorer.yml.lock b/usegalaxy.org/hicexplorer.yml.lock index 5c2c046e..8939457f 100644 --- a/usegalaxy.org/hicexplorer.yml.lock +++ b/usegalaxy.org/hicexplorer.yml.lock @@ -8,12 +8,14 @@ tools: revisions: - 01c37e54e86e - 952abbc4b1de + - c3ffb2c1e314 - fb7068d30ec9 tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_chicdifferentialtest owner: bgruening revisions: + - 45828071edc3 - 57aeaf6b237d - 9d42a6133690 - f1c35f3f310d @@ -23,6 +25,7 @@ tools: owner: bgruening revisions: - 163fd744e235 + - 1a31e75e979e - 23b8d6b8960c - cab616fe7e64 tool_panel_section_id: hicexplorer @@ -31,6 +34,7 @@ tools: owner: bgruening revisions: - 013e53ccc7ac + - '920526260066' - b9ab56aecd18 - f47ac4a0b337 tool_panel_section_id: hicexplorer @@ -41,6 +45,7 @@ tools: - 9ea228a9afc8 - a63e9713c39d - b892fa1fcaec + - f6a169b5e43b tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_chicsignificantinteractions @@ -49,11 +54,13 @@ tools: - 45a386d18509 - 640e0e45518a - f8320df1866b + - ff1af7bac1cb tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_chicviewpoint owner: bgruening revisions: + - 37125838e360 - 40fee49bc6c3 - c4ed35f4f77f - f881c94fb3b3 @@ -65,6 +72,7 @@ tools: - 9ea228a9afc8 - a63e9713c39d - b892fa1fcaec + - f6a169b5e43b tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_chicsignificantinteractions @@ -73,11 +81,13 @@ tools: - 45a386d18509 - 640e0e45518a - f8320df1866b + - ff1af7bac1cb tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_chicviewpoint owner: bgruening revisions: + - 37125838e360 - 40fee49bc6c3 - c4ed35f4f77f - f881c94fb3b3 @@ -86,6 +96,7 @@ tools: - name: hicexplorer_chicviewpointbackgroundmodel owner: bgruening revisions: + - 6f8debcf2ac9 - 9d02f1819e81 - c354255ff705 - f963c251ac77 @@ -97,11 +108,13 @@ tools: - 2dccb6bb0add - 782bdcb775fb - e06265d204f6 + - e8760fc0e29b tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_hicaggregatecontacts owner: bgruening revisions: + - 30677e95bc89 - 63c8377c58b3 - b05f662f9f35 - f0216498a666 @@ -110,6 +123,7 @@ tools: - name: hicexplorer_hicaverageregions owner: bgruening revisions: + - 3240e8a7c54f - 8a11d70b6cd8 - c72fa6cb8817 - fe3aa71590d5 @@ -120,6 +134,7 @@ tools: revisions: - 0f611e7d7858 - 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bf9379529c3e - ffc33339cd3e tool_panel_section_id: hicexplorer @@ -175,6 +196,7 @@ tools: owner: bgruening revisions: - 07dd436ea686 + - 4977f65da0ff - 5dfba24d7bdd - 77d8e0fd162a tool_panel_section_id: hicexplorer @@ -184,6 +206,7 @@ tools: revisions: - 6c5097f6d41e - 972dcccb5bbc + - f0b1bd38745a - f1b3902f8baf tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer @@ -191,6 +214,7 @@ tools: owner: bgruening revisions: - 11de0d28ab30 + - 478aacfbaa37 - 755df866ad0c - ec4b948dc6f0 tool_panel_section_id: hicexplorer @@ -198,6 +222,7 @@ tools: - name: hicexplorer_hichyperoptdetectloops owner: bgruening revisions: + - 3e5c86c2f80d - 409396ea5cf0 - 7f7c6ead2d0d - bb8849fca57c @@ -207,6 +232,7 @@ tools: owner: bgruening revisions: - 51e40e9b6c3c + - 7fbd6feba1ca - b0f33533181d - e4f8fceab96a tool_panel_section_id: hicexplorer @@ -216,6 +242,7 @@ tools: revisions: - 32173084d53f - 55b013e59018 + - 908fa330b93b - c261b6b05ee3 tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer @@ -225,12 +252,14 @@ tools: - 4b194e675916 - b376ef118807 - b6b8c8672756 + - febfddb0b3e8 tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_hicmergeloops owner: bgruening revisions: - 1511a8ebe906 + - 1d9799f4b854 - 910c6a1c3a27 - ed900cd4a0a9 tool_panel_section_id: hicexplorer @@ -240,6 +269,7 @@ tools: revisions: - 11fa44ee0603 - 977dc15add20 + - 9d93c8fbe0a6 - f72063d9426b tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer @@ -247,6 +277,7 @@ tools: owner: bgruening revisions: - 2aa5b6b65197 + - 5e83c077e31d - 6d042c96aceb - f34ab9882252 tool_panel_section_id: hicexplorer @@ -257,11 +288,13 @@ tools: - 1da5f169b491 - 77919cc3618e - c3e5e2cf12b7 + - f86ca478c6af tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_hicplotaverageregions owner: bgruening revisions: + - 3f1b286a5c34 - 9b383d429659 - dd9988943f53 - ea5d67ec94ab @@ -273,11 +306,13 @@ tools: - 06ced663d24f - 11f39d7f6c64 - 6326cd29c1c3 + - 89cfe7de541b tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: hicexplorer_hicplotmatrix owner: bgruening revisions: + - 025a128652dc - 12d51d7be66f - b63363075c2e - f741330d4a71 @@ -286,6 +321,7 @@ tools: - name: hicexplorer_hicplotsvl owner: bgruening revisions: + - 1602cc5b673c - 337705015ee8 - b4e780e93c91 - beb5b5917d2f @@ -296,6 +332,7 @@ tools: revisions: - 58de3c7c8e89 - 8d203e74869b + - a10fce08c2dc - e285920f8585 tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer @@ -304,6 +341,7 @@ tools: revisions: - 21d859ad4502 - 5cbd7a902a8d + - b13e7a200525 - ea8fb5e899e8 tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer @@ -312,6 +350,7 @@ tools: revisions: - 1d6af10874d5 - 36dfa2825a59 + - d74cf4a61d65 - f81750434d70 tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer @@ -332,6 +371,7 @@ tools: revisions: - 1de2276f633f - 27fe5cd1729c + - df64cc4dfb4d - f36828ebdc54 tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer @@ -341,6 +381,7 @@ tools: - 11a3385e03b5 - 1d201e8378b3 - cef9fb4ece1c + - d890828ab02a tool_panel_section_id: hicexplorer tool_panel_section_label: HiCExplorer - name: schicexplorer_schicadjustmatrix diff --git a/usegalaxy.org/mapping.yml.lock b/usegalaxy.org/mapping.yml.lock index 79e0cc79..4d8938e4 100644 --- a/usegalaxy.org/mapping.yml.lock +++ b/usegalaxy.org/mapping.yml.lock @@ -115,6 +115,7 @@ tools: revisions: - 13022c3d3076 - 178bdbdb6d24 + - 381a32c51141 - 42ce70172b72 - 45795f582ae9 - 5ef7ec16b04f diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock index bf822f9c..e5ab81b4 100644 --- a/usegalaxy.org/metagenomic_analysis.yml.lock +++ b/usegalaxy.org/metagenomic_analysis.yml.lock @@ -222,6 +222,7 @@ tools: owner: iuc revisions: - 1c9715cef808 + - 3a89c3f99f3d - 4d89978c6188 - 5b5a7af9fbb4 - 63f86089423e @@ -236,6 +237,7 @@ tools: revisions: - 04144473e59e - 073608a50ac3 + - 1770d188f72d - 1bc3657cd694 - 5b752525bd6f - 7136e9ab70db @@ -437,6 +439,7 @@ tools: owner: nml revisions: - 2fd4d4c9c5c2 + - 3548a93b39c1 - 3b22de20bd4b - da787fc8b740 tool_panel_section_id: metagenomic_analysis @@ -612,24 +615,28 @@ tools: - name: phyloseq_from_dada2 owner: iuc revisions: + - 40ebae5bbe51 - 87064cb77a52 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: phyloseq_from_biom owner: iuc revisions: + - 1feea247d08a - c0101c72b8af tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: phyloseq_plot_ordination owner: iuc revisions: + - c35e0075c7a2 - dfe800a3faaf tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: phyloseq_plot_richness owner: iuc revisions: + - 1a6c2cc92c6e - fb7c4bbe8994 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis diff --git a/usegalaxy.org/nanopore.yml.lock b/usegalaxy.org/nanopore.yml.lock index b1fc9ffa..fa20d930 100644 --- a/usegalaxy.org/nanopore.yml.lock +++ b/usegalaxy.org/nanopore.yml.lock @@ -197,6 +197,7 @@ tools: - 3ee0ef312022 - 8d4f03b5fe9d - cb8dfd28c16f + - cd11366d92cf - de24438c9988 - e27815e82dd4 tool_panel_section_id: nanopore diff --git a/usegalaxy.org/proteomics.yml.lock b/usegalaxy.org/proteomics.yml.lock index bc12bfe2..c0a4f604 100644 --- a/usegalaxy.org/proteomics.yml.lock +++ b/usegalaxy.org/proteomics.yml.lock @@ -147,6 +147,7 @@ tools: owner: galaxyp revisions: - da9ebef968bd + - e969a182e3cb - ef46866326ef tool_panel_section_id: proteomics tool_panel_section_label: Proteomics diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock index a6b34fed..46a893cc 100644 --- a/usegalaxy.org/rna_seq.yml.lock +++ b/usegalaxy.org/rna_seq.yml.lock @@ -151,6 +151,7 @@ tools: - 4014de1b6daf - 4074fc1940e2 - 44959aa06aeb + - 53255f6eecfc - 5ec75f5dae3c - 79de45b5069b - 7ed2edc1337f diff --git a/usegalaxy.org/single_cell.yml.lock b/usegalaxy.org/single_cell.yml.lock index d5511ccc..64ebef33 100644 --- a/usegalaxy.org/single_cell.yml.lock +++ b/usegalaxy.org/single_cell.yml.lock @@ -642,6 +642,7 @@ tools: - name: decoupler_pseudobulk owner: ebi-gxa revisions: + - 09c833d9b03b - ef054892d47f tool_panel_section_id: single_cell tool_panel_section_label: Single-cell diff --git a/usegalaxy.org/text_manipulation.yml.lock b/usegalaxy.org/text_manipulation.yml.lock index 2d9f8859..89993ad9 100644 --- a/usegalaxy.org/text_manipulation.yml.lock +++ b/usegalaxy.org/text_manipulation.yml.lock @@ -191,6 +191,7 @@ tools: - name: diff owner: bgruening revisions: + - 10ef1bf99074 - 156d0908e232 tool_panel_section_id: text_manipulation tool_panel_section_label: Text Manipulation diff --git a/usegalaxy.org/variant_calling.yml.lock b/usegalaxy.org/variant_calling.yml.lock index 1f235bd5..8fefad8d 100644 --- a/usegalaxy.org/variant_calling.yml.lock +++ b/usegalaxy.org/variant_calling.yml.lock @@ -294,6 +294,7 @@ tools: revisions: - 3c19c84fbce2 - 78df8fc2b3ab + - a40dd4fd3096 - d9965e143053 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling