From c0093fbbb0156915db0f428d9a78df465c011c1c Mon Sep 17 00:00:00 2001 From: Saskia Hiltemann Date: Thu, 8 Aug 2024 10:43:14 +0000 Subject: [PATCH 1/3] add new recording from Google Form submission --- .../tutorials/diversity/tutorial.md | 26 ++++++++++++++----- 1 file changed, 20 insertions(+), 6 deletions(-) diff --git a/topics/microbiome/tutorials/diversity/tutorial.md b/topics/microbiome/tutorials/diversity/tutorial.md index 8d73be9d4aa088..cb3faad9154245 100644 --- a/topics/microbiome/tutorials/diversity/tutorial.md +++ b/topics/microbiome/tutorials/diversity/tutorial.md @@ -4,12 +4,13 @@ draft: false title: Calculating α and β diversity from microbiome taxonomic data zenodo_link: https://zenodo.org/records/13150694 questions: -- How many different taxons are present in my sample? How do I additionally take their relative abundance into account? +- How many different taxons are present in my sample? How do I additionally take their + relative abundance into account? - How similar or how dissimilar are my samples in term of taxonomic diversity? - What are the different metrics used to calculate the taxonomic diversity of my samples? objectives: - Explain what taxonomic diversity is -- Explain different metrics to calculate α and β diversity +- Explain different metrics to calculate α and β diversity - Apply Krakentools to calculate α and β diversity and understand the output level: Introductory key_points: @@ -18,15 +19,28 @@ key_points: time_estimation: 20M subtopic: metagenomics contributions: - authorship: - - sophia120199 - - bebatut - - paulzierep + authorship: + - sophia120199 + - bebatut + - paulzierep tags: - metagenomics - diversity +recordings: +- youtube_id: TODO + length: 23M + galaxy_version: " 24.1.2.dev0" + date: '2024-08-08' + speakers: + - paulzierep + captioners: + - paulzierep + bot-timestamp: 1723117037 + + --- + # Introduction A **diversity index** is a quantitative measure that is used to assess the level of diversity or variety within a particular system, such as a biological community, a population, or a workplace. It provides a way to capture and quantify the distribution of different types or categories within a system. From 7f3e9d09feab6618c4d360caf49553626854e4fa Mon Sep 17 00:00:00 2001 From: Saskia Hiltemann Date: Thu, 8 Aug 2024 12:58:39 +0200 Subject: [PATCH 2/3] Update topics/microbiome/tutorials/diversity/tutorial.md --- topics/microbiome/tutorials/diversity/tutorial.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/microbiome/tutorials/diversity/tutorial.md b/topics/microbiome/tutorials/diversity/tutorial.md index cb3faad9154245..3b36cd35581924 100644 --- a/topics/microbiome/tutorials/diversity/tutorial.md +++ b/topics/microbiome/tutorials/diversity/tutorial.md @@ -29,7 +29,7 @@ tags: recordings: - youtube_id: TODO length: 23M - galaxy_version: " 24.1.2.dev0" + galaxy_version: 24.1.2.dev0 date: '2024-08-08' speakers: - paulzierep From 09068f4b2b095218c8a3d65161ab197701384134 Mon Sep 17 00:00:00 2001 From: teresa-m Date: Thu, 8 Aug 2024 14:08:32 +0200 Subject: [PATCH 3/3] Update topics/microbiome/tutorials/diversity/tutorial.md --- topics/microbiome/tutorials/diversity/tutorial.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/topics/microbiome/tutorials/diversity/tutorial.md b/topics/microbiome/tutorials/diversity/tutorial.md index 3b36cd35581924..df171e512cd74c 100644 --- a/topics/microbiome/tutorials/diversity/tutorial.md +++ b/topics/microbiome/tutorials/diversity/tutorial.md @@ -27,7 +27,7 @@ tags: - metagenomics - diversity recordings: -- youtube_id: TODO +- youtube_id: e4vlvMsBrhM length: 23M galaxy_version: 24.1.2.dev0 date: '2024-08-08'