From 50c5a804fd3549deaf470bfec4cdb7b03ec1e597 Mon Sep 17 00:00:00 2001
From: planemo-autoupdate <planemo-autoupdate@users.noreply.github.com>
Date: Mon, 23 Dec 2024 04:40:52 +0000
Subject: [PATCH] Updating tools/pathview from version 1.34.0 to 1.42.0

---
 tools/pathview/pathview.xml | 40 ++++++++++++++++++-------------------
 1 file changed, 20 insertions(+), 20 deletions(-)

diff --git a/tools/pathview/pathview.xml b/tools/pathview/pathview.xml
index 500cac8c08d..b9d1a5501e3 100644
--- a/tools/pathview/pathview.xml
+++ b/tools/pathview/pathview.xml
@@ -5,31 +5,31 @@
         <xref type="bioconductor">pathview</xref>
     </xrefs>
     <macros>
-        <token name="@TOOL_VERSION@">1.34.0</token>
+        <token name="@TOOL_VERSION@">1.42.0</token>
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">bioconductor-pathview</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.ag.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.at.tair.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.bt.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.ce.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.cf.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.dm.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.dr.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.eck12.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.ecsakai.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.gg.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.hs.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.mm.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.mmu.eg.db</requirement>
+        <requirement type="package" version="3.20.0">bioconductor-org.ag.eg.db</requirement>
+        <requirement type="package" version="3.20.0">bioconductor-org.at.tair.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.bt.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.ce.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.cf.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.dm.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.dr.eg.db</requirement>
+        <requirement type="package" version="3.20.0">bioconductor-org.eck12.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.ecsakai.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.gg.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.hs.eg.db</requirement>
+        <requirement type="package" version="3.20.0">bioconductor-org.mm.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.mmu.eg.db</requirement>
         <requirement type="package" version="3.14.0">bioconductor-org.pf.plasmo.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.pt.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.rn.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.sc.sgd.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.ss.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.xl.eg.db</requirement>
-        <requirement type="package" version="1.7.1">r-optparse</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.pt.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.rn.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.sc.sgd.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.ss.eg.db</requirement>
+        <requirement type="package" version="3.18.0">bioconductor-org.xl.eg.db</requirement>
+        <requirement type="package" version="1.7.5">r-optparse</requirement>
     </requirements>
     <version_command><![CDATA[
 echo $(R --version | grep version | grep -v GNU)", pathview version" $(R --vanilla --slave -e "library(pathview); cat(sessionInfo()\$otherPkgs\$pathview\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", optparse version" $(R --vanilla --slave -e "library(optparse); cat(sessionInfo()\$otherPkgs\$optparse\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", dplyr version" $(R --vanilla --slave -e "library(dplyr); cat(sessionInfo()\$otherPkgs\$dplyr\$Version)" 2> /dev/null | grep -v -i "WARNING: ")", ggplot2 version" $(R --vanilla --slave -e "library(ggplot2); cat(sessionInfo()\$otherPkgs\$ggplot2\$Version)" 2> /dev/null | grep -v -i "WARNING: ")