diff --git a/tools/mothur/align.check.xml b/tools/mothur/align.check.xml
index f6e3d132e21..8ef3325b1ce 100644
--- a/tools/mothur/align.check.xml
+++ b/tools/mothur/align.check.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/align.seqs.xml b/tools/mothur/align.seqs.xml
index bf93b3b3b28..e61e5c1e3e7 100644
--- a/tools/mothur/align.seqs.xml
+++ b/tools/mothur/align.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/amova.xml b/tools/mothur/amova.xml
index 760998ea874..5f47f4ab8ae 100644
--- a/tools/mothur/amova.xml
+++ b/tools/mothur/amova.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/anosim.xml b/tools/mothur/anosim.xml
index 6afab7a610b..408671e1b6c 100644
--- a/tools/mothur/anosim.xml
+++ b/tools/mothur/anosim.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/bin.seqs.xml b/tools/mothur/bin.seqs.xml
index 09f2086b769..1d129e9814c 100644
--- a/tools/mothur/bin.seqs.xml
+++ b/tools/mothur/bin.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/biom.info.xml b/tools/mothur/biom.info.xml
index 667cf9d7244..2f5978abbc4 100644
--- a/tools/mothur/biom.info.xml
+++ b/tools/mothur/biom.info.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/chimera.bellerophon.xml b/tools/mothur/chimera.bellerophon.xml
index c9dec68caca..149d80a948e 100644
--- a/tools/mothur/chimera.bellerophon.xml
+++ b/tools/mothur/chimera.bellerophon.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/chimera.ccode.xml b/tools/mothur/chimera.ccode.xml
index 3931ee70418..114a564b1a4 100644
--- a/tools/mothur/chimera.ccode.xml
+++ b/tools/mothur/chimera.ccode.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/chimera.check.xml b/tools/mothur/chimera.check.xml
index fb63632cafd..0c3793e5e6a 100644
--- a/tools/mothur/chimera.check.xml
+++ b/tools/mothur/chimera.check.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/chimera.perseus.xml b/tools/mothur/chimera.perseus.xml
index 7230afc0075..ebe782f3dd8 100644
--- a/tools/mothur/chimera.perseus.xml
+++ b/tools/mothur/chimera.perseus.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/chimera.pintail.xml b/tools/mothur/chimera.pintail.xml
index 845a3c1b19e..6da10c87b08 100644
--- a/tools/mothur/chimera.pintail.xml
+++ b/tools/mothur/chimera.pintail.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/chimera.slayer.xml b/tools/mothur/chimera.slayer.xml
index a5567c11793..154622cb0cd 100644
--- a/tools/mothur/chimera.slayer.xml
+++ b/tools/mothur/chimera.slayer.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/chimera.uchime.xml b/tools/mothur/chimera.uchime.xml
index cf5f445ced0..519f8b06f9d 100644
--- a/tools/mothur/chimera.uchime.xml
+++ b/tools/mothur/chimera.uchime.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/chimera.vsearch.xml b/tools/mothur/chimera.vsearch.xml
index 729843999b9..71245151543 100644
--- a/tools/mothur/chimera.vsearch.xml
+++ b/tools/mothur/chimera.vsearch.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements">
         <requirement type="package" version="2.6.0">vsearch</requirement>
     </expand>
diff --git a/tools/mothur/chop.seqs.xml b/tools/mothur/chop.seqs.xml
index a15f003d4d0..39e0b4305b3 100644
--- a/tools/mothur/chop.seqs.xml
+++ b/tools/mothur/chop.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/classify.otu.xml b/tools/mothur/classify.otu.xml
index c0368026ddf..2e3172aab29 100644
--- a/tools/mothur/classify.otu.xml
+++ b/tools/mothur/classify.otu.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/classify.seqs.xml b/tools/mothur/classify.seqs.xml
index 6395aa67b83..83ef42b73ba 100644
--- a/tools/mothur/classify.seqs.xml
+++ b/tools/mothur/classify.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/classify.tree.xml b/tools/mothur/classify.tree.xml
index 9dd69d8257b..12dd5d67a52 100644
--- a/tools/mothur/classify.tree.xml
+++ b/tools/mothur/classify.tree.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/clearcut.xml b/tools/mothur/clearcut.xml
index 8fc50bf5955..1d052040cec 100644
--- a/tools/mothur/clearcut.xml
+++ b/tools/mothur/clearcut.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/cluster.classic.xml b/tools/mothur/cluster.classic.xml
index 9716e911e40..30382f50418 100644
--- a/tools/mothur/cluster.classic.xml
+++ b/tools/mothur/cluster.classic.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/cluster.fragments.xml b/tools/mothur/cluster.fragments.xml
index f7df095072c..3b4251b0de8 100644
--- a/tools/mothur/cluster.fragments.xml
+++ b/tools/mothur/cluster.fragments.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/cluster.split.xml b/tools/mothur/cluster.split.xml
index f0d7f02c45d..5297fff64b9 100644
--- a/tools/mothur/cluster.split.xml
+++ b/tools/mothur/cluster.split.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements">
         <requirement type="package" version="2.6.0">vsearch</requirement>
     </expand>
diff --git a/tools/mothur/cluster.xml b/tools/mothur/cluster.xml
index 4c6912d473e..f5a7641dcc4 100644
--- a/tools/mothur/cluster.xml
+++ b/tools/mothur/cluster.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements">
         <requirement type="package" version="2.6.0">vsearch</requirement>
     </expand>
diff --git a/tools/mothur/collect.shared.xml b/tools/mothur/collect.shared.xml
index 4bdebc610bd..862bbf139f4 100644
--- a/tools/mothur/collect.shared.xml
+++ b/tools/mothur/collect.shared.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/collect.single.xml b/tools/mothur/collect.single.xml
index 00e9fbbdd18..4e7fa25db0f 100644
--- a/tools/mothur/collect.single.xml
+++ b/tools/mothur/collect.single.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/consensus.seqs.xml b/tools/mothur/consensus.seqs.xml
index ad93d3110cf..ec2322a94fa 100644
--- a/tools/mothur/consensus.seqs.xml
+++ b/tools/mothur/consensus.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/cooccurrence.xml b/tools/mothur/cooccurrence.xml
index 5230a94f6ff..dc052bb321d 100644
--- a/tools/mothur/cooccurrence.xml
+++ b/tools/mothur/cooccurrence.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/corr.axes.xml b/tools/mothur/corr.axes.xml
index 69445826be4..2b509a7352a 100644
--- a/tools/mothur/corr.axes.xml
+++ b/tools/mothur/corr.axes.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/count.groups.xml b/tools/mothur/count.groups.xml
index 2a2159fb6d7..287280e1010 100644
--- a/tools/mothur/count.groups.xml
+++ b/tools/mothur/count.groups.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/count.seqs.xml b/tools/mothur/count.seqs.xml
index b500430e435..cbf503db7d5 100644
--- a/tools/mothur/count.seqs.xml
+++ b/tools/mothur/count.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/create.database.xml b/tools/mothur/create.database.xml
index 32b9769473f..fdfb3f00cf6 100644
--- a/tools/mothur/create.database.xml
+++ b/tools/mothur/create.database.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/degap.seqs.xml b/tools/mothur/degap.seqs.xml
index 2f146176813..9e124864ada 100644
--- a/tools/mothur/degap.seqs.xml
+++ b/tools/mothur/degap.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/deunique.seqs.xml b/tools/mothur/deunique.seqs.xml
index 715ed5b9726..7bbdf4398fd 100644
--- a/tools/mothur/deunique.seqs.xml
+++ b/tools/mothur/deunique.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/deunique.tree.xml b/tools/mothur/deunique.tree.xml
index e0766518eeb..17af833dce8 100644
--- a/tools/mothur/deunique.tree.xml
+++ b/tools/mothur/deunique.tree.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/dist.seqs.xml b/tools/mothur/dist.seqs.xml
index 57b5de7beb2..e6583a167b5 100644
--- a/tools/mothur/dist.seqs.xml
+++ b/tools/mothur/dist.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/dist.shared.xml b/tools/mothur/dist.shared.xml
index eda77278d07..31fe91b83d4 100644
--- a/tools/mothur/dist.shared.xml
+++ b/tools/mothur/dist.shared.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/fastq.info.xml b/tools/mothur/fastq.info.xml
index c1c730b5d52..9c53b98c913 100644
--- a/tools/mothur/fastq.info.xml
+++ b/tools/mothur/fastq.info.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/filter.seqs.xml b/tools/mothur/filter.seqs.xml
index 5f952a9019c..10d5d38e599 100644
--- a/tools/mothur/filter.seqs.xml
+++ b/tools/mothur/filter.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/filter.shared.xml b/tools/mothur/filter.shared.xml
index 48dffb20a93..892cc9b4bf4 100644
--- a/tools/mothur/filter.shared.xml
+++ b/tools/mothur/filter.shared.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.communitytype.xml b/tools/mothur/get.communitytype.xml
index bc228c106b2..825796b1dae 100644
--- a/tools/mothur/get.communitytype.xml
+++ b/tools/mothur/get.communitytype.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.coremicrobiome.xml b/tools/mothur/get.coremicrobiome.xml
index 23051f319a2..8bbc2df8545 100644
--- a/tools/mothur/get.coremicrobiome.xml
+++ b/tools/mothur/get.coremicrobiome.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.dists.xml b/tools/mothur/get.dists.xml
index 92428f6162d..af23a8959b7 100644
--- a/tools/mothur/get.dists.xml
+++ b/tools/mothur/get.dists.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.group.xml b/tools/mothur/get.group.xml
index e5e0f879366..e8549201f9e 100644
--- a/tools/mothur/get.group.xml
+++ b/tools/mothur/get.group.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.groups.xml b/tools/mothur/get.groups.xml
index 5597bef5132..2200404e446 100644
--- a/tools/mothur/get.groups.xml
+++ b/tools/mothur/get.groups.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.label.xml b/tools/mothur/get.label.xml
index cc432d20e7d..9a97c3c6cf6 100644
--- a/tools/mothur/get.label.xml
+++ b/tools/mothur/get.label.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.lineage.xml b/tools/mothur/get.lineage.xml
index 00b282061ee..a03efd73adc 100644
--- a/tools/mothur/get.lineage.xml
+++ b/tools/mothur/get.lineage.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.mimarkspackage.xml b/tools/mothur/get.mimarkspackage.xml
index f077ad98cf1..42d2c7e177c 100644
--- a/tools/mothur/get.mimarkspackage.xml
+++ b/tools/mothur/get.mimarkspackage.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.otulabels.xml b/tools/mothur/get.otulabels.xml
index 079daa1d796..cafaa6fa6b2 100644
--- a/tools/mothur/get.otulabels.xml
+++ b/tools/mothur/get.otulabels.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.otulist.xml b/tools/mothur/get.otulist.xml
index c9401ef3e41..fd77dfcaf71 100644
--- a/tools/mothur/get.otulist.xml
+++ b/tools/mothur/get.otulist.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.oturep.xml b/tools/mothur/get.oturep.xml
index 79953419449..599a21ce953 100644
--- a/tools/mothur/get.oturep.xml
+++ b/tools/mothur/get.oturep.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.otus.xml b/tools/mothur/get.otus.xml
index 7f4ef815e4d..ffbf51cb9de 100644
--- a/tools/mothur/get.otus.xml
+++ b/tools/mothur/get.otus.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.rabund.xml b/tools/mothur/get.rabund.xml
index 2a226ed9fc4..f627af32f1f 100644
--- a/tools/mothur/get.rabund.xml
+++ b/tools/mothur/get.rabund.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.relabund.xml b/tools/mothur/get.relabund.xml
index 165ebf6edfe..418e3a8ea50 100644
--- a/tools/mothur/get.relabund.xml
+++ b/tools/mothur/get.relabund.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.sabund.xml b/tools/mothur/get.sabund.xml
index f69d97b5180..1ac9954a23f 100644
--- a/tools/mothur/get.sabund.xml
+++ b/tools/mothur/get.sabund.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.seqs.xml b/tools/mothur/get.seqs.xml
index a45d6b07ea3..13b06891745 100644
--- a/tools/mothur/get.seqs.xml
+++ b/tools/mothur/get.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/get.sharedseqs.xml b/tools/mothur/get.sharedseqs.xml
index e021f22abf5..96a8a90bc8f 100644
--- a/tools/mothur/get.sharedseqs.xml
+++ b/tools/mothur/get.sharedseqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/heatmap.bin.xml b/tools/mothur/heatmap.bin.xml
index 68a37a02e36..7dd1e2bb576 100644
--- a/tools/mothur/heatmap.bin.xml
+++ b/tools/mothur/heatmap.bin.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/heatmap.sim.xml b/tools/mothur/heatmap.sim.xml
index d7d2eb9d6e7..6c1934a75e8 100644
--- a/tools/mothur/heatmap.sim.xml
+++ b/tools/mothur/heatmap.sim.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/homova.xml b/tools/mothur/homova.xml
index 7854aef28b2..c622e3f93fa 100644
--- a/tools/mothur/homova.xml
+++ b/tools/mothur/homova.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/indicator.xml b/tools/mothur/indicator.xml
index ef281bb7400..4b35cdaeb54 100644
--- a/tools/mothur/indicator.xml
+++ b/tools/mothur/indicator.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/lefse.xml b/tools/mothur/lefse.xml
index 1f99a3d148d..18c0c15d955 100644
--- a/tools/mothur/lefse.xml
+++ b/tools/mothur/lefse.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/libshuff.xml b/tools/mothur/libshuff.xml
index 383299d4f2f..e5638e8efbc 100644
--- a/tools/mothur/libshuff.xml
+++ b/tools/mothur/libshuff.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/list.otulabels.xml b/tools/mothur/list.otulabels.xml
index 11162f462e6..f2bafac375b 100644
--- a/tools/mothur/list.otulabels.xml
+++ b/tools/mothur/list.otulabels.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/list.seqs.xml b/tools/mothur/list.seqs.xml
index 482f4414db3..dd2b942b6e0 100644
--- a/tools/mothur/list.seqs.xml
+++ b/tools/mothur/list.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/macros.xml b/tools/mothur/macros.xml
index ddcd31cd486..f4055a00464 100644
--- a/tools/mothur/macros.xml
+++ b/tools/mothur/macros.xml
@@ -1,5 +1,10 @@
 <macros>
     <token name="@WRAPPER_VERSION@">1.39.5</token>
+    <xml name="biotools">
+        <xrefs>
+            <xref type="bio.tools">mothur</xref>
+        </xrefs>
+    </xml>
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@WRAPPER_VERSION@">mothur</requirement>
diff --git a/tools/mothur/make.biom.xml b/tools/mothur/make.biom.xml
index 00a3bb551fd..4065b4f3bf9 100644
--- a/tools/mothur/make.biom.xml
+++ b/tools/mothur/make.biom.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/make.contigs.xml b/tools/mothur/make.contigs.xml
index c0e662a0f33..08569c99f72 100644
--- a/tools/mothur/make.contigs.xml
+++ b/tools/mothur/make.contigs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/make.design.xml b/tools/mothur/make.design.xml
index a8db0091e88..1f6cf276d1e 100644
--- a/tools/mothur/make.design.xml
+++ b/tools/mothur/make.design.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/make.fastq.xml b/tools/mothur/make.fastq.xml
index 2f60acef586..1bf0e211720 100644
--- a/tools/mothur/make.fastq.xml
+++ b/tools/mothur/make.fastq.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/make.group.xml b/tools/mothur/make.group.xml
index 3f78964ab67..d5c5003894e 100644
--- a/tools/mothur/make.group.xml
+++ b/tools/mothur/make.group.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/make.lefse.xml b/tools/mothur/make.lefse.xml
index 0d5448fd7b2..6ac7ddeb0eb 100644
--- a/tools/mothur/make.lefse.xml
+++ b/tools/mothur/make.lefse.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/make.lookup.xml b/tools/mothur/make.lookup.xml
index 6c82f758c35..8e7fe60570a 100644
--- a/tools/mothur/make.lookup.xml
+++ b/tools/mothur/make.lookup.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/make.shared.xml b/tools/mothur/make.shared.xml
index 015d3683321..6865128c094 100644
--- a/tools/mothur/make.shared.xml
+++ b/tools/mothur/make.shared.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/make.sra.xml b/tools/mothur/make.sra.xml
index dbe43b9bf43..9b85ead9126 100644
--- a/tools/mothur/make.sra.xml
+++ b/tools/mothur/make.sra.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/mantel.xml b/tools/mothur/mantel.xml
index 6e316cc3e61..0f47113dde2 100644
--- a/tools/mothur/mantel.xml
+++ b/tools/mothur/mantel.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/merge.count.xml b/tools/mothur/merge.count.xml
index 7685a138296..769ee371c50 100644
--- a/tools/mothur/merge.count.xml
+++ b/tools/mothur/merge.count.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/merge.files.xml b/tools/mothur/merge.files.xml
index 78bc126dcbd..60c7130f749 100644
--- a/tools/mothur/merge.files.xml
+++ b/tools/mothur/merge.files.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/merge.groups.xml b/tools/mothur/merge.groups.xml
index 1ea468b1c93..6a374b54d32 100644
--- a/tools/mothur/merge.groups.xml
+++ b/tools/mothur/merge.groups.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/merge.sfffiles.xml b/tools/mothur/merge.sfffiles.xml
index 6e87f0c43b4..69adbd65358 100644
--- a/tools/mothur/merge.sfffiles.xml
+++ b/tools/mothur/merge.sfffiles.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/merge.taxsummary.xml b/tools/mothur/merge.taxsummary.xml
index 2b762bd407e..15b9d1938b8 100644
--- a/tools/mothur/merge.taxsummary.xml
+++ b/tools/mothur/merge.taxsummary.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/metastats.xml b/tools/mothur/metastats.xml
index f392763017a..84c3f033905 100644
--- a/tools/mothur/metastats.xml
+++ b/tools/mothur/metastats.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/mimarks.attributes.xml b/tools/mothur/mimarks.attributes.xml
index 4fe23d6a01b..c9a1b4a6c30 100644
--- a/tools/mothur/mimarks.attributes.xml
+++ b/tools/mothur/mimarks.attributes.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/nmds.xml b/tools/mothur/nmds.xml
index 071a1c5e0df..c16f593d10f 100644
--- a/tools/mothur/nmds.xml
+++ b/tools/mothur/nmds.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/normalize.shared.xml b/tools/mothur/normalize.shared.xml
index b6867ae7e24..4645d5d37e9 100644
--- a/tools/mothur/normalize.shared.xml
+++ b/tools/mothur/normalize.shared.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/otu.association.xml b/tools/mothur/otu.association.xml
index d70bacd0770..f76f30f340f 100644
--- a/tools/mothur/otu.association.xml
+++ b/tools/mothur/otu.association.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/otu.hierarchy.xml b/tools/mothur/otu.hierarchy.xml
index 4960da91777..4535680d190 100644
--- a/tools/mothur/otu.hierarchy.xml
+++ b/tools/mothur/otu.hierarchy.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/pairwise.seqs.xml b/tools/mothur/pairwise.seqs.xml
index fba5a9f4d5f..12628e6f956 100644
--- a/tools/mothur/pairwise.seqs.xml
+++ b/tools/mothur/pairwise.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/parse.list.xml b/tools/mothur/parse.list.xml
index e825ecf6d8c..c7f18290883 100644
--- a/tools/mothur/parse.list.xml
+++ b/tools/mothur/parse.list.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/parsimony.xml b/tools/mothur/parsimony.xml
index 9c0c6fd8db0..e14b5275b53 100644
--- a/tools/mothur/parsimony.xml
+++ b/tools/mothur/parsimony.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/pca.xml b/tools/mothur/pca.xml
index 1bc1d09d16d..19544957113 100644
--- a/tools/mothur/pca.xml
+++ b/tools/mothur/pca.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/pcoa.xml b/tools/mothur/pcoa.xml
index a19dc9ff0d6..6b9a82bcce6 100644
--- a/tools/mothur/pcoa.xml
+++ b/tools/mothur/pcoa.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/pcr.seqs.xml b/tools/mothur/pcr.seqs.xml
index 498f7f343ce..c247789edf4 100644
--- a/tools/mothur/pcr.seqs.xml
+++ b/tools/mothur/pcr.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/phylo.diversity.xml b/tools/mothur/phylo.diversity.xml
index a92f8e3f8a6..23dec403b7b 100644
--- a/tools/mothur/phylo.diversity.xml
+++ b/tools/mothur/phylo.diversity.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/phylotype.xml b/tools/mothur/phylotype.xml
index 871b5a79fcc..1a28b6b024c 100644
--- a/tools/mothur/phylotype.xml
+++ b/tools/mothur/phylotype.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/pre.cluster.xml b/tools/mothur/pre.cluster.xml
index a56fe7649b7..9c36b7d6f7a 100644
--- a/tools/mothur/pre.cluster.xml
+++ b/tools/mothur/pre.cluster.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/primer.design.xml b/tools/mothur/primer.design.xml
index 178a987a7a5..c8b91a992af 100644
--- a/tools/mothur/primer.design.xml
+++ b/tools/mothur/primer.design.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/rarefaction.shared.xml b/tools/mothur/rarefaction.shared.xml
index 19b276e6f4a..40a6e02528f 100644
--- a/tools/mothur/rarefaction.shared.xml
+++ b/tools/mothur/rarefaction.shared.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/rarefaction.single.xml b/tools/mothur/rarefaction.single.xml
index e85a13ce775..344ec25fa8a 100644
--- a/tools/mothur/rarefaction.single.xml
+++ b/tools/mothur/rarefaction.single.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/remove.dists.xml b/tools/mothur/remove.dists.xml
index 341091380b8..44469600166 100644
--- a/tools/mothur/remove.dists.xml
+++ b/tools/mothur/remove.dists.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/remove.groups.xml b/tools/mothur/remove.groups.xml
index 13ad306fb8d..fe7af425ad9 100644
--- a/tools/mothur/remove.groups.xml
+++ b/tools/mothur/remove.groups.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/remove.lineage.xml b/tools/mothur/remove.lineage.xml
index d909b418289..4031375b6d3 100644
--- a/tools/mothur/remove.lineage.xml
+++ b/tools/mothur/remove.lineage.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/remove.otulabels.xml b/tools/mothur/remove.otulabels.xml
index b5281515d35..5b0d5f28595 100644
--- a/tools/mothur/remove.otulabels.xml
+++ b/tools/mothur/remove.otulabels.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/remove.otus.xml b/tools/mothur/remove.otus.xml
index 8e4fad2402d..fbf02a7f88f 100644
--- a/tools/mothur/remove.otus.xml
+++ b/tools/mothur/remove.otus.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/remove.rare.xml b/tools/mothur/remove.rare.xml
index 62010dcb9a2..f75fb2c4389 100644
--- a/tools/mothur/remove.rare.xml
+++ b/tools/mothur/remove.rare.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/remove.seqs.xml b/tools/mothur/remove.seqs.xml
index d65579681de..c0d49498838 100644
--- a/tools/mothur/remove.seqs.xml
+++ b/tools/mothur/remove.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/rename.seqs.xml b/tools/mothur/rename.seqs.xml
index 545c8698b24..8f9a71302c3 100644
--- a/tools/mothur/rename.seqs.xml
+++ b/tools/mothur/rename.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/reverse.seqs.xml b/tools/mothur/reverse.seqs.xml
index 8180f7fe5ef..7ca051f1b07 100644
--- a/tools/mothur/reverse.seqs.xml
+++ b/tools/mothur/reverse.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/screen.seqs.xml b/tools/mothur/screen.seqs.xml
index 63bbb788a48..9c0db595691 100644
--- a/tools/mothur/screen.seqs.xml
+++ b/tools/mothur/screen.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/sens.spec.xml b/tools/mothur/sens.spec.xml
index 2f28017d815..66dc3ebf562 100644
--- a/tools/mothur/sens.spec.xml
+++ b/tools/mothur/sens.spec.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/seq.error.xml b/tools/mothur/seq.error.xml
index b9832edbf64..264305211cc 100644
--- a/tools/mothur/seq.error.xml
+++ b/tools/mothur/seq.error.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/sffinfo.xml b/tools/mothur/sffinfo.xml
index a086ee8eb66..ec6f1c2d3f9 100644
--- a/tools/mothur/sffinfo.xml
+++ b/tools/mothur/sffinfo.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/shhh.flows.xml b/tools/mothur/shhh.flows.xml
index 6f8efd9d96c..1fe95ca7f6d 100644
--- a/tools/mothur/shhh.flows.xml
+++ b/tools/mothur/shhh.flows.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/shhh.seqs.xml b/tools/mothur/shhh.seqs.xml
index d985e272a8d..947fe0851bc 100644
--- a/tools/mothur/shhh.seqs.xml
+++ b/tools/mothur/shhh.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/sort.seqs.xml b/tools/mothur/sort.seqs.xml
index bd73b3c03c7..c2d68f948e8 100644
--- a/tools/mothur/sort.seqs.xml
+++ b/tools/mothur/sort.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/split.abund.xml b/tools/mothur/split.abund.xml
index 950b2d070ae..c0b78c72471 100644
--- a/tools/mothur/split.abund.xml
+++ b/tools/mothur/split.abund.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/split.groups.xml b/tools/mothur/split.groups.xml
index 2fa184cfa3c..7f0e792bd1b 100644
--- a/tools/mothur/split.groups.xml
+++ b/tools/mothur/split.groups.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/sub.sample.xml b/tools/mothur/sub.sample.xml
index d6c8ab48514..8b525206cf6 100644
--- a/tools/mothur/sub.sample.xml
+++ b/tools/mothur/sub.sample.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/summary.qual.xml b/tools/mothur/summary.qual.xml
index addb0cd0851..eda091ebdfc 100644
--- a/tools/mothur/summary.qual.xml
+++ b/tools/mothur/summary.qual.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/summary.seqs.xml b/tools/mothur/summary.seqs.xml
index 5e9d57493e6..00dcc4a6f6b 100644
--- a/tools/mothur/summary.seqs.xml
+++ b/tools/mothur/summary.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/summary.shared.xml b/tools/mothur/summary.shared.xml
index e5330a1eedb..5b1f651d1a0 100644
--- a/tools/mothur/summary.shared.xml
+++ b/tools/mothur/summary.shared.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/summary.single.xml b/tools/mothur/summary.single.xml
index c163d4097a4..048088bcdfb 100644
--- a/tools/mothur/summary.single.xml
+++ b/tools/mothur/summary.single.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/summary.tax.xml b/tools/mothur/summary.tax.xml
index b9ec5e0c56b..99613ba14cf 100644
--- a/tools/mothur/summary.tax.xml
+++ b/tools/mothur/summary.tax.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/taxonomy-to-krona.xml b/tools/mothur/taxonomy-to-krona.xml
index 969fcc88b26..63e017cd4bf 100644
--- a/tools/mothur/taxonomy-to-krona.xml
+++ b/tools/mothur/taxonomy-to-krona.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <command detect_errors="exit_code"><![CDATA[
 cat $inputfile
 | tail -n +2               ## remove header line
diff --git a/tools/mothur/tree.shared.xml b/tools/mothur/tree.shared.xml
index d5ff92a3d3f..28f16969156 100644
--- a/tools/mothur/tree.shared.xml
+++ b/tools/mothur/tree.shared.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/trim.flows.xml b/tools/mothur/trim.flows.xml
index 97e44a8d188..a5fa5c0610a 100644
--- a/tools/mothur/trim.flows.xml
+++ b/tools/mothur/trim.flows.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/trim.seqs.xml b/tools/mothur/trim.seqs.xml
index 42c153bea62..b2a16ee0964 100644
--- a/tools/mothur/trim.seqs.xml
+++ b/tools/mothur/trim.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/unifrac.unweighted.xml b/tools/mothur/unifrac.unweighted.xml
index 78cb1e7ddb3..1e4793c4ee6 100644
--- a/tools/mothur/unifrac.unweighted.xml
+++ b/tools/mothur/unifrac.unweighted.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/unifrac.weighted.xml b/tools/mothur/unifrac.weighted.xml
index fe6082c2a79..7d843a6cc9e 100644
--- a/tools/mothur/unifrac.weighted.xml
+++ b/tools/mothur/unifrac.weighted.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/unique.seqs.xml b/tools/mothur/unique.seqs.xml
index 6e3d4f991b5..0274dae6f28 100644
--- a/tools/mothur/unique.seqs.xml
+++ b/tools/mothur/unique.seqs.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>
diff --git a/tools/mothur/venn.xml b/tools/mothur/venn.xml
index 121216885fc..7876e65be27 100644
--- a/tools/mothur/venn.xml
+++ b/tools/mothur/venn.xml
@@ -3,6 +3,7 @@
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="biotools"/>
     <expand macro="requirements"/>
     <expand macro="stdio"/>
     <expand macro="version_command"/>