diff --git a/tools/goseq/goseq.xml b/tools/goseq/goseq.xml
index 3b3d0e4e70b..618b2c83e66 100644
--- a/tools/goseq/goseq.xml
+++ b/tools/goseq/goseq.xml
@@ -10,19 +10,19 @@
         <edam_operation>operation_2436</edam_operation>
     </edam_operations>
     <macros>
-        <token name="@TOOL_VERSION@">1.46.0</token>
+        <token name="@TOOL_VERSION@">1.50.0</token>
         <token name="@VERSION_SUFFIX@">0</token>
     </macros>
     <requirements>
         <requirement type="package" version="@TOOL_VERSION@">bioconductor-goseq</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.hs.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.dm.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.dr.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.mm.eg.db</requirement>
-        <requirement type="package" version="3.14.0">bioconductor-org.rn.eg.db</requirement>
-        <requirement type="package" version="1.0.9">r-dplyr</requirement>
-        <requirement type="package" version="3.3.6">r-ggplot2</requirement>
-        <requirement type="package" version="1.7.1">r-optparse</requirement>
+        <requirement type="package" version="3.16.0">bioconductor-org.hs.eg.db</requirement>
+        <requirement type="package" version="3.16.0">bioconductor-org.dm.eg.db</requirement>
+        <requirement type="package" version="3.16.0">bioconductor-org.dr.eg.db</requirement>
+        <requirement type="package" version="3.16.0">bioconductor-org.mm.eg.db</requirement>
+        <requirement type="package" version="3.16.0">bioconductor-org.rn.eg.db</requirement>
+        <requirement type="package" version="1.0.10">r-dplyr</requirement>
+        <requirement type="package" version="3.4.0">r-ggplot2</requirement>
+        <requirement type="package" version="1.7.3">r-optparse</requirement>
     </requirements>
     <stdio>
         <regex match="Execution halted"