diff --git a/tools/bcftools/bcftools_mpileup.xml b/tools/bcftools/bcftools_mpileup.xml index ab4d356a0ea..b923426fda8 100644 --- a/tools/bcftools/bcftools_mpileup.xml +++ b/tools/bcftools/bcftools_mpileup.xml @@ -1,5 +1,4 @@ - - + Generate VCF or BCF containing genotype likelihoods for one or multiple alignment (BAM or CRAM) files mpileup @@ -93,7 +92,7 @@ bcftools @EXECUTABLE@ -F "${section.perform_indel_calling.minimum_gapped_read_fraction}" ${section.perform_indel_calling.gapped_read_per_sample} #if len( $section.perform_indel_calling.platform_list_repeat ): - -P "${ ",".join( [ str( platform.platform_entry ) for platform in $section.perform_indel_calling.platform_list_repeat ] ) }" + -P "${ ",".join( [ str( platform['platform_entry'] ) for platform in $section.perform_indel_calling.platform_list_repeat ] ) }" #end if #end if