diff --git a/tools/hyphy/macros.xml b/tools/hyphy/macros.xml
index 2ea8469bd43..0d039968273 100644
--- a/tools/hyphy/macros.xml
+++ b/tools/hyphy/macros.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-    <token name="@TOOL_VERSION@">2.5.60</token>
+    <token name="@TOOL_VERSION@">2.5.61</token>
     <xml name="inputs">
 	    <param name="input_file" type="data" format="fasta,fasta.gz,nex" label="Input FASTA or NEXUS file" help="If the input file type is NEXUS and it includes a valid newick tree, that tree will override an uploaded newick tree" />
         <param name="input_nhx" type="data" format="nhx,newick" optional="true" label="Input newick file"/>