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Test sqlite file does not create gene expression plots or heat maps in galaxy #465

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hershbc opened this issue Apr 28, 2017 · 1 comment

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@hershbc
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hershbc commented Apr 28, 2017

Hello,
I've been struggling to use cummeRbund in galaxy for gene expression and heat map generation for my own data. Assuming that something wasn't processed correctly, I went into the test folder here on github for the cummerbund wrapper and took the sqlite file and loaded it into galaxy. cummeRbund still cannot create gene expression plots or heat maps because it does not find any gene_IDs. I apologize if I am not using the tool correctly, but I would really like to be able to generate these figures. Could someone please help me understand this? And perhaps provide a test file for me to use? I have read every post on biostars about cummeRbund in galaxy and have not found an answer.

screen shot 2017-04-28 at 3 14 08 pm

@jennaj
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jennaj commented May 1, 2017

Duplicate, see #340

@jennaj jennaj closed this as completed May 1, 2017
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