From 1814a7036169ba4eaf7aa0446b21d93a122e55c3 Mon Sep 17 00:00:00 2001 From: Simon Bray <32272674+simonbray@users.noreply.github.com> Date: Wed, 10 Nov 2021 11:57:20 +0100 Subject: [PATCH] remove --no_shed_install from PLANEMO_WORKFLOW_OPTIONS --- planemo_ci_actions.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/planemo_ci_actions.sh b/planemo_ci_actions.sh index dcf11db..71d57cf 100755 --- a/planemo_ci_actions.sh +++ b/planemo_ci_actions.sh @@ -3,7 +3,7 @@ set -exo pipefail PLANEMO_TEST_OPTIONS=("--database_connection" "$DATABASE_CONNECTION" "--galaxy_source" "https://github.com/$GALAXY_FORK/galaxy" "--galaxy_branch" "$GALAXY_BRANCH" "--galaxy_python_version" "$PYTHON_VERSION") PLANEMO_CONTAINER_DEPENDENCIES=("--biocontainers" "--no_dependency_resolution" "--no_conda_auto_init") -PLANEMO_WORKFLOW_OPTIONS=("--shed_tool_conf" "/cvmfs/main.galaxyproject.org/config/shed_tool_conf.xml" "--no_shed_install" "--tool_data_table" "/cvmfs/data.galaxyproject.org/byhand/location/tool_data_table_conf.xml" "--tool_data_table" "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml" "--docker_extra_volume" "/cvmfs") +PLANEMO_WORKFLOW_OPTIONS=("--shed_tool_conf" "/cvmfs/main.galaxyproject.org/config/shed_tool_conf.xml" "--tool_data_table" "/cvmfs/data.galaxyproject.org/byhand/location/tool_data_table_conf.xml" "--tool_data_table" "/cvmfs/data.galaxyproject.org/managed/location/tool_data_table_conf.xml" "--docker_extra_volume" "/cvmfs") read -ra ADDITIONAL_PLANEMO_OPTIONS <<< "$ADDITIONAL_PLANEMO_OPTIONS"