From 86e1591853ca34698deda74b25b886bfc109967e Mon Sep 17 00:00:00 2001 From: Dannon Baker Date: Tue, 17 Dec 2024 09:57:23 -0500 Subject: [PATCH 1/3] Add annotation for vgp1 kmer profiling workflow --- .../kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga index 5c393fb3d..161a72f10 100644 --- a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga @@ -1,6 +1,6 @@ { "a_galaxy_workflow": "true", - "annotation": "", + "annotation": "Performs k-mer profiling on PacBio data and generates GenomeScope plots and summary for genome characteristics assessment.", "comments": [], "creator": [ { From 11147551921ba3b40949756f651b37ed9b684f7b Mon Sep 17 00:00:00 2001 From: Dannon Baker Date: Tue, 17 Dec 2024 11:09:43 -0500 Subject: [PATCH 2/3] Update changelog and increment version to 0.1.9; add workflow annotation --- .../VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md | 3 +++ .../kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga | 2 +- 2 files changed, 4 insertions(+), 1 deletion(-) diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md index 8d550d3e8..c617502d7 100644 --- a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/CHANGELOG.md @@ -1,5 +1,8 @@ # Changelog +## [0.1.9] 2024-12-17 +### Added +- Annotation for workflow describing its function ## [0.1.8] 2024-12-03 diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga index 161a72f10..a57db03d4 100644 --- a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1.ga @@ -15,7 +15,7 @@ ], "format-version": "0.1", "license": "CC-BY-4.0", - "release": "0.1.8", + "release": "0.1.9", "name": "kmer-profiling-hifi-VGP1", "report": { "markdown": "\n# Workflow Execution Report\n\n\n```galaxy\ninvocation_time()\n```\n\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope linear plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope log plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope transformed linear plot\")\n```\n\n```galaxy\nhistory_dataset_as_image(output=\"GenomeScope transformed log plot\")\n```\n\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n" From 6acb4bd0fe6f8de3124a6bbc08194a7b74795b27 Mon Sep 17 00:00:00 2001 From: mvdbeek Date: Tue, 17 Dec 2024 17:29:39 +0100 Subject: [PATCH 3/3] Make test slightly more lentient --- .../kmer-profiling-hifi-VGP1-tests.yml | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1-tests.yml b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1-tests.yml index 3f79a85b4..8dbe5c31f 100644 --- a/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1-tests.yml +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-VGP1/kmer-profiling-hifi-VGP1-tests.yml @@ -29,16 +29,16 @@ delta: 10000 GenomeScope summary: asserts: - has_text: - text: '27,842 bp' - has_text: - text: '35,913 bp' + - has_text_matching: + expression: '27,84. bp' + - has_text_matching: + expression: '35,91. bp' GenomeScope Model Parameters: asserts: - has_text: - text: '0.0918418396430493' - has_text: - text: '27.44263' + - has_text_matching: + expression: '0.09184.*' + - has_text_matching: + expression: '27.44.*' Merged Meryl Database: asserts: has_size: