From d76605eb319e6afb082589f6f0f1254199613e09 Mon Sep 17 00:00:00 2001 From: Delphine-L Date: Tue, 3 Dec 2024 18:32:59 +0000 Subject: [PATCH] deploy: 8422bb36b04f7c563865fc894a4c6a3e6d2c86d1 --- 200.html | 12 +- 404.html | 12 +- _nuxt/{Dz2NWXRd.js => 254NzmzZ.js} | 2 +- _nuxt/{D8JvN5N9.js => 2SrELmMF.js} | 2 +- _nuxt/{BskFReNC.js => 2cYjC8Xq.js} | 2 +- _nuxt/7M4RmZ3s.js | 1 - _nuxt/{CPgkGufK.js => BE6RnIX8.js} | 2 +- _nuxt/{xhLJNihf.js => BF0SaCaZ.js} | 2 +- _nuxt/{Dv6gvx3e.js => BSDu85TT.js} | 2 +- _nuxt/{CAEwLUha.js => BTLhg7ri.js} | 2 +- _nuxt/{BOPBGMUD.js => BUls4DEx.js} | 2 +- _nuxt/{CbRSDbiI.js => BVIB1742.js} | 2 +- _nuxt/{CYePSRit.js => BaVUa2ki.js} | 2 +- _nuxt/{CcIlz9dV.js => Bc-ryf-9.js} | 2 +- _nuxt/{DM-J9RMn.js => BdZ5xv6w.js} | 2 +- _nuxt/{C_9vAFvj.js => BgV0WkfT.js} | 10 +- _nuxt/{DACF58_Y.js => BrvregzE.js} | 2 +- _nuxt/{CUOgIqDd.js => BuUGu-UN.js} | 2 +- _nuxt/C3FVmmcy.js | 1 + _nuxt/{C_U1LpUy.js => C5koRzxw.js} | 2 +- _nuxt/{VJ12H0Wf.js => CBeN3zPT.js} | 2 +- 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| 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- .../_payload.json | 2 +- .../index.html | 20 +- workflow_manifest.json | 195 ++++++++++-------- 223 files changed, 1093 insertions(+), 1074 deletions(-) rename _nuxt/{Dz2NWXRd.js => 254NzmzZ.js} (85%) rename _nuxt/{D8JvN5N9.js => 2SrELmMF.js} (96%) rename _nuxt/{BskFReNC.js => 2cYjC8Xq.js} (77%) delete mode 100644 _nuxt/7M4RmZ3s.js rename _nuxt/{CPgkGufK.js => BE6RnIX8.js} (85%) rename _nuxt/{xhLJNihf.js => BF0SaCaZ.js} (96%) rename _nuxt/{Dv6gvx3e.js => BSDu85TT.js} (63%) rename _nuxt/{CAEwLUha.js => BTLhg7ri.js} (64%) rename _nuxt/{BOPBGMUD.js => BUls4DEx.js} (99%) rename _nuxt/{CbRSDbiI.js => BVIB1742.js} (63%) rename _nuxt/{CYePSRit.js => BaVUa2ki.js} (81%) rename _nuxt/{CcIlz9dV.js => Bc-ryf-9.js} (99%) rename _nuxt/{DM-J9RMn.js => BdZ5xv6w.js} (85%) rename _nuxt/{C_9vAFvj.js => BgV0WkfT.js} (98%) rename _nuxt/{DACF58_Y.js => BrvregzE.js} (92%) rename _nuxt/{CUOgIqDd.js => BuUGu-UN.js} (63%) create mode 100644 _nuxt/C3FVmmcy.js rename _nuxt/{C_U1LpUy.js => C5koRzxw.js} (72%) rename _nuxt/{VJ12H0Wf.js => CBeN3zPT.js} (89%) rename _nuxt/{BSuLUTH_.js => CH8E2wj2.js} (63%) rename _nuxt/{CcWNGNmy.js => CNHD14bb.js} (64%) rename _nuxt/{AU7uLSXt.js => CTOnhLuQ.js} (78%) create mode 100644 _nuxt/CcHQf0Ct.js rename _nuxt/{Caq0jec5.js => Cy_mBHTY.js} (63%) rename _nuxt/{Dmyw87d7.js => D3x83tu9.js} (53%) rename _nuxt/{BGJFNgQY.js => DA9zSHq4.js} (85%) rename _nuxt/{yi4H0oRb.js => DB-_GB-A.js} (63%) rename _nuxt/{BYm-dKkT.js => DBCM6utH.js} (74%) rename _nuxt/{CS0_LroT.js => DHf3G7sq.js} (63%) rename _nuxt/{DS3De93v.js => DbMnrEZ8.js} (79%) rename _nuxt/{DL3ZsjuJ.js => DcPsXM2J.js} (84%) rename _nuxt/{DQUoDyIJ.js => DeDq0Kn0.js} (97%) rename _nuxt/{BxsI4Ymd.js => Dn4gbYY_.js} (85%) rename _nuxt/{_KsRTJS-.js => DnYJ--65.js} (65%) rename _nuxt/{n-TnsDZQ.js => DpOVMDwS.js} (64%) rename _nuxt/{BOkWqXKd.js => Ds2n6YOr.js} (98%) rename _nuxt/{C8aSm7JD.js => DvJyVPPi.js} (58%) rename _nuxt/{7mTV45DG.js => Dy_EqNAL.js} (64%) rename _nuxt/{C_ZD3PzU.js => HSvNoG48.js} (99%) rename _nuxt/{BTm3d9wW.js => IDPrYL4I.js} (80%) rename _nuxt/{BusV1XFR.js => InbIQgxR.js} (87%) rename _nuxt/{BF0G5yVF.js => Vqkcqsaz.js} (95%) rename _nuxt/{DuHDTiJh.js => WBVaJg5M.js} (97%) rename _nuxt/{Dc44QVNo.js => bG51me9W.js} (82%) rename _nuxt/builds/meta/{83e0e514-4ba7-45aa-9754-970ba410520b.json => cd6a3b9d-f963-4bcd-a85f-f570ee63cee8.json} (53%) rename _nuxt/{KyF-zNJy.js => jpY_ua07.js} (65%) rename _nuxt/{slob9Bby.js => jxyhNiMs.js} (85%) rename _nuxt/{DIqAAh5x.js => kCSsmCYq.js} (58%) rename _nuxt/{BId_SKvb.js => nOgvBrwk.js} (64%) delete mode 100644 _nuxt/v9Q5MAu4.js rename _nuxt/{C6qPjReR.js => wG8sthP3.js} (96%) delete mode 100644 api/_content/cache.1732965721542.json create mode 100644 api/_content/cache.1733250756973.json diff --git a/200.html b/200.html index 76297c461..de1f5c84c 100644 --- a/200.html +++ b/200.html @@ -3,9 +3,9 @@ - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/404.html b/404.html index 76297c461..de1f5c84c 100644 --- a/404.html +++ b/404.html @@ -3,9 +3,9 @@ - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/_nuxt/Dz2NWXRd.js b/_nuxt/254NzmzZ.js similarity index 85% rename from _nuxt/Dz2NWXRd.js rename to _nuxt/254NzmzZ.js index 416668d77..5d89bfad8 100644 --- a/_nuxt/Dz2NWXRd.js +++ b/_nuxt/254NzmzZ.js @@ -1 +1 @@ -import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./C_9vAFvj.js";const f=["id"],l=["href"],k=i({__name:"ProseH4",props:{id:{}},setup(r){const a=r,{headings:o}=c().public.mdc,d=p(()=>{var e;return a.id&&((e=o==null?void 0:o.anchorLinks)==null?void 0:e.h4)});return(e,m)=>(s(),n("h4",{id:e.id},[e.id&&u(d)?(s(),n("a",{key:0,href:`#${e.id}`},[t(e.$slots,"default")],8,l)):t(e.$slots,"default",{key:1})],8,f))}});export{k as default}; +import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./BgV0WkfT.js";const f=["id"],l=["href"],k=i({__name:"ProseH4",props:{id:{}},setup(r){const a=r,{headings:o}=c().public.mdc,d=p(()=>{var e;return a.id&&((e=o==null?void 0:o.anchorLinks)==null?void 0:e.h4)});return(e,m)=>(s(),n("h4",{id:e.id},[e.id&&u(d)?(s(),n("a",{key:0,href:`#${e.id}`},[t(e.$slots,"default")],8,l)):t(e.$slots,"default",{key:1})],8,f))}});export{k as default}; diff --git a/_nuxt/D8JvN5N9.js b/_nuxt/2SrELmMF.js similarity index 96% rename from _nuxt/D8JvN5N9.js rename to _nuxt/2SrELmMF.js index 89f768dbb..8767111b7 100644 --- a/_nuxt/D8JvN5N9.js +++ b/_nuxt/2SrELmMF.js @@ -1 +1 @@ -import{h as p,af as m,j as A,N as l,E as w}from"./C_9vAFvj.js";const S=["p","h1","h2","h3","h4","h5","h6","li"];function f(r,t){return r.type===t||typeof r.type=="object"&&r.type.tag===t||r.tag===t}function s(r){return f(r,"text")||f(r,Symbol.for("v-txt"))}function y(r){var t;return Array.isArray(r.children)||typeof r.children=="string"?r.children:typeof((t=r.children)==null?void 0:t.default)=="function"?r.children.default():[]}function a(r){if(!r)return"";if(Array.isArray(r))return r.map(a).join("");if(s(r))return r.children||r.value||"";const t=y(r);return Array.isArray(t)?t.map(a).filter(Boolean).join(""):""}function c(r,t=[]){if(Array.isArray(r))return r.flatMap(n=>c(n,t));let e=r;return t.some(n=>n==="*"||f(r,n))&&(e=y(r)||r,!Array.isArray(e)&&S.some(n=>f(r,n))&&(e=[e])),e}function h(r,t=[]){return r=Array.isArray(r)?r:[r],t.length?r.flatMap(e=>h(c(e,[t[0]]),t.slice(1))).filter(e=>!(s(e)&&a(e).trim()==="")):r}function g(r,t=[]){return typeof t=="string"&&(t=t.split(",").map(e=>e.trim()).filter(Boolean)),t.length?h(r,t).reduce((e,n)=>(s(n)?typeof e[e.length-1]=="string"?e[e.length-1]+=n.children:e.push(n.children):e.push(n),e),[]):r}const C=p({name:"MDCSlot",functional:!0,props:{name:{type:String,default:"default"},unwrap:{type:[Boolean,String],default:!1},use:{type:Function,default:void 0}},setup(r){const{parent:t}=w(),{default:e}=m(),n=A(()=>typeof r.unwrap=="string"?r.unwrap.split(" "):["*"]);return{fallbackSlot:e,tags:n,parent:t}},render({use:r,unwrap:t,fallbackSlot:e,tags:n,parent:i}){var o;try{let u=r;return typeof r=="string"&&(u=(i==null?void 0:i.slots[r])||((o=i==null?void 0:i.parent)==null?void 0:o.slots[r]),console.warn(`Please set :use="$slots.${r}" in component to enable reactivity`)),u?t?g(u(),n):[u()]:e?e():l("div")}catch{return l("div")}}}),_=p({props:{use:{type:Function,default:void 0},unwrap:{type:[Boolean,String],default:!1}},render(r){return l(C,r)}});export{_ as default}; +import{h as p,af as m,j as A,N as l,E as w}from"./BgV0WkfT.js";const S=["p","h1","h2","h3","h4","h5","h6","li"];function f(r,t){return r.type===t||typeof r.type=="object"&&r.type.tag===t||r.tag===t}function s(r){return f(r,"text")||f(r,Symbol.for("v-txt"))}function y(r){var t;return Array.isArray(r.children)||typeof r.children=="string"?r.children:typeof((t=r.children)==null?void 0:t.default)=="function"?r.children.default():[]}function a(r){if(!r)return"";if(Array.isArray(r))return r.map(a).join("");if(s(r))return r.children||r.value||"";const t=y(r);return Array.isArray(t)?t.map(a).filter(Boolean).join(""):""}function c(r,t=[]){if(Array.isArray(r))return r.flatMap(n=>c(n,t));let e=r;return t.some(n=>n==="*"||f(r,n))&&(e=y(r)||r,!Array.isArray(e)&&S.some(n=>f(r,n))&&(e=[e])),e}function h(r,t=[]){return r=Array.isArray(r)?r:[r],t.length?r.flatMap(e=>h(c(e,[t[0]]),t.slice(1))).filter(e=>!(s(e)&&a(e).trim()==="")):r}function g(r,t=[]){return typeof t=="string"&&(t=t.split(",").map(e=>e.trim()).filter(Boolean)),t.length?h(r,t).reduce((e,n)=>(s(n)?typeof e[e.length-1]=="string"?e[e.length-1]+=n.children:e.push(n.children):e.push(n),e),[]):r}const C=p({name:"MDCSlot",functional:!0,props:{name:{type:String,default:"default"},unwrap:{type:[Boolean,String],default:!1},use:{type:Function,default:void 0}},setup(r){const{parent:t}=w(),{default:e}=m(),n=A(()=>typeof r.unwrap=="string"?r.unwrap.split(" "):["*"]);return{fallbackSlot:e,tags:n,parent:t}},render({use:r,unwrap:t,fallbackSlot:e,tags:n,parent:i}){var o;try{let u=r;return typeof r=="string"&&(u=(i==null?void 0:i.slots[r])||((o=i==null?void 0:i.parent)==null?void 0:o.slots[r]),console.warn(`Please set :use="$slots.${r}" in component to enable reactivity`)),u?t?g(u(),n):[u()]:e?e():l("div")}catch{return l("div")}}}),_=p({props:{use:{type:Function,default:void 0},unwrap:{type:[Boolean,String],default:!1}},render(r){return l(C,r)}});export{_ as default}; diff --git a/_nuxt/BskFReNC.js b/_nuxt/2cYjC8Xq.js similarity index 77% rename from _nuxt/BskFReNC.js rename to _nuxt/2cYjC8Xq.js index 94a504cb2..2b0a76079 100644 --- a/_nuxt/BskFReNC.js +++ b/_nuxt/2cYjC8Xq.js @@ -1 +1 @@ -import{h as n,N as e}from"./C_9vAFvj.js";const r=n({name:"DocumentDrivenEmpty",props:{value:{type:Object,required:!0}},render({value:t}){return e("div",void 0,[e("p","Document is empty"),e("p",`Add content to it by opening ${t._source}/${t._file} file.`)])}});export{r as default}; +import{h as n,N as e}from"./BgV0WkfT.js";const r=n({name:"DocumentDrivenEmpty",props:{value:{type:Object,required:!0}},render({value:t}){return e("div",void 0,[e("p","Document is empty"),e("p",`Add content to it by opening ${t._source}/${t._file} file.`)])}});export{r as default}; diff --git a/_nuxt/7M4RmZ3s.js b/_nuxt/7M4RmZ3s.js deleted file mode 100644 index 77882928f..000000000 --- a/_nuxt/7M4RmZ3s.js +++ /dev/null @@ -1 +0,0 @@ -import{_ as o}from"./CcIlz9dV.js";import"./C_9vAFvj.js";import"./C-v3KzvZ.js";import"./BOkWqXKd.js";import"./IShi1APO.js";export{o as default}; diff --git a/_nuxt/CPgkGufK.js b/_nuxt/BE6RnIX8.js similarity index 85% rename from _nuxt/CPgkGufK.js rename to _nuxt/BE6RnIX8.js index f6b801e93..9aa5410bb 100644 --- a/_nuxt/CPgkGufK.js +++ b/_nuxt/BE6RnIX8.js @@ -1 +1 @@ -import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./C_9vAFvj.js";const f=["id"],l=["href"],k=i({__name:"ProseH5",props:{id:{}},setup(r){const a=r,{headings:o}=c().public.mdc,d=p(()=>{var e;return a.id&&((e=o==null?void 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i=!1;return(l,a)=>(et(),At(hc,{onResolve:ye(r)},{default:jn(()=>[ye(s)?(et(),At(ye(aw),{key:0,error:ye(s)},null,8,["error"])):ye(i)?(et(),At(ye(t),{key:1,context:ye(i)},null,8,["context"])):ye(o)?(et(),At(pd(ye(o)),{key:2})):(et(),At(ye(lw),{key:3}))]),_:1},8,["onResolve"]))}};let Ra;{let e;Ra=async function(){var i,l;if(e)return e;const r=!!((i=window.__NUXT__)!=null&&i.serverRendered||((l=document.getElementById("__NUXT_DATA__"))==null?void 0:l.dataset.ssr)==="true")?Dh(Pa):Fh(Pa),o=Wp({vueApp:r});async function s(a){await o.callHook("app:error",a),o.payload.error=o.payload.error||bo(a)}r.config.errorHandler=s;try{await Kp(o,cv)}catch(a){s(a)}try{await o.hooks.callHook("app:created",r),await o.hooks.callHook("app:beforeMount",r),r.mount(om),await o.hooks.callHook("app:mounted",r),await En()}catch(a){s(a)}return r.config.errorHandler===s&&(r.config.errorHandler=void 0),r},e=Ra().catch(t=>{throw console.error("Error while mounting app:",t),t})}export{uw as $,vw as A,gw as B,Me as C,ue as D,lr as E,je as F,Da as G,Af as H,ye as I,nt as J,fo as K,ua as L,Pw as M,Le as N,hn as O,Ed as P,pt as Q,Ec as R,En as S,hd as T,oo as U,Ew as V,at as W,Id as X,bw as Y,jt as Z,gf as _,Ot as a,kw as a0,kf as a1,Wc as a2,pf as a3,mo as a4,du as a5,kr as a6,Qe as a7,ww as a8,wy as a9,hi as aa,hc as ab,og as ac,Cw as ad,fr as ae,yw as af,Jr as ag,Z as ah,td as ai,By as aj,xw as ak,Jt as al,bo as am,hp as an,Cl as ao,go as ap,po as aq,se as ar,mn as as,Ie as at,Kr as au,fw as av,fe as b,Uc as c,Wr as d,Wy as e,hw as f,tm as g,ct as h,rc as i,_e as j,Sw as k,Q0 as l,Tw as m,rh as n,et as o,dw as p,At as q,mw as r,so as s,cw as t,Xg as u,_w as v,jn as w,pd as x,He as y,pw as z}; diff --git a/_nuxt/DACF58_Y.js b/_nuxt/BrvregzE.js similarity index 92% rename from _nuxt/DACF58_Y.js rename to _nuxt/BrvregzE.js index 4e6da9017..b4913880c 100644 --- a/_nuxt/DACF58_Y.js +++ b/_nuxt/BrvregzE.js @@ -1 +1 @@ -import{a as g,q as m}from"./BF0G5yVF.js";import{h as C,ai as S,j as b,ae as N,J as _,af 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t.value?e=m(t.value):e=m(),r.value&&(e=e.only(r.value)),o.value&&(e=e.without(o.value)),u.value&&(e=e.where(u.value)),f.value&&(e=e.sort(f.value)),l.value&&(e=e.limit(l.value)),d.value&&(e=e.skip(d.value)),s.value&&(e=e.where({_locale:s.value})),h.value==="one"?e.findOne().then(i):h.value==="surround"?t.value?p?e.findSurround(t.value):e.withSurround(t.value).findOne().then(i):(console.warn("[Content] Surround queries requires `path` prop to be set."),console.warn("[Content] Query without `path` will return regular `find()` results."),e.find().then(i)):e.find().then(i)});return{isPartial:y,data:v,refresh:n}},render(a){var c;const t=k(),{data:r,refresh:o,isPartial:u,path:f,only:l,without:d,where:s,sort:h,limit:y,skip:p,locale:i,find:v}=a,n={path:f,only:l,without:d,where:s,sort:h,limit:y,skip:p,locale:i,find:v};if(n.find==="one"){if(!r&&(t!=null&&t["not-found"]))return t["not-found"]({props:n,...this.$attrs});if(t!=null&&t.empty&&(r==null?void 0:r._type)==="markdown"&&!((c=r==null?void 0:r.body)!=null&&c.children.length))return t.empty({props:n,...this.$attrs})}else if((!r||!r.length)&&t!=null&&t["not-found"])return t["not-found"]({props:n,...this.$attrs});return t!=null&&t.default?t.default({data:r,refresh:o,isPartial:u,props:n,...this.$attrs}):((w,q)=>A("pre",null,JSON.stringify({message:"You should use slots with !",slot:w,data:q},null,2)))("default",{data:r,props:n,isPartial:u})}}),J=Q;export{J as default}; +import{a as g,q as m}from"./Vqkcqsaz.js";import{h as C,ai as S,j as b,ae as N,J as _,af as k,N as A}from"./BgV0WkfT.js";import{h as O}from"./IShi1APO.js";import"./Ds2n6YOr.js";const Q=C({name:"ContentQuery",props:{path:{type:String,required:!1,default:void 0},only:{type:Array,required:!1,default:void 0},without:{type:Array,required:!1,default:void 0},where:{type:Object,required:!1,default:void 0},sort:{type:Object,required:!1,default:void 0},limit:{type:Number,required:!1,default:void 0},skip:{type:Number,required:!1,default:void 0},locale:{type:String,required:!1,default:void 0},find:{type:String,required:!1,default:void 0}},async setup(a){const{path:t,only:r,without:o,where:u,sort:f,limit:l,skip:d,locale:s,find:h}=S(a),y=b(()=>{var e;return(e=t.value)==null?void 0:e.includes("/_")}),p=!N().public.content.experimental.advanceQuery;_(()=>a,()=>n(),{deep:!0});const i=e=>p?e!=null&&e.surround?e.surround:e!=null&&e._id||Array.isArray(e)?e:e==null?void 0:e.result:e.result,{data:v,refresh:n}=await g(`content-query-${O(a)}`,()=>{let e;return t.value?e=m(t.value):e=m(),r.value&&(e=e.only(r.value)),o.value&&(e=e.without(o.value)),u.value&&(e=e.where(u.value)),f.value&&(e=e.sort(f.value)),l.value&&(e=e.limit(l.value)),d.value&&(e=e.skip(d.value)),s.value&&(e=e.where({_locale:s.value})),h.value==="one"?e.findOne().then(i):h.value==="surround"?t.value?p?e.findSurround(t.value):e.withSurround(t.value).findOne().then(i):(console.warn("[Content] Surround queries requires `path` prop to be set."),console.warn("[Content] Query without `path` will return regular `find()` results."),e.find().then(i)):e.find().then(i)});return{isPartial:y,data:v,refresh:n}},render(a){var c;const t=k(),{data:r,refresh:o,isPartial:u,path:f,only:l,without:d,where:s,sort:h,limit:y,skip:p,locale:i,find:v}=a,n={path:f,only:l,without:d,where:s,sort:h,limit:y,skip:p,locale:i,find:v};if(n.find==="one"){if(!r&&(t!=null&&t["not-found"]))return t["not-found"]({props:n,...this.$attrs});if(t!=null&&t.empty&&(r==null?void 0:r._type)==="markdown"&&!((c=r==null?void 0:r.body)!=null&&c.children.length))return t.empty({props:n,...this.$attrs})}else if((!r||!r.length)&&t!=null&&t["not-found"])return t["not-found"]({props:n,...this.$attrs});return t!=null&&t.default?t.default({data:r,refresh:o,isPartial:u,props:n,...this.$attrs}):((w,q)=>A("pre",null,JSON.stringify({message:"You should use slots with !",slot:w,data:q},null,2)))("default",{data:r,props:n,isPartial:u})}}),J=Q;export{J as default}; diff --git a/_nuxt/CUOgIqDd.js b/_nuxt/BuUGu-UN.js similarity index 63% rename from _nuxt/CUOgIqDd.js rename to _nuxt/BuUGu-UN.js index 39a316966..248cd0fb2 100644 --- a/_nuxt/CUOgIqDd.js +++ b/_nuxt/BuUGu-UN.js @@ -1 +1 @@ -import{_ as r,o,c as t,r as s}from"./C_9vAFvj.js";const c={};function n(e,a){return o(),t("th",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as t,r as s}from"./BgV0WkfT.js";const c={};function n(e,a){return o(),t("th",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/C3FVmmcy.js b/_nuxt/C3FVmmcy.js new file mode 100644 index 000000000..4301ba9c6 --- /dev/null +++ b/_nuxt/C3FVmmcy.js @@ -0,0 +1 @@ +import{_ as m}from"./DbMnrEZ8.js";import"./BgV0WkfT.js";export{m as default}; diff --git a/_nuxt/C_U1LpUy.js b/_nuxt/C5koRzxw.js similarity index 72% rename from _nuxt/C_U1LpUy.js rename to _nuxt/C5koRzxw.js index 4860efe41..618456e44 100644 --- a/_nuxt/C_U1LpUy.js +++ b/_nuxt/C5koRzxw.js @@ -1 +1 @@ -import{h as o,I as s,o as n,c as r,d as e,v as a,a as t}from"./C_9vAFvj.js";const c={key:0},i=t("code",null,"script",-1),d=t("code",null,"ProseScript",-1),f=o({__name:"ProseScript",props:{src:{type:String,default:""}},setup(l){return(_,m)=>s(!1)?(n(),r("div",c,[e(" Rendering the "),i,e(" element is dangerous and is disabled by default. Consider implementing your own "),d,e(" element to have control over script rendering. ")])):a("",!0)}});export{f as default}; +import{h as o,I as s,o as n,c as r,d as e,v as a,a as t}from"./BgV0WkfT.js";const c={key:0},i=t("code",null,"script",-1),d=t("code",null,"ProseScript",-1),f=o({__name:"ProseScript",props:{src:{type:String,default:""}},setup(l){return(_,m)=>s(!1)?(n(),r("div",c,[e(" Rendering the "),i,e(" element is dangerous and is disabled by default. Consider implementing your own "),d,e(" element to have control over script rendering. ")])):a("",!0)}});export{f as default}; diff --git a/_nuxt/VJ12H0Wf.js b/_nuxt/CBeN3zPT.js similarity index 89% rename from _nuxt/VJ12H0Wf.js rename to _nuxt/CBeN3zPT.js index 8f10070a7..8a8941456 100644 --- a/_nuxt/VJ12H0Wf.js +++ b/_nuxt/CBeN3zPT.js @@ -1 +1 @@ -import{h as r,j as n,ao as c,ag as h,ae as o,ap as l,o as u,c as d,I as g}from"./C_9vAFvj.js";const f=["src","alt","width","height"],p=r({__name:"ProseImg",props:{src:{type:String,default:""},alt:{type:String,default:""},width:{type:[String,Number],default:void 0},height:{type:[String,Number],default:void 0}},setup(e){const t=e,i=n(()=>{var s;if((s=t.src)!=null&&s.startsWith("/")&&!t.src.startsWith("//")){const a=c(h(o().app.baseURL));if(a!=="/"&&!t.src.startsWith(a))return l(a,t.src)}return t.src});return(s,a)=>(u(),d("img",{src:g(i),alt:e.alt,width:e.width,height:e.height},null,8,f))}});export{p as default}; +import{h as r,j as n,ao as c,ag as h,ae as o,ap as l,o as u,c as d,I as g}from"./BgV0WkfT.js";const f=["src","alt","width","height"],p=r({__name:"ProseImg",props:{src:{type:String,default:""},alt:{type:String,default:""},width:{type:[String,Number],default:void 0},height:{type:[String,Number],default:void 0}},setup(e){const t=e,i=n(()=>{var s;if((s=t.src)!=null&&s.startsWith("/")&&!t.src.startsWith("//")){const a=c(h(o().app.baseURL));if(a!=="/"&&!t.src.startsWith(a))return l(a,t.src)}return t.src});return(s,a)=>(u(),d("img",{src:g(i),alt:e.alt,width:e.width,height:e.height},null,8,f))}});export{p as default}; diff --git a/_nuxt/BSuLUTH_.js b/_nuxt/CH8E2wj2.js similarity index 63% rename from _nuxt/BSuLUTH_.js rename to _nuxt/CH8E2wj2.js index a552f583d..2c1073890 100644 --- a/_nuxt/BSuLUTH_.js +++ b/_nuxt/CH8E2wj2.js @@ -1 +1 @@ -import{_ as r,o,c as s,r as t}from"./C_9vAFvj.js";const c={};function n(e,a){return o(),s("p",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as s,r as t}from"./BgV0WkfT.js";const c={};function n(e,a){return o(),s("p",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/CcWNGNmy.js b/_nuxt/CNHD14bb.js similarity index 64% rename from _nuxt/CcWNGNmy.js rename to _nuxt/CNHD14bb.js index 16cfe4699..2ffd06034 100644 --- a/_nuxt/CcWNGNmy.js +++ b/_nuxt/CNHD14bb.js @@ -1 +1 @@ -import{_ as o,o as r,c as n,r as c}from"./C_9vAFvj.js";const s={};function t(e,a){return r(),n("code",null,[c(e.$slots,"default")])}const _=o(s,[["render",t]]);export{_ as default}; +import{_ as o,o as r,c as n,r as c}from"./BgV0WkfT.js";const s={};function t(e,a){return r(),n("code",null,[c(e.$slots,"default")])}const _=o(s,[["render",t]]);export{_ as default}; diff --git a/_nuxt/AU7uLSXt.js b/_nuxt/CTOnhLuQ.js similarity index 78% rename from _nuxt/AU7uLSXt.js rename to _nuxt/CTOnhLuQ.js index 18a69d6f9..e7d65d823 100644 --- a/_nuxt/AU7uLSXt.js +++ b/_nuxt/CTOnhLuQ.js @@ -1 +1 @@ -import d from"./DACF58_Y.js";import{h as c,af as h,N as f}from"./C_9vAFvj.js";import"./BF0G5yVF.js";import"./IShi1APO.js";import"./BOkWqXKd.js";const u=(r,t)=>f("pre",null,JSON.stringify({message:"You should use slots with ",slot:r,data:t},null,2)),l=c({name:"ContentList",props:{path:{type:String,required:!1,default:void 0},query:{type:Object,required:!1,default:void 0}},render(r){const t=h(),{path:p,query:a}=r,m={...a||{},path:p||(a==null?void 0:a.path)||"/"};return f(d,m,{default:t!=null&&t.default?({data:e,refresh:o,isPartial:n})=>t.default({list:e,refresh:o,isPartial:n,...this.$attrs}):e=>u("default",e.data),empty:e=>t!=null&&t.empty?t.empty(e):u("default",e==null?void 0:e.data),"not-found":e=>{var o;return t!=null&&t["not-found"]?(o=t==null?void 0:t["not-found"])==null?void 0:o.call(t,e):u("not-found",e==null?void 0:e.data)}})}}),N=l;export{N as default}; +import d from"./BrvregzE.js";import{h as c,af as h,N as f}from"./BgV0WkfT.js";import"./Vqkcqsaz.js";import"./IShi1APO.js";import"./Ds2n6YOr.js";const u=(r,t)=>f("pre",null,JSON.stringify({message:"You should use slots with ",slot:r,data:t},null,2)),l=c({name:"ContentList",props:{path:{type:String,required:!1,default:void 0},query:{type:Object,required:!1,default:void 0}},render(r){const t=h(),{path:p,query:a}=r,m={...a||{},path:p||(a==null?void 0:a.path)||"/"};return f(d,m,{default:t!=null&&t.default?({data:e,refresh:o,isPartial:n})=>t.default({list:e,refresh:o,isPartial:n,...this.$attrs}):e=>u("default",e.data),empty:e=>t!=null&&t.empty?t.empty(e):u("default",e==null?void 0:e.data),"not-found":e=>{var o;return t!=null&&t["not-found"]?(o=t==null?void 0:t["not-found"])==null?void 0:o.call(t,e):u("not-found",e==null?void 0:e.data)}})}}),N=l;export{N as default}; diff --git a/_nuxt/CcHQf0Ct.js b/_nuxt/CcHQf0Ct.js new file mode 100644 index 000000000..f9a9c21a2 --- /dev/null +++ b/_nuxt/CcHQf0Ct.js @@ -0,0 +1 @@ +import{_ as o}from"./Bc-ryf-9.js";import"./BgV0WkfT.js";import"./C-v3KzvZ.js";import"./Ds2n6YOr.js";import"./IShi1APO.js";export{o as default}; diff --git a/_nuxt/Caq0jec5.js b/_nuxt/Cy_mBHTY.js similarity index 63% rename from _nuxt/Caq0jec5.js rename to _nuxt/Cy_mBHTY.js index 8d6bd1f23..6d5f9d8dc 100644 --- a/_nuxt/Caq0jec5.js +++ b/_nuxt/Cy_mBHTY.js @@ -1 +1 @@ -import{_ as r,o,c as s,r as t}from"./C_9vAFvj.js";const c={};function n(e,l){return o(),s("ul",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as s,r as t}from"./BgV0WkfT.js";const c={};function n(e,l){return o(),s("ul",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/Dmyw87d7.js b/_nuxt/D3x83tu9.js similarity index 53% rename from _nuxt/Dmyw87d7.js rename to _nuxt/D3x83tu9.js index 032c4d8f5..a5e640c38 100644 --- a/_nuxt/Dmyw87d7.js +++ b/_nuxt/D3x83tu9.js @@ -1 +1 @@ -import{_ as e,o as r,c}from"./C_9vAFvj.js";const o={};function t(n,s){return r(),c("hr")}const a=e(o,[["render",t]]);export{a as default}; +import{_ as e,o as r,c}from"./BgV0WkfT.js";const o={};function t(n,s){return r(),c("hr")}const a=e(o,[["render",t]]);export{a as default}; diff --git a/_nuxt/BGJFNgQY.js b/_nuxt/DA9zSHq4.js similarity index 85% rename from _nuxt/BGJFNgQY.js rename to _nuxt/DA9zSHq4.js index cd54f7902..74f07cbe9 100644 --- a/_nuxt/BGJFNgQY.js +++ b/_nuxt/DA9zSHq4.js @@ -1 +1 @@ -import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./C_9vAFvj.js";const f=["id"],l=["href"],k=i({__name:"ProseH6",props:{id:{}},setup(r){const a=r,{headings:o}=c().public.mdc,d=p(()=>{var e;return a.id&&((e=o==null?void 0:o.anchorLinks)==null?void 0:e.h6)});return(e,m)=>(s(),n("h6",{id:e.id},[e.id&&u(d)?(s(),n("a",{key:0,href:`#${e.id}`},[t(e.$slots,"default")],8,l)):t(e.$slots,"default",{key:1})],8,f))}});export{k as default}; +import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./BgV0WkfT.js";const f=["id"],l=["href"],k=i({__name:"ProseH6",props:{id:{}},setup(r){const a=r,{headings:o}=c().public.mdc,d=p(()=>{var e;return a.id&&((e=o==null?void 0:o.anchorLinks)==null?void 0:e.h6)});return(e,m)=>(s(),n("h6",{id:e.id},[e.id&&u(d)?(s(),n("a",{key:0,href:`#${e.id}`},[t(e.$slots,"default")],8,l)):t(e.$slots,"default",{key:1})],8,f))}});export{k as default}; diff --git a/_nuxt/yi4H0oRb.js b/_nuxt/DB-_GB-A.js similarity index 63% rename from _nuxt/yi4H0oRb.js rename to _nuxt/DB-_GB-A.js index 8e0817bd7..76dde87d6 100644 --- a/_nuxt/yi4H0oRb.js +++ b/_nuxt/DB-_GB-A.js @@ -1 +1 @@ -import{_ as r,o,c as t,r as s}from"./C_9vAFvj.js";const c={};function n(e,a){return o(),t("tr",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as t,r as s}from"./BgV0WkfT.js";const c={};function n(e,a){return o(),t("tr",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/BYm-dKkT.js b/_nuxt/DBCM6utH.js similarity 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__vite__fileDeps=["./BUls4DEx.js","./BgV0WkfT.js","./Vqkcqsaz.js","./IShi1APO.js","./Ds2n6YOr.js","./C-v3KzvZ.js"],__vite__mapDeps=i=>i.map(i=>__vite__fileDeps[i]); +import{q as f,w as m,e as v,s as g,j as d,u as l,a as h}from"./Vqkcqsaz.js";import{ae as _,ah as y,h as C,ai as w,j as N,aj as P,af as $,N as r,e as j}from"./BgV0WkfT.js";import{h as p}from"./IShi1APO.js";import{u as T}from"./Ds2n6YOr.js";const D=async e=>{const{content:t}=_().public;typeof(e==null?void 0:e.params)!="function"&&(e=f(e));const a=e.params(),s=t.experimental.stripQueryParameters?m(`/navigation/${`${p(a)}.${t.integrity}`}/${v(a)}.json`):m(`/navigation/${p(a)}.${t.integrity}.json`);if(g())return(await y(()=>import("./BUls4DEx.js"),__vite__mapDeps([0,1,2,3,4,5]),import.meta.url).then(o=>o.generateNavigation))(a);const n=await $fetch(s,{method:"GET",responseType:"json",params:t.experimental.stripQueryParameters?void 0:{_params:d(a),previewToken:T().getPreviewToken()}});if(typeof n=="string"&&n.startsWith(""))throw new Error("Not found");return n},E=C({name:"ContentNavigation",props:{query:{type:Object,required:!1,default:void 0}},async setup(e){const{query:t}=w(e),a=N(()=>{var n;return typeof((n=t.value)==null?void 0:n.params)=="function"?t.value.params():t.value});if(!a.value&&P("dd-navigation").value){const{navigation:n}=l();return{navigation:n}}const{data:s}=await h(`content-navigation-${p(a.value)}`,()=>D(a.value));return{navigation:s}},render(e){const t=$(),{navigation:a}=e,s=o=>r(j,{to:o._path},()=>o.title),n=(o,u)=>r("ul",u?{"data-level":u}:null,o.map(i=>i.children?r("li",null,[s(i),n(i.children,u+1)]):r("li",null,s(i)))),c=o=>n(o,0);return t!=null&&t.default?t.default({navigation:a,...this.$attrs}):c(a)}}),Q=E;export{Q as default}; diff --git a/_nuxt/CS0_LroT.js b/_nuxt/DHf3G7sq.js similarity index 63% rename from _nuxt/CS0_LroT.js rename to _nuxt/DHf3G7sq.js index a9acf84e5..35d51563f 100644 --- a/_nuxt/CS0_LroT.js +++ b/_nuxt/DHf3G7sq.js @@ -1 +1 @@ -import{_ as r,o,c as s,r as t}from"./C_9vAFvj.js";const c={};function n(e,a){return o(),s("li",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as s,r as t}from"./BgV0WkfT.js";const c={};function n(e,a){return o(),s("li",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/DS3De93v.js b/_nuxt/DbMnrEZ8.js similarity index 79% rename from _nuxt/DS3De93v.js rename to _nuxt/DbMnrEZ8.js index d4dd86fa9..7d0287360 100644 --- a/_nuxt/DS3De93v.js +++ b/_nuxt/DbMnrEZ8.js @@ -1 +1 @@ -import{h as t,r}from"./C_9vAFvj.js";const o=t({__name:"ProseCode",props:{code:{type:String,default:""},language:{type:String,default:null},filename:{type:String,default:null},highlights:{type:Array,default:()=>[]},meta:{type:String,default:null}},setup(n){return(e,a)=>r(e.$slots,"default")}});export{o as _}; +import{h as t,r}from"./BgV0WkfT.js";const o=t({__name:"ProseCode",props:{code:{type:String,default:""},language:{type:String,default:null},filename:{type:String,default:null},highlights:{type:Array,default:()=>[]},meta:{type:String,default:null}},setup(n){return(e,a)=>r(e.$slots,"default")}});export{o as _}; diff --git a/_nuxt/DL3ZsjuJ.js b/_nuxt/DcPsXM2J.js similarity index 84% rename from _nuxt/DL3ZsjuJ.js rename to _nuxt/DcPsXM2J.js index a2c062e08..b6516b0ef 100644 --- a/_nuxt/DL3ZsjuJ.js +++ b/_nuxt/DcPsXM2J.js @@ -1 +1 @@ -import{_ as c}from"./CcIlz9dV.js";import{h as l,J as s,af as d,N as o}from"./C_9vAFvj.js";import"./C-v3KzvZ.js";import"./BOkWqXKd.js";import"./IShi1APO.js";const _=l({name:"ContentRenderer",props:{value:{type:Object,required:!1,default:()=>({})},excerpt:{type:Boolean,default:!1},tag:{type:String,default:"div"}},setup(t){s(()=>t.excerpt,n=>{var e,a,i;n&&!((e=t.value)!=null&&e.excerpt)&&(console.warn(`No excerpt found for document content/${(a=t==null?void 0:t.value)==null?void 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_=l({name:"ContentRenderer",props:{value:{type:Object,required:!1,default:()=>({})},excerpt:{type:Boolean,default:!1},tag:{type:String,default:"div"}},setup(t){s(()=>t.excerpt,n=>{var e,a,i;n&&!((e=t.value)!=null&&e.excerpt)&&(console.warn(`No excerpt found for document content/${(a=t==null?void 0:t.value)==null?void 0:a._path}.${(i=t==null?void 0:t.value)==null?void 0:i._extension}!`),console.warn("Make sure to use in your content if you want to use excerpt feature."))},{immediate:!0})},render(t){var u,f;const n=d(),{value:e,excerpt:a,tag:i}=t,r=a?e==null?void 0:e.excerpt:e==null?void 0:e.body;return!((u=r==null?void 0:r.children)!=null&&u.length)&&(n!=null&&n.empty)?n.empty({value:e,excerpt:a,tag:i,...this.$attrs}):n!=null&&n.default?n.default({value:e,excerpt:a,tag:i,...this.$attrs}):(r==null?void 0:r.type)==="root"&&((f=r==null?void 0:r.children)!=null&&f.length)?o(c,{value:e,excerpt:a,tag:i,...this.$attrs}):o("pre",null,JSON.stringify({message:"You should use slots with 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;--un-drop-shadow: ;--un-grayscale: ;--un-hue-rotate: ;--un-invert: ;--un-saturate: ;--un-sepia: ;--un-backdrop-blur: ;--un-backdrop-brightness: ;--un-backdrop-contrast: ;--un-backdrop-grayscale: ;--un-backdrop-hue-rotate: ;--un-backdrop-invert: ;--un-backdrop-opacity: ;--un-backdrop-saturate: ;--un-backdrop-sepia: }'}]}),(z,S)=>{const a=p;return i(),u("div",b,[x,e("div",m,[e("h1",{class:"text-8xl sm:text-10xl font-medium mb-8",textContent:o(t.statusCode)},null,8,y),e("p",{class:"text-xl px-8 sm:px-0 sm:text-4xl font-light mb-16 leading-tight",textContent:o(t.description)},null,8,_),e("div",k,[c(a,{to:"/",class:"gradient-border text-md sm:text-xl py-2 px-4 sm:py-3 sm:px-6 cursor-pointer"},{default:d(()=>[l(o(t.backHome),1)]),_:1})])])])}}},C=r(w,[["__scopeId","data-v-73a07988"]]);export{C as default}; +import{_ as r,u as s,o as i,c as u,a as e,t as o,b as c,w as d,d as l,e as p,p as h,f}from"./BgV0WkfT.js";const g=t=>(h("data-v-73a07988"),t=t(),f(),t),b={class:"font-sans antialiased bg-white dark:bg-black text-black dark:text-white grid min-h-screen place-content-center overflow-hidden"},x=g(()=>e("div",{class:"fixed left-0 right-0 spotlight z-10"},null,-1)),m={class:"max-w-520px text-center z-20"},y=["textContent"],_=["textContent"],k={class:"w-full flex items-center justify-center"},w={__name:"error-404",props:{appName:{type:String,default:"Nuxt"},version:{type:String,default:""},statusCode:{type:Number,default:404},statusMessage:{type:String,default:"Not Found"},description:{type:String,default:"Sorry, the page you are looking for could not be found."},backHome:{type:String,default:"Go back home"}},setup(t){const n=t;return s({title:`${n.statusCode} - ${n.statusMessage} | ${n.appName}`,script:[],style:[{children:'*,:before,:after{box-sizing:border-box;border-width:0;border-style:solid;border-color:var(--un-default-border-color, #e5e7eb)}:before,:after{--un-content:""}html{line-height:1.5;-webkit-text-size-adjust:100%;-moz-tab-size:4;tab-size:4;font-family:ui-sans-serif,system-ui,sans-serif,"Apple Color Emoji","Segoe UI Emoji",Segoe UI Symbol,"Noto Color Emoji";font-feature-settings:normal;font-variation-settings:normal;-webkit-tap-highlight-color:transparent}body{margin:0;line-height:inherit}h1{font-size:inherit;font-weight:inherit}a{color:inherit;text-decoration:inherit}h1,p{margin:0}*,:before,:after{--un-rotate:0;--un-rotate-x:0;--un-rotate-y:0;--un-rotate-z:0;--un-scale-x:1;--un-scale-y:1;--un-scale-z:1;--un-skew-x:0;--un-skew-y:0;--un-translate-x:0;--un-translate-y:0;--un-translate-z:0;--un-pan-x: ;--un-pan-y: ;--un-pinch-zoom: ;--un-scroll-snap-strictness:proximity;--un-ordinal: ;--un-slashed-zero: ;--un-numeric-figure: ;--un-numeric-spacing: ;--un-numeric-fraction: ;--un-border-spacing-x:0;--un-border-spacing-y:0;--un-ring-offset-shadow:0 0 rgb(0 0 0 / 0);--un-ring-shadow:0 0 rgb(0 0 0 / 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Here, MaxQuant data will be interpreted using MSstats by applying a rigorous statistical framework to understand data distribution and variability. Systematic variations are accounted for using subsequent normalization. Users can define the experimental design used by MSstats, such as sample groups and conditions, to perform statistical analysis. The MSstats output provides valuable information about differential protein expression across various conditions, estimates of fold changes, and associated p-values, which aids in the identification of biologically significant proteins. Furthermore, MSstats enables quality control and data visualization, enhancing our ability to draw meaningful conclusions from large-scale proteomic datasets and expands our understanding of complex biological processes. In this current workflow, we perform taxonomic and functional annotations using Unipept and statistical analysis using MSstatsTMT. 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2024-08-01\n\n### Added\n\n- Add bandage image\n- Add workflow report\n\n### Changed\n\n- Fix bug in merging assembly statistics\n\n## [0.1.8] 2024-07-22\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n\n## [0.1.7] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0`\n\n## [0.1.6] 2024-05-20\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.1.0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.2.0`\n\n\n## [0.1.5] 2024-04-23\n\n### Changed\n\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0`\n\n\n## [0.1.4] 2024-04-19\n\n### Manual Updates\n\n- Add Homozygous Read coverage parameter and calculation\n- Expose Lineage parameter\n\n### Automatic update\n\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- 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`toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3`\n- `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0` was 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  • Clinical Metaproteomics Data Interpretation
  • Clinical Metaproteomics Verification Workflow
  • Clinical Metaproteomics Quantitation
  • Generate a Clinical Metaproteomics Database
  • MetaProSIP OpenMS 2.8
  • Segmentation and counting of cell nuclei in fluorescence microscopy images
  • bacterial_genome_annotation
  • amr_gene_detection
  • Gene-based Pathogen Identification
  • Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation
  • Allele-based Pathogen Identification
  • Nanopore Preprocessing
  • Taxonomy Profiling and Visualization with Krona
  • Parallel Accession Download
  • sra_manifest_to_concatenated_fastqs_parallel
  • Differential gene expression for single-cell data using pseudo-bulk counts with edgeR
  • scRNA-seq_preprocessing_10X_cellPlex
  • scRNA-seq_preprocessing_10X_v3_Bundle
  • Velocyto-on10X-from-bundled
  • Velocyto-on10X-filtered-barcodes
  • baredSC_1d_logNorm
  • baredSC_2d_logNorm
  • COVID-19: variation analysis of ARTIC ONT data
  • SARS-CoV-2 Illumina Amplicon pipeline - iVar based
  • COVID-19: variation analysis on WGS SE data
  • COVID-19: variation analysis reporting
  • COVID-19: variation analysis on ARTIC PE data
  • COVID-19: consensus construction
  • COVID-19: variation analysis on WGS PE data
  • dcTMD calculations with GROMACS
  • Fragment-based virtual screening using rDock for docking and SuCOS for pose scoring
  • MMGBSA calculations with GROMACS
  • Create GRO and TOP complex files
  • Quality and Contamination Control For Genome Assembly
  • Assembly polishing with long reads
  • Bacterial Genome Assembly using Shovill
  • Genome assembly with Flye
  • Average Bigwig between replicates
  • Get Confident Peaks From ChIP_SR replicates
  • Get Confident Peaks From ChIP_PE replicates
  • Get Confident Peaks From ATAC or CUTandRUN replicates
  • ChIPseq_SR
  • ATACseq
  • CUTandRUN
  • ChIPseq_PE
  • Hi-C_fastqToCool_hicup_cooler
  • cHi-C_fastqToCool_hicup_cooler
  • Hi-C_juicermediumtabixToCool_cooler
  • Hi-C_fastqToPairs_hicup
  • RNA-seq for Single-read fastqs
  • Goseq GO-KEGG Enrichment Analysis
  • BREW3R
  • RNAseq_DE_filtering_plotting
  • RNA-seq for Paired-end fastqs
  • Pox Virus Illumina Amplicon Workflow from half-genomes
  • kmer-profiling-hifi-VGP1
  • Assembly-decontamination-VGP9
  • Purge-duplicate-contigs-VGP6
  • Purging-duplicates-one-haplotype-VGP6b
  • Scaffolding-BioNano-VGP7
  • kmer-profiling-hifi-trio-VGP2
  • Generate Nx and Size plots for multiple assemblies
  • Assembly-Hifi-HiC-phasing-VGP4
  • Assembly-Hifi-Trio-phasing-VGP5
  • Scaffolding with Hi-C data VGP8
  • Mitogenome-Assembly-VGP0
  • Assembly-Hifi-only-VGP3
  • Paired end variant calling in haploid system
  • Generic variation analysis on WGS PE data
  • Generic variation analysis reporting
  • dada2 amplicon analysis pipeline - for paired end data
  • QIIME2 IIa: Denoising (sequence quality control) and feature table creation (single-end)
  • QIIME2 IIb: Denoising (sequence quality control) and feature table creation (paired-end)
  • QIIME2 Ia: multiplexed data (single-end)
  • QIIME2 Ib: multiplexed data (paired-end)
  • QIIME2 Ic: Demultiplexed data (single-end)
  • QIIME2 Id: Demultiplexed data (paired-end)
  • QIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis
  • QIIME2 VI: Diversity metrics and estimations
  • Mass spectrometry: GCMS with metaMS
  • Mass spectrometry: LC-MS preprocessing with XCMS
  • Repeat masking with RepeatModeler and RepeatMasker

Clinical Metaproteomics Data Interpretation

This workflow will perform taxonomic and functional annotations using Unipept and statistical analysis using MSstatsTMT.

name:clinicalMP
Details

Clinical Metaproteomics Verification Workflow

In proteomics research, verifying detected peptides is essential for ensuring data accuracy and biological relevance. This tutorial continues from the clinical metaproteomics discovery workflow, focusing on verifying identified microbial peptides using the PepQuery tool.

name:clinicalMP
Details

Clinical Metaproteomics Quantitation

Clinical Metaproteomics 4: Quantitation

name:clinicalMP
Details

Generate a Clinical Metaproteomics Database

The workflow begins with the Database Generation process. The Galaxy-P team has developed a workflow that collects protein sequences from known disease-causing microorganisms to build a comprehensive database. This extensive database is then refined into a smaller, more relevant dataset using the Metanovo tool.

name:clinicalMP
Details

MetaProSIP OpenMS 2.8

Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics

Details

Segmentation and counting of cell nuclei in fluorescence microscopy images

This workflow performs segmentation and counting of cell nuclei using fluorescence microscopy images. The segmentation step is performed using Otsu thresholding (Otsu, 1979). The workflow is based on the tutorial: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/imaging-introduction/tutorial.html

Details

bacterial_genome_annotation

Annotation of an assembled bacterial genomes to detect genes, potential plasmids, integrons and Insertion sequence (IS) elements.

GenomicsfastaABRomicsbacterial-genomicsAnnotationgenome-annotation
Details

amr_gene_detection

Antimicrobial resistance gene detection from assembled bacterial genomes

fastaGenomicsABRomicsantibiotic-resistanceantimicrobial-resistance-genesantimicrobial resistancebacterial-genomicsAMRAMR-detection
Details

Gene-based Pathogen Identification

Nanopore datasets analysis - Phylogenetic Identification - antibiotic resistance genes detection and contigs building

name:Collectionname:PathoGFAIRname:IWCname:microGalaxy
Details

Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation

Pathogens of all samples report generation and visualization

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Allele-based Pathogen Identification

Microbiome - Variant calling and Consensus Building

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Nanopore Preprocessing

Microbiome - QC and Contamination Filtering

name:Collectionname:microGalaxyname:PathoGFAIRname:Nanoporename:IWC
Details

Taxonomy Profiling and Visualization with Krona

Microbiome - Taxonomy Profiling

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Parallel Accession Download

Downloads fastq files for sequencing run accessions provided in a text file using fasterq-dump. Creates one job per listed run accession.

Details

sra_manifest_to_concatenated_fastqs_parallel

This workflow takes as input a SRA_manifest from SRA Run Selector and will generate one fastq file or fastq pair of file for each experiment (concatenated multiple runs if necessary). Output will be relabelled to match the column specified by the user.

Details

Differential gene expression for single-cell data using pseudo-bulk counts with edgeR

This workflow uses the decoupler tool in Galaxy to generate pseudobulk counts from an annotated AnnData file obtained from scRNA-seq analysis. Following the pseudobulk step, differential expression genes (DEG) are calculated using the edgeR tool. The workflow also includes data sanitation steps to ensure smooth operation of edgeR and minimizing potential issues. Additionally, a Volcano plot tool is used to visualize the results after the DEG analysis.

Details

scRNA-seq_preprocessing_10X_cellPlex

This workflow processes the CMO fastqs with CITE-seq-Count and include the translation step required for cellPlex processing. In parallel it processes the Gene Expresion fastqs with STARsolo, filter cells with DropletUtils and reformat all outputs to be easily used by the function 'Read10X' from Seurat.

#single-cell
Details

scRNA-seq_preprocessing_10X_v3_Bundle

This workflow processes the Gene Expresion fastqs with STARsolo, filter cells with DropletUtils and reformat all outputs to be easily used by the function 'Read10X' from Seurat.

#single-cell
Details

Velocyto-on10X-from-bundled

Run velocyto to get loom with counts of spliced and unspliced. It will extract the 'barcodes' from the bundled outputs.

name:single-cell
Details

Velocyto-on10X-filtered-barcodes

Run velocyto to get loom with counts of spliced and unspliced

name:single-cell
Details

baredSC_1d_logNorm

Run baredSC in 1 dimension in logNorm for 1 to N gaussians and combine models.

Details

baredSC_2d_logNorm

Run baredSC in 2 dimensions in logNorm for 1 to N gaussians and combine models.

Details

COVID-19: variation analysis of ARTIC ONT data

This workflow for ONT-sequenced ARTIC data is modeled after the alignment/variant-calling steps of the [ARTIC pipeline](https://artic.readthedocs.io/en/latest/). It performs, essentially, the same steps as that pipeline’s minion command, i.e. read mapping with minimap2 and variant calling with medaka. Like the Illumina ARTIC workflow it uses ivar for primer trimming. Since ONT-sequenced reads have a much higher error rate than Illumina-sequenced reads and are therefor plagued more by false-positive variant calls, this workflow does make no attempt to handle amplicons affected by potential primer-binding site mutations.

COVID-19ARTICONTcovid19.galaxyproject.org
Details

SARS-CoV-2 Illumina Amplicon pipeline - iVar based

Find and annotate variants in ampliconic SARS-CoV-2 Illumina sequencing data and classify samples with pangolin and nextclade

COVID-19ARTICiwc
Details

COVID-19: variation analysis on WGS SE data

This workflows performs single end read mapping with bowtie2 followed by sensitive variant calling across a wide range of AFs with lofreq

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis reporting

This workflow takes a VCF dataset of variants produced by any of the *-variant-calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates tabular lists of variants by Samples and by Variant, and an overview plot of variants and their allele-frequencies.

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis on ARTIC PE data

The workflow for Illumina-sequenced ARTIC data builds on the RNASeq workflow for paired-end data using the same steps for mapping and variant calling, but adds extra logic for trimming ARTIC primer sequences off reads with the ivar package. In addition, this workflow uses ivar also to identify amplicons affected by ARTIC primer-binding site mutations and tries to exclude reads derived from such tainted amplicons when calculating allele-frequencies of other variants.

COVID-19ARTICcovid19.galaxyproject.org
Details

COVID-19: consensus construction

Build a consensus sequence from FILTER PASS variants with intrasample allele-frequency above a configurable consensus threshold. Hard-mask regions with low coverage (but not consensus variants within them) and ambiguous sites.

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis on WGS PE data

This workflows performs paired end read mapping with bwa-mem followed by sensitive variant calling across a wide range of AFs with lofreq

COVID-19covid19.galaxyproject.orgiwcemergen_validated
Details

dcTMD calculations with GROMACS

Perform dcTMD free energy simulations and calculations

Details

Fragment-based virtual screening using rDock for docking and SuCOS for pose scoring

Virtual screening of the SARS-CoV-2 main protease with rDock and pose scoring

Details

MMGBSA calculations with GROMACS

MMGBSA simulation and calculation

Details

Create GRO and TOP complex files

Quality and Contamination Control For Genome Assembly

Short paired-end read analysis to provide quality analysis, read cleaning and taxonomy assignation

Genomicsfastqbacterial-genomicstaxonomy-assignmentpaired-endqualityABRomicstrimming
Details

Assembly polishing with long reads

Racon polish with long reads, x4

Details

Bacterial Genome Assembly using Shovill

Assembly of bacterial paired-end short read data with generation of quality metrics and reports

fastqGenomicsbacterial-genomicspaired-endassemblyqualityABRomics
Details

Genome assembly with Flye

Assemble long reads with Flye, then view assembly statistics and assembly graph

Details

Average Bigwig between replicates

We assume the identifiers of the input list are like: sample_name_replicateID. @@ -52,7 +52,7 @@ sample_name

Details

Get Confident Peaks From ChIP_SR replicates

This workflow takes as input SR BAM from ChIP-seq. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using all subsets combined. Only peaks called using a combination of all subsets which have summits intersecting the intersection of at least x replicates will be kept.

ATAC-seq
Details

Get Confident Peaks From ChIP_PE replicates

This workflow takes as input PE BAM from ChIP-seq. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using all subsets combined. Only peaks called using a combination of all subsets which have summits intersecting the intersection of at least x replicates will be kept.

ATAC-seq
Details

Get Confident Peaks From ATAC or CUTandRUN replicates

This workflow takes as input BAM from ATAC-seq or CUT&amp;RUN. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using all subsets combined. Only peaks called using a combination of all subsets which have summits intersecting the intersection of at least x replicates will be kept.

ATAC-seq
Details

ChIPseq_SR

This workflow takes as input a collection of fastqs (single reads). Remove adapters with cutadapt, map with bowtie2. Keep MAPQ30. MACS2 for bam with fixed extension or model.

ChIP
Details

ATACseq

This workflow takes as input a collection of paired fastq. It will remove bad quality and adapters with cutadapt. Map with Bowtie2 end-to-end. Will remove reads on MT and unconcordant pairs and pairs with mapping quality below 30 and PCR duplicates. Will compute the pile-up on 5' +- 100bp. Will call peaks and count the number of reads falling in the 1kb region centered on the summit. Will compute 2 normalization for coverage: normalized by million reads and normalized by million reads in peaks. Will plot the number of reads for each fragment length.

ATACseq
Details

CUTandRUN

This workflow take as input a collection of paired fastq. Remove adapters with cutadapt, map pairs with bowtie2 allowing dovetail. Keep MAPQ30 and concordant pairs. BAM to BED. MACS2 with "ATAC" parameters.

CUTnRUN
Details

ChIPseq_PE

This workflow takes as input a collection of paired fastqs. Remove adapters with cutadapt, map pairs with bowtie2. Keep MAPQ30 and concordant pairs. MACS2 for paired bam.

ChIP
Details

Hi-C_fastqToCool_hicup_cooler

This workflow takes as input a collection of paired fastq. It uses HiCUP to go from fastq to validPair file using the middle of the fragment as coordinates. The pairs are filtered for MAPQ and sorted by cooler to generate a tabix dataset. Cooler is used to generate a balanced cool file to the desired resolution.

Hi-C
Details

cHi-C_fastqToCool_hicup_cooler

This workflow take as input a collection of paired fastq. It uses HiCUP to go from fastq to validPair file. The pairs are filtered for MAPQ and for the region captured. Then, they are sorted by cooler to generate a tabix dataset. Cooler is used to generate a balanced cool file to the desired resolution.

Hi-C
Details

Hi-C_juicermediumtabixToCool_cooler

This workflow uses as input a collection of juicer medium tabix files and a genome name. It builds balanced cool file to the desired resolution.

Hi-C
Details

Hi-C_fastqToPairs_hicup

This workflow takes as input a collection of paired fastq. It uses HiCUP to go from fastq to validPair file. First truncate the fastq using the cutting sequence to guess the fill-in. Then map the truncated fastq. Then asign to fragment and filter the self-ligated and dandling ends or internal (it can also filter for the size). Then it removes the duplicates. Convert the output to be compatible with juicebox or cooler using the middle of the fragment as coordinates. Finally filter for mapping quality

Hi-C
Details

RNA-seq for Single-read fastqs

This workflow takes as input a list of single-end fastqs. Adapters and bad quality bases are removed with fastp. Reads are mapped with STAR with ENCODE parameters and genes are counted simultaneously as well as normalized coverage (per million mapped reads) on uniquely mapped reads. The counts are reprocessed to be similar to HTSeq-count output. Alternatively, featureCounts can be used to count the reads/fragments per gene. FPKM are computed with cufflinks and/or with StringTie. The unstranded normalized coverage is computed with bedtools.

RNAseqtranscriptomics
Details

Goseq GO-KEGG Enrichment Analysis

This workflow is used for GO and KEGG enrichment analysis using GOseq tools.

Details

BREW3R

This workflow takes a collection of BAM (output of STAR) and a gtf. It extends the input gtf using de novo annotation.

Details

RNAseq_DE_filtering_plotting

This workflow can only work on an experimental setup with exactly 2 conditions. It takes two collections of count tables as input and performs differential expression analysis. Additionally it filters for DE genes based on adjusted p-value and log2 fold changes thresholds. It also generates informative plots.

transcriptomicsRNAseq
Details

RNA-seq for Paired-end fastqs

This workflow takes as input a list of paired-end fastqs. Adapters and bad quality bases are removed with fastp. Reads are mapped with STAR with ENCODE parameters and genes are counted simultaneously as well as normalized coverage (per million mapped reads) on uniquely mapped reads. The counts are reprocessed to be similar to HTSeq-count output. Alternatively, featureCounts can be used to count the reads/fragments per gene. FPKM are computed with cufflinks and/or with StringTie. The unstranded normalized coverage is computed with bedtools. -

RNAseqtranscriptomics
Details

Pox Virus Illumina Amplicon Workflow from half-genomes

A workflow for the analysis of pox virus genomes sequenced as half-genomes (for ITR resolution) in a tiled-amplicon approach

poxvirology
Details

kmer-profiling-hifi-VGP1

ReviewedVGP
Details

Assembly-decontamination-VGP9

VGP_curated
Details

Purge-duplicate-contigs-VGP6

Purge contigs marked as duplicates by purge_dups (could be haplotypic duplication or overlap duplication). This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps (Workflow 3, 4, or 5)

VGP_curated
Details

Purging-duplicates-one-haplotype-VGP6b

VGP_curated
Details

Scaffolding-BioNano-VGP7

VGP_curated
Details

kmer-profiling-hifi-trio-VGP2

Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.

ReviewedVGP
Details

Generate Nx and Size plots for multiple assemblies

Assembly-Hifi-HiC-phasing-VGP4

VGPReviewed
Details

Assembly-Hifi-Trio-phasing-VGP5

VGPReviewed
Details

Scaffolding with Hi-C data VGP8

Scaffolding using HiC data with YAHS.

VGP_curated
Details

Mitogenome-Assembly-VGP0

ReviewedVGP
Details

Assembly-Hifi-only-VGP3

VGPReviewed
Details

Paired end variant calling in haploid system

Workflow for variant analysis against a reference genome in GenBank format

genericVeuPathHaploid
Details

Generic variation analysis on WGS PE data

Workflow for variant analysis against a reference genome in GenBank format

mpxvgeneric
Details

Generic variation analysis reporting

This workflow takes a VCF dataset of variants produced by any of the variant calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates tabular lists of variants by Samples and by Variant, and an overview plot of variants and their allele-frequencies.

mpvxgeneric
Details

dada2 amplicon analysis pipeline - for paired end data

dada2 amplicon analysis for paired end data +

RNAseqtranscriptomics
Details

Pox Virus Illumina Amplicon Workflow from half-genomes

A workflow for the analysis of pox virus genomes sequenced as half-genomes (for ITR resolution) in a tiled-amplicon approach

poxvirology
Details

kmer-profiling-hifi-VGP1

ReviewedVGP
Details

Assembly-decontamination-VGP9

VGP_curated
Details

Purge-duplicate-contigs-VGP6

Purge contigs marked as duplicates by purge_dups (could be haplotypic duplication or overlap duplication). This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps (Workflow 3, 4, or 5)

VGP_curated
Details

Purging-duplicates-one-haplotype-VGP6b

VGP_curated
Details

Scaffolding-BioNano-VGP7

VGP_curated
Details

kmer-profiling-hifi-trio-VGP2

Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.

ReviewedVGP
Details

Generate Nx and Size plots for multiple assemblies

Assembly-Hifi-HiC-phasing-VGP4

VGPReviewed
Details

Assembly-Hifi-Trio-phasing-VGP5

VGPReviewed
Details

Scaffolding with Hi-C data VGP8

Scaffolding using HiC data with YAHS.

VGP_curated
Details

Mitogenome-Assembly-VGP0

ReviewedVGP
Details

Assembly-Hifi-only-VGP3

VGPReviewed
Details

Paired end variant calling in haploid system

Workflow for variant analysis against a reference genome in GenBank format

genericVeuPathHaploid
Details

Generic variation analysis on WGS PE data

Workflow for variant analysis against a reference genome in GenBank format

mpxvgeneric
Details

Generic variation analysis reporting

This workflow takes a VCF dataset of variants produced by any of the variant calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates tabular lists of variants by Samples and by Variant, and an overview plot of variants and their allele-frequencies.

mpvxgeneric
Details

dada2 amplicon analysis pipeline - for paired end data

dada2 amplicon analysis for paired end data The workflow has three main outputs: - the sequence table (output of makeSequenceTable) @@ -65,5 +65,5 @@ https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/gcms/tutorial.html

metabolomicsMSworkflow4metabolomicsGC-MSGTNmetaMS
Details

Mass spectrometry: LC-MS preprocessing with XCMS

This workflow is composed with the XCMS tool R package (Smith, C.A. 2006) able to extract, filter, align and fill gapand the possibility to annotate isotopes, adducts and fragments using the CAMERA R package (Kuhl, C 2012). -https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html

metabolomicsMSLC-MSworkflow4metabolomicsxcmsGTN
Details

Repeat masking with RepeatModeler and RepeatMasker

- \ No newline at end of file +https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html

metabolomicsMSLC-MSworkflow4metabolomicsxcmsGTN
Details

Repeat masking with RepeatModeler and RepeatMasker

+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json index dc677268d..058e7f107 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741643] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777485] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html index b5169c1a4..1bf11b330 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json index af1b6fb5e..ac3acfd94 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741647] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777491] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html index bc3c2b01a..2defa8893 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json index 15aaadfa1..f53b04b65 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741667] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777515] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html index 70d2fb1ba..514de6297 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json index 5c2e6aefe..1bb24a79e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741609] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777452] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html index 7921d58ee..088f6a9b5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json index e0d73fa2e..8b1e0da6f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741612] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777454] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html index 50c375c50..d25fb93b4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json index 230f4ff10..c0a07b2c0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741618] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777456] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html index ba4256cc3..720994d93 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json index 12899531d..eec1e44e1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741635] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777466] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html index 377e9576d..bedf1bd60 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json index 2fab4ca28..3175cd83f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741657] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777499] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html index 747046dac..419a46b58 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json index cdd1f1ee0..40ed453cd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741335] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777176] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html index acd35c6a0..22584e878 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json index dfc30dff7..1d82fd46d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741331] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777172] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html index 3ab9e5fc6..bb3d2e3f1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json index 378fe8e7c..54f8936a7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741519] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777358] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html index 70b005876..e289b5787 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json index 75659b04f..07f68d955 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741534] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777378] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html index 71a6352f7..0a102d2b5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json index 8e47eab3d..c258f6ee1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741521] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777360] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html index 172b41fc7..093e95344 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json index 75c92e5b9..844f7d527 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741511] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777355] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html index d5ffe3b7e..7c91b47d3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json index 4413ab4ff..c057688eb 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741330] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777171] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html index c479ee5ff..66ab667b4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json index 0527166e4..5a93dedf1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741433] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777271] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html index 070ee3c46..1726e67ed 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json index 0b847fcc0..04d99f898 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741435] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777273] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html index 051d5301d..a6155c2e1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json index 7a2735f26..84ef8e0c6 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741537] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777381] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html index 042dfcf02..88553fe76 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json index b2d9c3924..7e0e477fd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741680] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777526] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html index 91aec3160..a386d4995 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json index 1a07ab93f..6ace3e492 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741329] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777170] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html index f56349dba..a3d8c4f55 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json index ea85feab8..0831e6153 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741462] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777301] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html index a21393373..2c21931a0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json index a011f6614..5acc87e40 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741332] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777174] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html index 8685238c4..008553821 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json index 5e3c91d0d..74f3c471a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741671] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777518] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html index e38283642..8cb47b8dc 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json index 4efe5c721..4d2f77202 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741588] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777436] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html index 73a3b1f03..b5322b56d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json index 9e6506b6f..9d597d354 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741460] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777299] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html index c7a2a743f..31a510f28 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json index 7fbc67bc6..11ce90ab8 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741480] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777306] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html index 30ea307ca..69e7a12b9 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json index f7cc08ffc..7bd3a2c5e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741669] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777517] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html index 431a94e39..d59841522 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json index 6e655effd..e4ae4b6d7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741561] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777391] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html index 4d4ff6a8e..8c5c6fbef 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json index e73809aa1..41ca57709 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741551] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777385] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html index 1a6363648..aa3085fab 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json index a330ef975..4fd6c2972 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741583] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777422] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html index 7bba7fe3a..7e68e413b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json index cb36e4a9b..83dc56c27 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741563] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777401] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html index 83a3c1bcd..75c777ea1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json index 7f9ebfa6a..bf071ba26 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741607] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777446] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html index 5ca36a4e2..c3f98df0c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json index fc71a787d..fb2ec1742 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741638] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777469] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html index a0e151626..4404abeb8 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json index 6829dcb01..d697ec721 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741737] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777584] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html index 7b53173b6..3ea1a52c0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json index 950b6face..e987ac7ed 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741337] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777178] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html index e9a6eed25..9d13e2c76 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json index 6e3d752a6..b3afddf8f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741327] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777168] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html index 29899f234..660c1dc0e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json index d8c497166..1f79dc04b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741340] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777182] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html index feccc10ef..094997b1d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json index 53c517193..cba2d5e56 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741334] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777175] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html index 5995ddd67..a566b6611 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json index 55a6f7c65..1e96b3001 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741509] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777348] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html index 9c9f2df4d..5efa1bf75 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json index dcb5e7589..c18af676f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741605] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777444] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html index 010673f29..51461b360 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json index 29076f7c9..299fe4413 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741505] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777343] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html index beafafe4d..bb4a7dbce 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json index 57400eb9c..7bc994b9e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741343] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777186] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html index d92588c00..7e13646b8 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json index b7a8d8c08..872f992ff 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741699] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777532] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html index 6e5413e9f..7b2a84326 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json index 64809b918..14efce28f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741701] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777549] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html index 3c8a84768..cbe6d572e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json index e59a9298c..d2d35c13c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741703] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777553] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html index f6dd36de0..958803b79 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json index ee84ec186..6683caadd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741705] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777556] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html index e66b5df03..cd174383d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json index 7d8dc0e2c..b647c7a77 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741437] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777275] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html index 1c792af03..cb37a1b29 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json index 1a5919470..8a214cc8a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741452] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777297] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html index 5aa9d9db9..4f4495dcb 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json index 47b9b8894..659be893b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741441] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777285] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html index c6ba38eff..04a96f1e2 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json index 3109b58b1..cc0361b46 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741443] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777287] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html index 2b8c8546a..814532321 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json index 0cdd08e56..13b1725fd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741342] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777183] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html index d64680116..be5a9126d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json index 1fae0fc27..c6f168771 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741338] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777180] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html index 641001313..4cba8a9c1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json index 189828028..73ad057ec 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741679] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777520] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html index 1601e3d60..ff3c19b85 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json index fe9d53bf9..8bb8800e8 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741431] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777269] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html index 523834067..948a5993c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json index e0b8e373f..de042e755 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732965741429] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777266] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html index b80bacc38..18b9b73ad 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/workflow_manifest.json b/workflow_manifest.json index 5adfb2095..e35a865a9 100644 --- a/workflow_manifest.json +++ b/workflow_manifest.json @@ -88733,7 +88733,7 @@ ], "format-version": "0.1", "license": "CC-BY-4.0", - "release": "0.2.1", + "release": "0.2.2", "name": "Assembly-Hifi-only-VGP3", "report": { "markdown": "\n# Workflow Execution Report\n\nTime workflow was invoked:\n\n```galaxy\ninvocation_time()\n```\nGalaxy version :\n\n```galaxy\ngenerate_galaxy_version()\n```\n\n## Raw unitig graph\n\n```galaxy\nhistory_dataset_as_image(output=\"raw unitig graph image\")\n```\n\n## Merqury results\n\n### Merqury QV\n\n```galaxy\nhistory_dataset_as_table(output=\"merqury_qv\")\n```\n\n### Merqury completeness\n\n```galaxy\nhistory_dataset_as_table(output=\"merqury_stats\")\n```\n\n### Merqury plots\n\n\nspectra-cn:\n\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.spectra-cn.fl\")\n```\n\nspectra-asm:\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.spectra-asm.fl\")\n```\n\nhap1 spectra-cn:\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.assembly_01.spectra-cn.fl\")\n```\n\n\n## BUSCO results (Vertebrata database)\n\n\n\n## Assembly statistics\n\n\n```galaxy\nhistory_dataset_as_table(output=\"clean_stats\")\n```\n\n\n## Nx and Size plots\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Nx Plot\")\n```\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Size Plot\")\n```\n\n\n\n## Current Workflow\n```galaxy\nworkflow_display()\n```\n" @@ -89129,7 +89129,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -89182,7 +89182,7 @@ }, "14": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1", "errors": null, "id": 14, "input_connections": { @@ -89211,15 +89211,15 @@ "output_name": "out_file1" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1", "tool_shed_repository": { - "changeset_revision": "6595517c2dd8", + "changeset_revision": "aff5135563c6", "name": "column_maker", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"avoid_scientific_notation\": false, \"error_handling\": {\"auto_col_types\": true, \"fail_on_non_existent_columns\": true, \"non_computable\": {\"action\": \"--fail-on-non-computable\", \"__current_case__\": 0}}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"ops\": {\"header_lines_select\": \"no\", \"__current_case__\": 0, \"expressions\": [{\"__index__\": 0, \"cond\": \"c3*2\", \"add_column\": {\"mode\": \"\", \"__current_case__\": 0, \"pos\": \"\"}}]}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "2.0", + "tool_version": "2.1", "type": "tool", "uuid": "0203b86a-9457-48fc-87af-e251b24bad2b", "when": null, @@ -89227,7 +89227,7 @@ }, "15": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1", + "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0", "errors": null, "id": 15, "input_connections": { @@ -89240,13 +89240,13 @@ "label": null, "name": "MultiQC", "outputs": [ - { - "name": "stats", - "type": "input" - }, { "name": "html_report", "type": "html" + }, + { + "name": "stats", + "type": "tabular" } ], "position": { @@ -89254,15 +89254,15 @@ "top": 1052.86328125 }, "post_job_actions": {}, - "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1", + "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0", "tool_shed_repository": { - "changeset_revision": "abfd8a6544d7", + "changeset_revision": "f7e2f1eb3a16", "name": "multiqc", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"cutadapt\", \"__current_case__\": 5, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": false, \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "1.11+galaxy1", + "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"cutadapt\", \"__current_case__\": 5, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_version": "1.24.1+galaxy0", "type": "tool", "uuid": "24ef7e9a-d7eb-4cda-8675-26e8ea167b54", "when": null, @@ -89312,7 +89312,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -89756,7 +89756,7 @@ }, "25": { "annotation": "", - 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"tool_version": "2.0", + "tool_version": "2.1", "type": "tool", "uuid": "c93568ca-103f-4d8e-af88-d6de721e30cd", "when": null, @@ -90945,7 +90957,7 @@ } }, "tags": [], - "uuid": "dd05abfc-037d-43f6-8f1e-08e9aaa2e4e0" + "uuid": "8e50f47e-494e-44ae-af08-e31da30a873e" }, "tool_id": null, "type": "subworkflow", @@ -91082,7 +91094,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -91270,7 +91282,7 @@ }, "7": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1", "errors": null, "id": 7, "input_connections": { @@ -91305,15 +91317,15 @@ "output_name": "out_file1" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0", + "tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1", "tool_shed_repository": { - "changeset_revision": "6595517c2dd8", + "changeset_revision": "aff5135563c6", "name": "column_maker", "owner": "devteam", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"avoid_scientific_notation\": false, \"error_handling\": {\"auto_col_types\": true, \"fail_on_non_existent_columns\": true, \"non_computable\": {\"action\": \"--fail-on-non-computable\", \"__current_case__\": 0}}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"ops\": {\"header_lines_select\": \"no\", \"__current_case__\": 0, \"expressions\": [{\"__index__\": 0, \"cond\": {\"__class__\": \"ConnectedValue\"}, \"add_column\": {\"mode\": \"\", \"__current_case__\": 0, \"pos\": \"\"}}, {\"__index__\": 1, \"cond\": \"c2/1000000\", \"add_column\": {\"mode\": \"\", \"__current_case__\": 0, \"pos\": \"\"}}, {\"__index__\": 2, \"cond\": \"c3/1000000\", \"add_column\": {\"mode\": \"\", \"__current_case__\": 0, \"pos\": \"\"}}]}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "2.0", + "tool_version": "2.1", "type": "tool", "uuid": "c93568ca-103f-4d8e-af88-d6de721e30cd", "when": null, @@ -91327,7 +91339,7 @@ } }, "tags": [], - "uuid": "49338064-96ab-4998-9857-63df8cdc04a8" + "uuid": "f888dd45-2f79-45f9-83d6-dbe483be29a3" }, "tool_id": null, "type": "subworkflow", @@ -91909,7 +91921,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -92041,7 +92053,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1", "tool_shed_repository": { - "changeset_revision": "3b12bf9b4b87", + "changeset_revision": "5298e06f14f9", "name": "ggplot2_point", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -92101,7 +92113,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1", "tool_shed_repository": { - "changeset_revision": "3b12bf9b4b87", + "changeset_revision": "5298e06f14f9", "name": "ggplot2_point", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -92121,7 +92133,7 @@ } }, "tags": [], - "uuid": "0464fb43-deab-405b-bff8-f1f046ddec95" + "uuid": "b1acd066-69e6-4e5c-9b4e-9a7f5a2226e7" }, "tool_id": null, "type": "subworkflow", @@ -92142,7 +92154,7 @@ }, "46": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1", + "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy2", "errors": null, "id": 46, "input_connections": { @@ -92180,15 +92192,15 @@ "output_name": "output" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy2", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"complement\": \"--complement\", \"cut_type_options\": {\"cut_element\": \"-f\", \"__current_case__\": 0, \"delimiter\": \"\", \"colnames_option\": {\"header\": \"N\", \"__current_case__\": 1, \"list\": [\"3\"]}}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "9.3+galaxy1", + "tool_version": "9.3+galaxy2", "type": "tool", "uuid": "3470d58d-da54-43ef-842c-acfee1b35a56", "when": null, @@ -92233,7 +92245,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -92256,11 +92268,11 @@ "VGP", "Reviewed" ], - "uuid": "2988562a-fa7a-4135-bf67-943ab03d1517", - "version": 1 + "uuid": "89098802-f961-4589-894b-79eaf996755b", + "version": 3 }, "readme": "## Contiging Solo:\n\nGenerate assembly based on PacBio Hifi Reads.\n\n\n### Inputs\n\n\n1. Hifi long reads [fastq]\n2. K-mer database [meryldb]\n3. Genome profile summary generated by Genomescope [txt]\n4. Homozygous Read Coverage. Optional, use if you think the estimation from Genomescope is inacurate. \n5. Genomescope Model Parameters generated by Genomescope [tabular]\n6. Database for busco lineage (recommended: latest)\n7. Busco lineage (recommended: vertebrata)\n8. Name of first assembly\n9. Name of second assembly\n\n\n### Outputs\n\n1. Primary assembly\n2. Alternate assembly\n3. QC: Bandage image for the raw unitigs\n4. QC: BUSCO report for both assemblies\n5. QC: Merqury report for both assemblies\n6. QC: Assembly statistics for both assemblies\n7. QC: Nx plot for both assemblies\n8. QC: Size plot for both assemblie\n", - "changelog": "# Changelog\n\n## [0.2.1] 2024-08-13\n\n- Expose Busco lineage database parameter\n\n## [0.2] 2024-08-01\n\n### Added\n\n- Add bandage image\n- Add workflow report\n\n### Changed\n\n- Fix bug in merging assembly statistics\n\n## [0.1.8] 2024-07-22\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n\n## [0.1.7] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0`\n\n## [0.1.6] 2024-05-20\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.1.0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.2.0`\n\n\n## [0.1.5] 2024-04-23\n\n### Changed\n\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0`\n\n\n## [0.1.4] 2024-04-19\n\n### Manual Updates\n\n- Add Homozygous Read coverage parameter and calculation\n- Expose Lineage parameter\n\n### Automatic update\n\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy4`\n\n## [0.1.3] 2024-03-25\n\n### Manual Updates\n- Add Gff outputs to Busco\n- Add histogram outputs to Merqury\n- Add labels to subworkflows\n\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1`\n\n\n## [0.1.2] 2023-11-14\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3`\n- `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1`\n\n\n## [0.1.1] 2023-11-20\n\n- Fix author in dockstore\n\n## [0.1] - 2023-09-26\n\nAddition of the workflow to the iwc repository.\n", + "changelog": "# Changelog\n\n## [0.2.2] 2024-10-14\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.5.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.7.1+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy2`\n\n## [0.2.1] 2024-08-13\n\n- Expose Busco lineage database parameter\n\n## [0.2] 2024-08-01\n\n### Added\n\n- Add bandage image\n- Add workflow report\n\n### Changed\n\n- Fix bug in merging assembly statistics\n\n## [0.1.8] 2024-07-22\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n\n## [0.1.7] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0`\n\n## [0.1.6] 2024-05-20\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.1.0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.2.0`\n\n\n## [0.1.5] 2024-04-23\n\n### Changed\n\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0`\n\n\n## [0.1.4] 2024-04-19\n\n### Manual Updates\n\n- Add Homozygous Read coverage parameter and calculation\n- Expose Lineage parameter\n\n### Automatic update\n\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy4`\n\n## [0.1.3] 2024-03-25\n\n### Manual Updates\n- Add Gff outputs to Busco\n- Add histogram outputs to Merqury\n- Add labels to subworkflows\n\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1`\n\n\n## [0.1.2] 2023-11-14\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3`\n- `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1`\n\n\n## [0.1.1] 2023-11-20\n\n- Fix author in dockstore\n\n## [0.1] - 2023-09-26\n\nAddition of the workflow to the iwc repository.\n", "trsID": "#workflow/github.com/iwc-workflows/Assembly-Hifi-only-VGP3/main", "tests": [ { @@ -92338,6 +92350,13 @@ } } }, + "Busco Summary": { + "asserts": { + "has_text": { + "text": "C:1.2%[S:1.2%,D:0.0%],F:0.4%,M:98.4%,n:3354" + } + } + }, "Nx Plot": { "asserts": { "has_size": {