diff --git a/workflows/genome-assembly/quality-and-contamination-control/CHANGELOG.md b/workflows/genome-assembly/quality-and-contamination-control/CHANGELOG.md index 32308d163..084ba4010 100644 --- a/workflows/genome-assembly/quality-and-contamination-control/CHANGELOG.md +++ b/workflows/genome-assembly/quality-and-contamination-control/CHANGELOG.md @@ -1,5 +1,10 @@ # Changelog +## [1.1.6] 2024-11-18 + +### Automatic update +- `toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy3` + ## [1.1.5] 2024-10-21 ### Automatic update diff --git a/workflows/genome-assembly/quality-and-contamination-control/quality_and_contamination_control.ga b/workflows/genome-assembly/quality-and-contamination-control/quality_and_contamination_control.ga index bd99860f4..4fceeb71e 100644 --- a/workflows/genome-assembly/quality-and-contamination-control/quality_and_contamination_control.ga +++ b/workflows/genome-assembly/quality-and-contamination-control/quality_and_contamination_control.ga @@ -27,7 +27,7 @@ ], "format-version": "0.1", "license": "GPL-3.0-or-later", - "release": "1.1.5", + "release": "1.1.6", "name": "Quality and Contamination Control For Genome Assembly", "steps": { "0": { @@ -152,7 +152,7 @@ }, "4": { "annotation": "fastp_triming, quality analaysis and read cleaning", - "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy2", + "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy3", "errors": null, "id": 4, "input_connections": { @@ -180,11 +180,11 @@ "outputs": [ { "name": "out1", - "type": "auto" + "type": "input" }, { "name": "out2", - "type": "auto" + "type": "input" }, { "name": "report_html", @@ -271,15 +271,15 @@ "output_name": "report_json" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy2", + "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.24.0+galaxy3", "tool_shed_repository": { - "changeset_revision": "dbfc505896e9", + "changeset_revision": "a626e8c0e1ba", "name": "fastp", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"filter_options\": {\"quality_filtering_options\": {\"disable_quality_filtering\": false, \"qualified_quality_phred\": null, \"unqualified_percent_limit\": null, \"n_base_limit\": null}, \"length_filtering_options\": {\"disable_length_filtering\": false, \"length_required\": null, \"length_limit\": null}, \"low_complexity_filter\": {\"enable_low_complexity_filter\": false, \"complexity_threshold\": null}}, \"output_options\": {\"report_html\": true, \"report_json\": true}, \"overrepresented_sequence_analysis\": {\"overrepresentation_analysis\": false, \"overrepresentation_sampling\": null}, \"read_mod_options\": {\"polyg_tail_trimming\": {\"trimming_select\": \"\", \"__current_case__\": 1, \"poly_g_min_len\": null}, \"polyx_tail_trimming\": {\"polyx_trimming_select\": \"\", \"__current_case__\": 1}, \"umi_processing\": {\"umi\": false, \"umi_loc\": null, \"umi_len\": null, \"umi_prefix\": null}, \"cutting_by_quality_options\": {\"cut_by_quality5\": false, \"cut_by_quality3\": false, \"cut_window_size\": null, \"cut_mean_quality\": null}, \"base_correction_options\": {\"correction\": false}}, \"single_paired\": {\"single_paired_selector\": \"paired\", \"__current_case__\": 1, \"in1\": {\"__class__\": \"ConnectedValue\"}, \"in2\": {\"__class__\": \"ConnectedValue\"}, \"merge_reads\": {\"merge\": \"\", \"__current_case__\": 1}, \"adapter_trimming_options\": {\"disable_adapter_trimming\": false, \"adapter_sequence1\": null, \"adapter_sequence2\": null, \"detect_adapter_for_pe\": false}, \"global_trimming_options\": {\"trim_front1\": null, \"trim_tail1\": null, \"trim_front2\": null, \"trim_tail2\": null}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "0.23.4+galaxy2", + "tool_version": "0.24.0+galaxy3", "type": "tool", "uuid": "7f405009-2491-4633-b4e1-ca0fdbd8360d", "when": null,