From 8cc3c63311a50f62fb834b1aedfc3aff60ddeae7 Mon Sep 17 00:00:00 2001
From: planemo-autoupdate <planemo-autoupdate@users.noreply.github.com>
Date: Mon, 23 Dec 2024 04:48:33 +0000
Subject: [PATCH] Updating workflows/bacterial_genomics/amr_gene_detection from
 1.1.5 to 1.1.6

---
 .../bacterial_genomics/amr_gene_detection/CHANGELOG.md |  5 +++++
 .../amr_gene_detection/amr_gene_detection.ga           | 10 +++++-----
 2 files changed, 10 insertions(+), 5 deletions(-)

diff --git a/workflows/bacterial_genomics/amr_gene_detection/CHANGELOG.md b/workflows/bacterial_genomics/amr_gene_detection/CHANGELOG.md
index a4aed27d7..64dda03a1 100644
--- a/workflows/bacterial_genomics/amr_gene_detection/CHANGELOG.md
+++ b/workflows/bacterial_genomics/amr_gene_detection/CHANGELOG.md
@@ -1,5 +1,10 @@
 # Changelog
 
+## [1.1.6] 2024-12-23
+
+### Automatic update
+- `toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0`
+
 ## [1.1.5] 2024-10-21
 
 ### Automatic update
diff --git a/workflows/bacterial_genomics/amr_gene_detection/amr_gene_detection.ga b/workflows/bacterial_genomics/amr_gene_detection/amr_gene_detection.ga
index c485704cf..46e2ee6f6 100644
--- a/workflows/bacterial_genomics/amr_gene_detection/amr_gene_detection.ga
+++ b/workflows/bacterial_genomics/amr_gene_detection/amr_gene_detection.ga
@@ -27,7 +27,7 @@
     ],
     "format-version": "0.1",
     "license": "GPL-3.0-or-later",
-    "release": "1.1.5",
+    "release": "1.1.6",
     "name": "amr_gene_detection",
     "steps": {
         "0": {
@@ -140,7 +140,7 @@
         },
         "4": {
             "annotation": "staramr_amr_genes",
-            "content_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1",
+            "content_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0",
             "errors": null,
             "id": 4,
             "input_connections": {
@@ -304,15 +304,15 @@
                     "output_name": "summary"
                 }
             },
-            "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1",
+            "tool_id": "toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.11.0+galaxy0",
             "tool_shed_repository": {
-                "changeset_revision": "3b22de20bd4b",
+                "changeset_revision": "3548a93b39c1",
                 "name": "staramr",
                 "owner": "nml",
                 "tool_shed": "toolshed.g2.bx.psu.edu"
             },
             "tool_state": "{\"advanced\": {\"pid_threshold\": \"90.0\", \"plength_resfinder\": \"60.0\", \"plength_pointfinder\": \"95.0\", \"plength_plasmidfinder\": \"60.0\", \"genome_size_lower_bound\": \"4000000\", \"genome_size_upper_bound\": \"6000000\", \"minimum_N50_value\": \"10000\", \"minimum_contig_length\": \"300\", \"unacceptable_number_contigs\": \"1000\", \"report_all_blast\": false, \"exclude_negatives\": false, \"exclude_resistance_phenotypes\": false, \"mlst_scheme\": \"auto\", \"exclude_genes\": {\"exclude_genes_condition\": \"default\", \"__current_case__\": 0}, \"complex_mutations\": {\"complex_mutations_condition\": \"default\", \"__current_case__\": 0}, \"plasmidfinder_type\": \"include_all\"}, \"genomes\": {\"__class__\": \"ConnectedValue\"}, \"pointfinder_db\": {\"use_pointfinder\": \"disabled\", \"__current_case__\": 0}, \"__page__\": null, \"__rerun_remap_job_id__\": null}",
-            "tool_version": "0.10.0+galaxy1",
+            "tool_version": "0.11.0+galaxy0",
             "type": "tool",
             "uuid": "10eed503-9e5b-4acf-8cd8-29e81d7668a5",
             "when": null,