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(64%) rename _nuxt/{BE5jgTkI.js => C_EH858F.js} (79%) rename _nuxt/{Oyapntkl.js => Ci7eaOln.js} (97%) rename _nuxt/{DlFKRhuC.js => CkvKG46v.js} (80%) rename _nuxt/{WloyxQLA.js => CoVjAYz1.js} (64%) rename _nuxt/{BCxHAuNQ.js => D4nRDJWs.js} (97%) rename _nuxt/{BVAFXz3w.js => D4xIFz_M.js} (63%) rename _nuxt/{CY2VuqgR.js => D5tibtq5.js} (63%) delete mode 100644 _nuxt/D6VVh6U6.js rename _nuxt/{BEWi2GCC.js => DBCpI6F1.js} (98%) rename _nuxt/{B-8On8ec.js => DHotrib-.js} (74%) rename _nuxt/{BxwEN4eD.js => DV5tU4XN.js} (53%) create mode 100644 _nuxt/DW6I7joz.js rename _nuxt/{BOWpLLr4.js => Dao-CjYI.js} (58%) rename _nuxt/{C-W-wDfH.js => DbK4uoPL.js} (85%) rename _nuxt/{BYXx80ii.js => Dg_5X29J.js} (82%) rename _nuxt/{CW9h6Nit.js => DxgzO2ct.js} (97%) rename _nuxt/{DBEnGhqn.js => JQJhzE4A.js} (64%) rename _nuxt/{BJbDnlLZ.js => JnwCNKqH.js} (99%) rename _nuxt/{DFWB3ETx.js => SvkDkXZE.js} (84%) create mode 100644 _nuxt/builds/meta/358815ca-72bb-4559-abaa-f39f8db76275.json delete mode 100644 _nuxt/builds/meta/96c19edd-71d4-43af-9c0c-16a66a2d0964.json rename _nuxt/{OAJbJE9n.js => racOWMwc.js} (92%) rename _nuxt/{W92VzFpL.js => sluKuymn.js} (86%) rename _nuxt/{D-u-Q0ML.js => wvyi0qd9.js} (65%) delete mode 100644 api/_content/cache.1732295559589.json create mode 100644 api/_content/cache.1732520070138.json diff --git a/200.html b/200.html index 18594de16..c62f8b8b4 100644 --- a/200.html +++ b/200.html @@ -3,9 +3,9 @@ - - - - -
- \ No newline at end of file + + + + +
+ \ No newline at end of file diff --git a/404.html b/404.html index 18594de16..c62f8b8b4 100644 --- a/404.html +++ b/404.html @@ -3,9 +3,9 @@ - - - - -
- \ No newline at end of file + + + + +
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default}; +import{_ as r,o,c as t,r as s}from"./B5iSH5Mq.js";const c={};function n(e,a){return o(),t("th",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/Bqy0JBNy.js b/_nuxt/9xtcrgRk.js similarity index 63% rename from _nuxt/Bqy0JBNy.js rename to _nuxt/9xtcrgRk.js index 83d7b5aad..f95d4f6fb 100644 --- a/_nuxt/Bqy0JBNy.js +++ b/_nuxt/9xtcrgRk.js @@ -1 +1 @@ -import{_ as r,o,c as s,r as t}from"./BHq-Kz8I.js";const c={};function n(e,a){return o(),s("p",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as s,r as t}from"./B5iSH5Mq.js";const c={};function n(e,a){return o(),s("p",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/BHq-Kz8I.js b/_nuxt/B5iSH5Mq.js similarity index 98% rename from _nuxt/BHq-Kz8I.js rename to _nuxt/B5iSH5Mq.js index 18cf324b9..c054606d2 100644 --- a/_nuxt/BHq-Kz8I.js +++ b/_nuxt/B5iSH5Mq.js @@ -1,4 +1,4 @@ -const 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b/_nuxt/BFkcwiTa.js @@ -1 +1 @@ -import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./BHq-Kz8I.js";const f=["id"],l=["href"],k=i({__name:"ProseH2",props:{id:{}},setup(r){const a=r,{headings:o}=c().public.mdc,d=p(()=>{var e;return a.id&&((e=o==null?void 0:o.anchorLinks)==null?void 0:e.h2)});return(e,m)=>(s(),n("h2",{id:e.id},[e.id&&u(d)?(s(),n("a",{key:0,href:`#${e.id}`},[t(e.$slots,"default")],8,l)):t(e.$slots,"default",{key:1})],8,f))}});export{k as default}; +import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./B5iSH5Mq.js";const f=["id"],l=["href"],k=i({__name:"ProseH2",props:{id:{}},setup(r){const a=r,{headings:o}=c().public.mdc,d=p(()=>{var e;return a.id&&((e=o==null?void 0:o.anchorLinks)==null?void 0:e.h2)});return(e,m)=>(s(),n("h2",{id:e.id},[e.id&&u(d)?(s(),n("a",{key:0,href:`#${e.id}`},[t(e.$slots,"default")],8,l)):t(e.$slots,"default",{key:1})],8,f))}});export{k as default}; diff --git a/_nuxt/WdirsWIK.js b/_nuxt/BKsSf_ZU.js similarity index 78% rename 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"__rerun_remap_job_id__": null}',tool_version:"2.1.4",type:"tool",uuid:"d76c6369-3878-45de-9b28-45ae510ba481",when:null,workflow_outputs:[{label:"Quantified-Proteins",output_name:"out_file1",uuid:"57a2ff00-7ad2-4fbb-aafb-6b8323bd23c3"}]},9:{annotation:"Quantified-Peptides",content_id:"Grouping1",errors:null,id:9,input_connections:{input1:{id:7,output_name:"out_file1"}},inputs:[],label:"Quantified-Peptides",name:"Group",outputs:[{name:"out_file1",type:"tabular"}],position:{left:1213.8046875,top:342.296875},post_job_actions:{RenameDatasetActionout_file1:{action_arguments:{newname:"Quantified-Peptides"},action_type:"RenameDatasetAction",output_name:"out_file1"}},tool_id:"Grouping1",tool_state:'{"__input_ext": "tabular", "chromInfo": "/opt/galaxy/tool-data/shared/ucsc/chrom/?.len", "groupcol": "1", "ignorecase": false, "ignorelines": null, "input1": {"__class__": "ConnectedValue"}, "operations": [], "__page__": null, "__rerun_remap_job_id__": null}',tool_version:"2.1.4",type:"tool",uuid:"019fe847-4fb9-441f-9450-505f855434e7",when:null,workflow_outputs:[{label:"Quantified-Peptides",output_name:"out_file1",uuid:"41b20ef9-acef-4b1d-9a93-1df0c1447a03"}]}},tags:["name:clinicalMP"],uuid:"e21d954c-bb46-46f3-8081-0095b6b0de1f",version:1},readme:`# Clinical Metaproteomics 4: Quantitation Quantitative proteomics is crucial for many important purposes. It allows researchers to measure and compare the levels of proteins or peptides in biological samples. This provides valuable insights into biomarker discovery, comparative analysis, and differential expression studies. Quantitative proteomics also helps in understanding the functional roles of proteins, the composition of protein complexes, and the effects of drugs on protein expression in pharmacological studies. Additionally, it serves as a quality control measure by validating initial protein identifications and providing data normalization for increased accuracy. The quantitative data are essential for hypothesis testing, and systems biology, and have clinical relevance in areas such as disease diagnosis, prognosis, and therapeutic decision-making. In summary, the quantitation workflow in proteomics is essential for understanding the complexities of protein expression and regulation, and it facilitates a wide range of biological and clinical applications. @@ -2918,7 +2918,7 @@ Fix dockstore (workflows are the same) First release. `,trsID:"#workflow/github.com/iwc-workflows/hic-hicup-cooler/hic-fastq-to-pairs-hicup",tests:[{doc:"Test outline for Hi-C_fastqToPairs_hicup",job:{"PE fastq input":{class:"Collection",collection_type:"list:paired",elements:[{class:"Collection",type:"paired",identifier:"test_dataset",elements:[{class:"File",identifier:"forward",location:"https://github.com/bgruening/galaxytools/raw/master/tools/hicup/test-data/dataset1.fastq",filetype:"fastqsanger"},{class:"File",identifier:"reverse",location:"https://github.com/bgruening/galaxytools/raw/master/tools/hicup/test-data/dataset2.fastq",filetype:"fastqsanger"}]}]},"genome name":"hg19","Restriction enzyme":"A^AGCTT,HindIII","No fill-in":"false","minimum MAPQ":30},outputs:{"HiCUP report (HTML)":{element_tests:{test_dataset:{asserts:{has_size:{value:4602173,delta:4e6}}}}},"HiCUP report (tabular)":{element_tests:{test_dataset:{asserts:{has_text:{text:" 99742 99742 92512 92628 7230 7114 22.45 22.63 2658 2476 73431 72142 17767 18475 5886 6649 57671 57671 39966 1652 17997 20317 17705 481 2432 13452 1340 0 0 39962 1652 17996 20314 57.82 69.30 99.99 50.83 40.07"}}}}},"valid pairs in juicebox format":{element_tests:{test_dataset:{asserts:[{that:"has_line",line:"1 1 chr10 100023987 28055 1 chr10 101500419 28474 42 42"},{that:"has_line",line:"2 1 chr10 100091500 28079 1 chr10 122245984 34516 38 42"},{that:"has_line",line:"3 0 chr10 100127492 28094 1 chr10 50864290 13489 0 42"}]}}},"valid pairs in juicebox format MAPQ filtered":{element_tests:{test_dataset:{asserts:[{that:"has_line",line:"1 1 chr10 100023987 28055 1 chr10 101500419 28474 42 42"},{that:"has_line",line:"2 1 chr10 100091500 28079 1 chr10 122245984 34516 38 42"},{that:"not_has_text",text:"3 0 chr10 100127492 28094 1 chr10 50864290 13489 0 42"}]}}}}}]}],path:"./workflows/epigenetics/hic-hicup-cooler"},{version:1.2,workflows:[{name:"main",subclass:"Galaxy",publish:!0,primaryDescriptorPath:"/rnaseq-sr.ga",testParameterFiles:["/rnaseq-sr-tests.yml"],authors:[{name:"Lucille Delisle",orcid:"0000-0002-1964-4960"},{name:"Pavankumar Videm",orcid:"0000-0002-5192-126X"}],definition:{a_galaxy_workflow:"true",annotation:`This workflow takes as input a list of single-end fastqs. 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dataset\n- Using a new subsampled Yeast test data from Zenodo record https://zenodo.org/records/13987631\n\n## [0.9] 2024-09-23\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0`\n\n## [0.8] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n\n## [0.7] 2024-06-25\n\n### Automatic update (triggered manually)\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.6+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy2`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.31.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.2.1+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.2.3+galaxy0`\n\n## [0.6] 2024-02-05\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.6+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.2.0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.10b+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy0`\n\n## [0.5] 2023-09-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.10b+galaxy4`\n\n### Manual update\n- Use STAR to compute normalized strand-specific coverage\n- Add an option to use StringTie to compute FPKM\n- Make cufflinks step optional\n\n## [0.4.1] 2023-09-14\n- add author in dockstore file\n\n## [0.4] 2023-01-16\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1`\n\n## [0.3] 2022-12-17\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1`\n\n## [0.2] 2022-11-02\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1`\n\n## [0.1] 2022-10-12\n\nFirst release.\n",trsID:"#workflow/github.com/iwc-workflows/rnaseq-sr/main",tests:[{doc:"Test outline for RNAseq_SR",job:{"GTF file of annotation":{class:"File",location:"https://zenodo.org/records/13987631/files/Saccharomyces_cerevisiae.R64-1-1.113.gtf",filetype:"gtf"},"Collection of FASTQ files":{class:"Collection",collection_type:"list",elements:[{class:"File",identifier:"SRR5085167",location:"https://zenodo.org/records/13987631/files/SRR5085167_forward.fastqsanger.gz"}]},"Forward adapter":"AGATCGGAAGAG","Generate additional QC reports":!0,"Reference genome":"sacCer3",Strandedness:"stranded - forward","Use featureCounts for generating count tables":!0,"Compute Cufflinks FPKM":!0,"GTF with regions to exclude from FPKM normalization with Cufflinks":null,"Compute StringTie FPKM":!0},outputs:{"MultiQC stats":{asserts:{has_text_matching:{expression:"SRR5085167 0.11[0-9]* 18.3[0-9]* 69.6[0-9]* 0.3[0-9]* 0.3[0-9]* 94.62 0.12[0-9]* 34.43 0.2[0-9]* 28.[0-9]* 90.[0-9]* 16.[0-9]* 0.36[0-9]* 43.[0-9]* 91.[0-9]* 70.[0-9]* 36.[0-9]* 46.0 75.0 75 27.27[0-9]* 0.39[0-9]*"}}},"Counts Table":{element_tests:{SRR5085167:{asserts:{has_line:{line:"YAL038W 1775"}}}}},"Mapped Reads":{element_tests:{SRR5085167:{asserts:{has_size:{value:31570787,delta:3e6}}}}},"Gene Abundance Estimates from StringTie":{element_tests:{SRR5085167:{asserts:{has_text_matching:{expression:"YAL038W CDC19 chrI \\+ 71786 73288 57.[0-9]* 3575.[0-9]* 3084.[0-9]*"}}}}},"Genes Expression from Cufflinks":{element_tests:{SRR5085167:{asserts:{has_line:{line:"YAL038W - - YAL038W CDC19 - chrI:71785-73288 - - 3375.85 3161.36 3590.33 OK"}}}}},"Transcripts Expression from Cufflinks":{element_tests:{SRR5085167:{asserts:{has_line:{line:"YAL038W_mRNA - - YAL038W CDC19 - chrI:71785-73288 1503 57.5601 3375.85 3161.36 3590.33 OK"}}}}},"Stranded Coverage":{element_tests:{SRR5085167_forward:{asserts:{has_size:{value:555489,delta:5e4}}},SRR5085167_reverse:{asserts:{has_size:{value:526952,delta:5e4}}}}},"Unstranded 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dataset",outputs:[],position:{left:337.51186934168175,top:496.3229330319098},tool_id:null,tool_state:'{"optional": false, "format": ["tabular"], "tag": null}',tool_version:null,type:"data_input",uuid:"52bf21e0-e1d7-41dd-87c2-ba4808a77b5d",when:null,workflow_outputs:[]},2:{annotation:"Select the format of your genes",content_id:null,errors:null,id:2,input_connections:{},inputs:[{description:"Select the format of your genes",name:"Select gene ID format"}],label:"Select gene ID format",name:"Input parameter",outputs:[],position:{left:0,top:603.4685835542876},tool_id:null,tool_state:'{"restrictOnConnections": true, "parameter_type": "text", "optional": false}',tool_version:null,type:"parameter_input",uuid:"03c15189-4a0c-44fa-b4bc-717db6650797",when:null,workflow_outputs:[{label:null,output_name:"output",uuid:"61021ac9-ae04-486a-bb69-583314324551"}]},3:{annotation:"input2: table with two columns. 1 gene 2 gene length",content_id:null,errors:null,id:3,input_connections:{},inputs:[{description:"input2: table with two columns. 1 gene 2 gene length",name:"gene length"}],label:"gene length",name:"Input dataset",outputs:[],position:{left:346.07461300595065,top:583.8602444483994},tool_id:null,tool_state:'{"optional": false, "format": ["tabular"], "tag": null}',tool_version:null,type:"data_input",uuid:"def1d40a-71dc-4c0b-bd8d-cb0cd00b1ffa",when:null,workflow_outputs:[]},4:{annotation:`a table with two columns: +`,changelog:"# Changelog\n\n## [1.1] 2024-11-25\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.6+galaxy0`\n\n## [1.0] 2024-10-22\n\n### Changes in workflows\n- Add an optional subworkflow with more QC: FastQC, Picard, Read distribution on genomic features, gene body coverage, reads per chromosomes.\n- Add featureCounts as an alternative way to generate count files\n- Use fastp instead of cutadapt which uses pair overlap and allows to have optional adapter sequences\n\n### Tool update\n- `toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.3` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.4`\n\n### Test dataset\n- Using a new subsampled Yeast test data from Zenodo record https://zenodo.org/records/13987631\n\n## [0.9] 2024-09-23\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0`\n\n## [0.8] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n\n## [0.7] 2024-06-25\n\n### Automatic update (triggered manually)\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.6+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy2`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.31.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.2.1+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.2.3+galaxy0`\n\n## [0.6] 2024-02-05\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.6+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.2.0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.10b+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy0`\n\n## [0.5] 2023-09-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.10b+galaxy4`\n\n### Manual update\n- Use STAR to compute normalized strand-specific coverage\n- Add an option to use StringTie to compute FPKM\n- Make cufflinks step optional\n\n## [0.4.1] 2023-09-14\n- add author in dockstore file\n\n## [0.4] 2023-01-16\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1`\n\n## [0.3] 2022-12-17\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1`\n\n## [0.2] 2022-11-02\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1`\n\n## [0.1] 2022-10-12\n\nFirst release.\n",trsID:"#workflow/github.com/iwc-workflows/rnaseq-sr/main",tests:[{doc:"Test outline for RNAseq_SR",job:{"GTF file of annotation":{class:"File",location:"https://zenodo.org/records/13987631/files/Saccharomyces_cerevisiae.R64-1-1.113.gtf",filetype:"gtf"},"Collection of FASTQ files":{class:"Collection",collection_type:"list",elements:[{class:"File",identifier:"SRR5085167",location:"https://zenodo.org/records/13987631/files/SRR5085167_forward.fastqsanger.gz"}]},"Forward adapter":"AGATCGGAAGAG","Generate additional QC reports":!0,"Reference genome":"sacCer3",Strandedness:"stranded - forward","Use featureCounts for generating count tables":!0,"Compute Cufflinks FPKM":!0,"GTF with regions to exclude from FPKM normalization with Cufflinks":null,"Compute StringTie FPKM":!0},outputs:{"MultiQC stats":{asserts:{has_text_matching:{expression:"SRR5085167 0.11[0-9]* 18.3[0-9]* 69.6[0-9]* 0.3[0-9]* 0.3[0-9]* 94.62 0.12[0-9]* 34.43 0.2[0-9]* 28.[0-9]* 90.[0-9]* 16.[0-9]* 0.36[0-9]* 43.[0-9]* 91.[0-9]* 70.[0-9]* 36.[0-9]* 46.0 75.0 75 27.27[0-9]* 0.39[0-9]*"}}},"Counts Table":{element_tests:{SRR5085167:{asserts:{has_line:{line:"YAL038W 1775"}}}}},"Mapped Reads":{element_tests:{SRR5085167:{asserts:{has_size:{value:31570787,delta:3e6}}}}},"Gene Abundance Estimates from StringTie":{element_tests:{SRR5085167:{asserts:{has_text_matching:{expression:"YAL038W CDC19 chrI \\+ 71786 73288 57.[0-9]* 3575.[0-9]* 3084.[0-9]*"}}}}},"Genes Expression from Cufflinks":{element_tests:{SRR5085167:{asserts:{has_line:{line:"YAL038W - - YAL038W CDC19 - chrI:71785-73288 - - 3375.85 3161.36 3590.33 OK"}}}}},"Transcripts Expression from Cufflinks":{element_tests:{SRR5085167:{asserts:{has_line:{line:"YAL038W_mRNA - - YAL038W CDC19 - chrI:71785-73288 1503 57.5601 3375.85 3161.36 3590.33 OK"}}}}},"Stranded Coverage":{element_tests:{SRR5085167_forward:{asserts:{has_size:{value:555489,delta:5e4}}},SRR5085167_reverse:{asserts:{has_size:{value:526952,delta:5e4}}}}},"Unstranded Coverage":{element_tests:{SRR5085167:{asserts:{has_size:{value:978542,delta:9e4}}}}}}}]}],path:"./workflows/transcriptomics/rnaseq-sr"},{version:1.2,workflows:[{name:"main",subclass:"Galaxy",publish:!0,primaryDescriptorPath:"/goseq-go-kegg-enrichment-analsis.ga",testParameterFiles:["/goseq-go-kegg-enrichment-analsis-tests.yml"],authors:[{name:"Amirhossein Naghsh Nilchi",orcid:"0000-0003-1329-3044"}],definition:{a_galaxy_workflow:"true",annotation:"This workflow is used for GO and KEGG enrichment analysis using GOseq tools.",comments:[],creator:[{class:"Person",identifier:"https://orcid.org/0000-0003-1329-3044",name:"Amirhossein Naghsh Nilchi"}],"format-version":"0.1",license:"MIT",release:"0.1",name:"Goseq GO-KEGG Enrichment Analysis",report:{markdown:"\n# Workflow Execution Report\n\n## Workflow Inputs\n```galaxy\ninvocation_inputs()\n```\n\n## Workflow Outputs\n```galaxy\ninvocation_outputs()\n```\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n"},steps:{0:{annotation:"Select which genome your data is from",content_id:null,errors:null,id:0,input_connections:{},inputs:[{description:"Select which genome your data is from",name:"Select genome to use"}],label:"Select genome to use",name:"Input parameter",outputs:[],position:{left:1.3275521636144472,top:485.4318730139212},tool_id:null,tool_state:'{"restrictOnConnections": true, "parameter_type": "text", "optional": false}',tool_version:null,type:"parameter_input",uuid:"621e1d7b-7884-4adb-911e-cdd249855486",when:null,workflow_outputs:[{label:null,output_name:"output",uuid:"c5c1a856-ae08-4281-816b-d0e70a3d3373"}]},1:{annotation:"input1: table with two columns. 1 gene 2 T/F based on Differential Expression Analysis",content_id:null,errors:null,id:1,input_connections:{},inputs:[{description:"input1: table with two columns. 1 gene 2 T/F based on Differential Expression Analysis",name:"Differential expression result"}],label:"Differential expression result",name:"Input dataset",outputs:[],position:{left:337.51186934168175,top:496.3229330319098},tool_id:null,tool_state:'{"optional": false, "format": ["tabular"], "tag": null}',tool_version:null,type:"data_input",uuid:"52bf21e0-e1d7-41dd-87c2-ba4808a77b5d",when:null,workflow_outputs:[]},2:{annotation:"Select the format of your genes",content_id:null,errors:null,id:2,input_connections:{},inputs:[{description:"Select the format of your genes",name:"Select gene ID format"}],label:"Select gene ID format",name:"Input parameter",outputs:[],position:{left:0,top:603.4685835542876},tool_id:null,tool_state:'{"restrictOnConnections": true, "parameter_type": "text", "optional": false}',tool_version:null,type:"parameter_input",uuid:"03c15189-4a0c-44fa-b4bc-717db6650797",when:null,workflow_outputs:[{label:null,output_name:"output",uuid:"61021ac9-ae04-486a-bb69-583314324551"}]},3:{annotation:"input2: table with two columns. 1 gene 2 gene length",content_id:null,errors:null,id:3,input_connections:{},inputs:[{description:"input2: table with two columns. 1 gene 2 gene length",name:"gene length"}],label:"gene length",name:"Input dataset",outputs:[],position:{left:346.07461300595065,top:583.8602444483994},tool_id:null,tool_state:'{"optional": false, "format": ["tabular"], "tag": null}',tool_version:null,type:"data_input",uuid:"def1d40a-71dc-4c0b-bd8d-cb0cd00b1ffa",when:null,workflow_outputs:[]},4:{annotation:`a table with two columns: 1. 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a/_nuxt/5rd4E4xr.js +++ b/_nuxt/CF8hz7IP.js @@ -1 +1 @@ -import{_ as r,o,c as t,r as s}from"./BHq-Kz8I.js";const c={};function n(e,a){return o(),t("td",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as t,r as s}from"./B5iSH5Mq.js";const c={};function n(e,a){return o(),t("td",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/BOPqdQAU.js b/_nuxt/CFrYCo5z.js similarity index 85% rename from _nuxt/BOPqdQAU.js rename to _nuxt/CFrYCo5z.js index 65e1263c1..6320f2f59 100644 --- a/_nuxt/BOPqdQAU.js +++ b/_nuxt/CFrYCo5z.js @@ -1 +1 @@ -import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./BHq-Kz8I.js";const f=["id"],l=["href"],k=i({__name:"ProseH5",props:{id:{}},setup(r){const a=r,{headings:o}=c().public.mdc,d=p(()=>{var e;return a.id&&((e=o==null?void 0:o.anchorLinks)==null?void 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e("div",void 0,[e("p","Document is empty"),e("p",`Add content to it by opening ${t._source}/${t._file} file.`)])}});export{r as default}; +import{h as n,N as e}from"./B5iSH5Mq.js";const r=n({name:"DocumentDrivenEmpty",props:{value:{type:Object,required:!0}},render({value:t}){return e("div",void 0,[e("p","Document is empty"),e("p",`Add content to it by opening ${t._source}/${t._file} file.`)])}});export{r as default}; diff --git a/_nuxt/Cd8Y6liO.js b/_nuxt/COt8wwey.js similarity index 64% rename from _nuxt/Cd8Y6liO.js rename to _nuxt/COt8wwey.js index 6891aa871..8c8714f01 100644 --- a/_nuxt/Cd8Y6liO.js +++ b/_nuxt/COt8wwey.js @@ -1 +1 @@ -import{_ as r,o,c as t,r as s}from"./BHq-Kz8I.js";const a={};function c(e,n){return o(),t("table",null,[s(e.$slots,"default")])}const _=r(a,[["render",c]]);export{_ as default}; +import{_ as r,o,c as t,r as s}from"./B5iSH5Mq.js";const a={};function c(e,n){return o(),t("table",null,[s(e.$slots,"default")])}const _=r(a,[["render",c]]);export{_ as default}; diff --git a/_nuxt/BE5jgTkI.js b/_nuxt/C_EH858F.js similarity index 79% rename from _nuxt/BE5jgTkI.js rename to _nuxt/C_EH858F.js index a8433f804..6babdaad2 100644 --- a/_nuxt/BE5jgTkI.js +++ b/_nuxt/C_EH858F.js @@ -1 +1 @@ -import{h as t,r}from"./BHq-Kz8I.js";const o=t({__name:"ProseCode",props:{code:{type:String,default:""},language:{type:String,default:null},filename:{type:String,default:null},highlights:{type:Array,default:()=>[]},meta:{type:String,default:null}},setup(n){return(e,a)=>r(e.$slots,"default")}});export{o as _}; +import{h as t,r}from"./B5iSH5Mq.js";const o=t({__name:"ProseCode",props:{code:{type:String,default:""},language:{type:String,default:null},filename:{type:String,default:null},highlights:{type:Array,default:()=>[]},meta:{type:String,default:null}},setup(n){return(e,a)=>r(e.$slots,"default")}});export{o as _}; diff --git a/_nuxt/Oyapntkl.js b/_nuxt/Ci7eaOln.js similarity index 97% rename from _nuxt/Oyapntkl.js rename to _nuxt/Ci7eaOln.js index cceaa2e38..72b416a91 100644 --- a/_nuxt/Oyapntkl.js +++ b/_nuxt/Ci7eaOln.js @@ -1 +1 @@ -import{_ as a,u as o,o as s,c as i,a as e,t as r,p as u,f as l}from"./BHq-Kz8I.js";const c=t=>(u("data-v-6fdef64d"),t=t(),l(),t),d={class:"font-sans antialiased bg-white dark:bg-black text-black dark:text-white grid min-h-screen place-content-center overflow-hidden"},p=c(()=>e("div",{class:"fixed -bottom-1/2 left-0 right-0 h-1/2 spotlight"},null,-1)),h={class:"max-w-520px text-center"},f=["textContent"],g=["textContent"],b={__name:"error-500",props:{appName:{type:String,default:"Nuxt"},version:{type:String,default:""},statusCode:{type:Number,default:500},statusMessage:{type:String,default:"Server error"},description:{type:String,default:"This page is temporarily unavailable."}},setup(t){const n=t;return o({title:`${n.statusCode} - ${n.statusMessage} | 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+import{_ as a,u as o,o as s,c as i,a as e,t as r,p as u,f as l}from"./B5iSH5Mq.js";const c=t=>(u("data-v-6fdef64d"),t=t(),l(),t),d={class:"font-sans antialiased bg-white dark:bg-black text-black dark:text-white grid min-h-screen place-content-center overflow-hidden"},p=c(()=>e("div",{class:"fixed -bottom-1/2 left-0 right-0 h-1/2 spotlight"},null,-1)),h={class:"max-w-520px text-center"},f=["textContent"],g=["textContent"],b={__name:"error-500",props:{appName:{type:String,default:"Nuxt"},version:{type:String,default:""},statusCode:{type:Number,default:500},statusMessage:{type:String,default:"Server error"},description:{type:String,default:"This page is temporarily unavailable."}},setup(t){const n=t;return o({title:`${n.statusCode} - ${n.statusMessage} | ${n.appName}`,script:[],style:[{children:'*,:before,:after{box-sizing:border-box;border-width:0;border-style:solid;border-color:var(--un-default-border-color, #e5e7eb)}:before,:after{--un-content:""}html{line-height:1.5;-webkit-text-size-adjust:100%;-moz-tab-size:4;tab-size:4;font-family:ui-sans-serif,system-ui,sans-serif,"Apple Color Emoji","Segoe UI Emoji",Segoe UI Symbol,"Noto Color Emoji";font-feature-settings:normal;font-variation-settings:normal;-webkit-tap-highlight-color:transparent}body{margin:0;line-height:inherit}h1{font-size:inherit;font-weight:inherit}h1,p{margin:0}*,:before,:after{--un-rotate:0;--un-rotate-x:0;--un-rotate-y:0;--un-rotate-z:0;--un-scale-x:1;--un-scale-y:1;--un-scale-z:1;--un-skew-x:0;--un-skew-y:0;--un-translate-x:0;--un-translate-y:0;--un-translate-z:0;--un-pan-x: ;--un-pan-y: ;--un-pinch-zoom: ;--un-scroll-snap-strictness:proximity;--un-ordinal: ;--un-slashed-zero: ;--un-numeric-figure: ;--un-numeric-spacing: ;--un-numeric-fraction: ;--un-border-spacing-x:0;--un-border-spacing-y:0;--un-ring-offset-shadow:0 0 rgb(0 0 0 / 0);--un-ring-shadow:0 0 rgb(0 0 0 / 0);--un-shadow-inset: ;--un-shadow:0 0 rgb(0 0 0 / 0);--un-ring-inset: ;--un-ring-offset-width:0px;--un-ring-offset-color:#fff;--un-ring-width:0px;--un-ring-color:rgb(147 197 253 / .5);--un-blur: ;--un-brightness: ;--un-contrast: ;--un-drop-shadow: ;--un-grayscale: ;--un-hue-rotate: ;--un-invert: ;--un-saturate: ;--un-sepia: ;--un-backdrop-blur: ;--un-backdrop-brightness: ;--un-backdrop-contrast: ;--un-backdrop-grayscale: ;--un-backdrop-hue-rotate: ;--un-backdrop-invert: ;--un-backdrop-opacity: ;--un-backdrop-saturate: ;--un-backdrop-sepia: }'}]}),(m,x)=>(s(),i("div",d,[p,e("div",h,[e("h1",{class:"text-8xl sm:text-10xl font-medium mb-8",textContent:r(t.statusCode)},null,8,f),e("p",{class:"text-xl px-8 sm:px-0 sm:text-4xl font-light mb-16 leading-tight",textContent:r(t.description)},null,8,g)])]))}},k=a(b,[["__scopeId","data-v-6fdef64d"]]);export{k as default}; diff --git a/_nuxt/DlFKRhuC.js b/_nuxt/CkvKG46v.js similarity index 80% rename from _nuxt/DlFKRhuC.js rename to _nuxt/CkvKG46v.js index d5f782069..037e11df3 100644 --- a/_nuxt/DlFKRhuC.js +++ b/_nuxt/CkvKG46v.js @@ -1 +1 @@ -import{_ as t,c as a,a as s,r as o,o as c}from"./BHq-Kz8I.js";const r={},l={class:"flex w-full"},n={class:"w-1/4 p-4 overflow-y-auto"},_={class:"w-3/4 p-4 overflow-y-auto"};function d(e,f){return c(),a("div",l,[s("div",n,[o(e.$slots,"sidebar")]),s("div",_,[o(e.$slots,"content")])])}const u=t(r,[["render",d]]);export{u as default}; +import{_ as t,c as a,a as s,r as o,o as c}from"./B5iSH5Mq.js";const r={},l={class:"flex w-full"},n={class:"w-1/4 p-4 overflow-y-auto"},_={class:"w-3/4 p-4 overflow-y-auto"};function d(e,f){return c(),a("div",l,[s("div",n,[o(e.$slots,"sidebar")]),s("div",_,[o(e.$slots,"content")])])}const u=t(r,[["render",d]]);export{u as default}; diff --git a/_nuxt/WloyxQLA.js b/_nuxt/CoVjAYz1.js similarity index 64% rename from _nuxt/WloyxQLA.js rename to _nuxt/CoVjAYz1.js index 83565fe50..c517876ac 100644 --- a/_nuxt/WloyxQLA.js +++ b/_nuxt/CoVjAYz1.js @@ -1 +1 @@ -import{_ as o,o as r,c as s,r as t}from"./BHq-Kz8I.js";const c={};function n(e,l){return r(),s("ol",null,[t(e.$slots,"default")])}const _=o(c,[["render",n]]);export{_ as default}; +import{_ as o,o as r,c as s,r as t}from"./B5iSH5Mq.js";const c={};function n(e,l){return r(),s("ol",null,[t(e.$slots,"default")])}const _=o(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/BCxHAuNQ.js b/_nuxt/D4nRDJWs.js similarity index 97% rename from _nuxt/BCxHAuNQ.js rename to _nuxt/D4nRDJWs.js index 9a89b9a28..2cd5d32bd 100644 --- a/_nuxt/BCxHAuNQ.js +++ b/_nuxt/D4nRDJWs.js @@ -1 +1 @@ -import{_ as r,u as s,o as i,c as u,a as e,t as o,b as c,w as d,d as l,e as p,p as h,f}from"./BHq-Kz8I.js";const g=t=>(h("data-v-73a07988"),t=t(),f(),t),b={class:"font-sans antialiased bg-white dark:bg-black text-black dark:text-white grid min-h-screen place-content-center overflow-hidden"},x=g(()=>e("div",{class:"fixed left-0 right-0 spotlight z-10"},null,-1)),m={class:"max-w-520px text-center z-20"},y=["textContent"],_=["textContent"],k={class:"w-full flex items-center justify-center"},w={__name:"error-404",props:{appName:{type:String,default:"Nuxt"},version:{type:String,default:""},statusCode:{type:Number,default:404},statusMessage:{type:String,default:"Not Found"},description:{type:String,default:"Sorry, the page you are looking for could not be found."},backHome:{type:String,default:"Go back home"}},setup(t){const n=t;return s({title:`${n.statusCode} - ${n.statusMessage} | ${n.appName}`,script:[],style:[{children:'*,:before,:after{box-sizing:border-box;border-width:0;border-style:solid;border-color:var(--un-default-border-color, #e5e7eb)}:before,:after{--un-content:""}html{line-height:1.5;-webkit-text-size-adjust:100%;-moz-tab-size:4;tab-size:4;font-family:ui-sans-serif,system-ui,sans-serif,"Apple Color Emoji","Segoe UI Emoji",Segoe UI Symbol,"Noto Color 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;--un-drop-shadow: ;--un-grayscale: ;--un-hue-rotate: ;--un-invert: ;--un-saturate: ;--un-sepia: ;--un-backdrop-blur: ;--un-backdrop-brightness: ;--un-backdrop-contrast: ;--un-backdrop-grayscale: ;--un-backdrop-hue-rotate: ;--un-backdrop-invert: ;--un-backdrop-opacity: ;--un-backdrop-saturate: ;--un-backdrop-sepia: }'}]}),(z,S)=>{const a=p;return i(),u("div",b,[x,e("div",m,[e("h1",{class:"text-8xl sm:text-10xl font-medium mb-8",textContent:o(t.statusCode)},null,8,y),e("p",{class:"text-xl px-8 sm:px-0 sm:text-4xl font-light mb-16 leading-tight",textContent:o(t.description)},null,8,_),e("div",k,[c(a,{to:"/",class:"gradient-border text-md sm:text-xl py-2 px-4 sm:py-3 sm:px-6 cursor-pointer"},{default:d(()=>[l(o(t.backHome),1)]),_:1})])])])}}},C=r(w,[["__scopeId","data-v-73a07988"]]);export{C as default}; +import{_ as r,u as s,o as i,c as u,a as e,t as o,b as c,w as d,d as l,e as p,p as h,f}from"./B5iSH5Mq.js";const g=t=>(h("data-v-73a07988"),t=t(),f(),t),b={class:"font-sans antialiased bg-white dark:bg-black text-black dark:text-white grid min-h-screen place-content-center overflow-hidden"},x=g(()=>e("div",{class:"fixed left-0 right-0 spotlight z-10"},null,-1)),m={class:"max-w-520px text-center z-20"},y=["textContent"],_=["textContent"],k={class:"w-full flex items-center justify-center"},w={__name:"error-404",props:{appName:{type:String,default:"Nuxt"},version:{type:String,default:""},statusCode:{type:Number,default:404},statusMessage:{type:String,default:"Not Found"},description:{type:String,default:"Sorry, the page you are looking for could not be found."},backHome:{type:String,default:"Go back home"}},setup(t){const n=t;return s({title:`${n.statusCode} - ${n.statusMessage} | ${n.appName}`,script:[],style:[{children:'*,:before,:after{box-sizing:border-box;border-width:0;border-style:solid;border-color:var(--un-default-border-color, #e5e7eb)}:before,:after{--un-content:""}html{line-height:1.5;-webkit-text-size-adjust:100%;-moz-tab-size:4;tab-size:4;font-family:ui-sans-serif,system-ui,sans-serif,"Apple Color Emoji","Segoe UI Emoji",Segoe UI Symbol,"Noto Color Emoji";font-feature-settings:normal;font-variation-settings:normal;-webkit-tap-highlight-color:transparent}body{margin:0;line-height:inherit}h1{font-size:inherit;font-weight:inherit}a{color:inherit;text-decoration:inherit}h1,p{margin:0}*,:before,:after{--un-rotate:0;--un-rotate-x:0;--un-rotate-y:0;--un-rotate-z:0;--un-scale-x:1;--un-scale-y:1;--un-scale-z:1;--un-skew-x:0;--un-skew-y:0;--un-translate-x:0;--un-translate-y:0;--un-translate-z:0;--un-pan-x: ;--un-pan-y: ;--un-pinch-zoom: ;--un-scroll-snap-strictness:proximity;--un-ordinal: ;--un-slashed-zero: ;--un-numeric-figure: ;--un-numeric-spacing: ;--un-numeric-fraction: ;--un-border-spacing-x:0;--un-border-spacing-y:0;--un-ring-offset-shadow:0 0 rgb(0 0 0 / 0);--un-ring-shadow:0 0 rgb(0 0 0 / 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c={};function n(e,a){return o(),t("tr",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as t,r as s}from"./B5iSH5Mq.js";const c={};function n(e,a){return o(),t("tr",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/D6VVh6U6.js b/_nuxt/D6VVh6U6.js deleted file mode 100644 index 864204d06..000000000 --- a/_nuxt/D6VVh6U6.js +++ /dev/null @@ -1 +0,0 @@ -import{_ as m}from"./BE5jgTkI.js";import"./BHq-Kz8I.js";export{m as default}; diff --git a/_nuxt/BEWi2GCC.js b/_nuxt/DBCpI6F1.js similarity index 98% rename from _nuxt/BEWi2GCC.js rename to _nuxt/DBCpI6F1.js index c36394401..975eadb82 100644 --- a/_nuxt/BEWi2GCC.js +++ b/_nuxt/DBCpI6F1.js @@ -1 +1 @@ -import{y as S,G as T,H as E,J as C,av as A,au as O,S as P,a5 as h}from"./BHq-Kz8I.js";import{i as I}from"./IShi1APO.js";function R(e,o){if(typeof e!="string")throw new TypeError("argument str must be a string");const 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a=e(o,[["render",t]]);export{a as default}; diff --git a/_nuxt/DW6I7joz.js b/_nuxt/DW6I7joz.js new file mode 100644 index 000000000..1432baa9b --- /dev/null +++ b/_nuxt/DW6I7joz.js @@ -0,0 +1 @@ +import{_ as m}from"./C_EH858F.js";import"./B5iSH5Mq.js";export{m as default}; diff --git a/_nuxt/BOWpLLr4.js b/_nuxt/Dao-CjYI.js similarity index 58% rename from _nuxt/BOWpLLr4.js rename to _nuxt/Dao-CjYI.js index 85e424d05..7cddfb686 100644 --- a/_nuxt/BOWpLLr4.js +++ b/_nuxt/Dao-CjYI.js @@ -1 +1 @@ -import{h as n,N as e}from"./BHq-Kz8I.js";const t=n({name:"DocumentDrivenNotFound",render(){return e("div","Document not found")}});export{t as default}; +import{h as n,N as e}from"./B5iSH5Mq.js";const t=n({name:"DocumentDrivenNotFound",render(){return e("div","Document not found")}});export{t as default}; diff --git a/_nuxt/C-W-wDfH.js b/_nuxt/DbK4uoPL.js similarity index 85% rename from _nuxt/C-W-wDfH.js rename to _nuxt/DbK4uoPL.js index b75e1691a..2d00ba372 100644 --- a/_nuxt/C-W-wDfH.js +++ 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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
  • Clinical Metaproteomics Quantitation
  • Generate a Clinical Metaproteomics Database
  • MetaProSIP OpenMS 2.8
  • Segmentation and counting of cell nuclei in fluorescence microscopy images
  • bacterial_genome_annotation
  • amr_gene_detection
  • Gene-based Pathogen Identification
  • Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation
  • Allele-based Pathogen Identification
  • Nanopore Preprocessing
  • Taxonomy Profiling and Visualization with Krona
  • Parallel Accession Download
  • sra_manifest_to_concatenated_fastqs_parallel
  • Differential gene expression for single-cell data using pseudo-bulk counts with edgeR
  • scRNA-seq_preprocessing_10X_cellPlex
  • scRNA-seq_preprocessing_10X_v3_Bundle
  • Velocyto-on10X-from-bundled
  • Velocyto-on10X-filtered-barcodes
  • baredSC_1d_logNorm
  • baredSC_2d_logNorm
  • COVID-19: variation analysis of ARTIC ONT data
  • SARS-CoV-2 Illumina Amplicon pipeline - iVar based
  • COVID-19: variation analysis on WGS SE data
  • COVID-19: variation analysis reporting
  • COVID-19: variation analysis on ARTIC PE data
  • COVID-19: consensus construction
  • COVID-19: variation analysis on WGS PE data
  • dcTMD calculations with GROMACS
  • Fragment-based virtual screening using rDock for docking and SuCOS for pose scoring
  • MMGBSA calculations with GROMACS
  • Create GRO and TOP complex files
  • Quality and Contamination Control For Genome Assembly
  • Assembly polishing with long reads
  • Bacterial Genome Assembly using Shovill
  • Genome assembly with Flye
  • Average Bigwig between replicates
  • Get Confident Peaks From ChIP_SR replicates
  • Get Confident Peaks From ChIP_PE replicates
  • Get Confident Peaks From ATAC or CUTandRUN replicates
  • ChIPseq_SR
  • ATACseq
  • CUTandRUN
  • ChIPseq_PE
  • Hi-C_fastqToCool_hicup_cooler
  • cHi-C_fastqToCool_hicup_cooler
  • Hi-C_juicermediumtabixToCool_cooler
  • Hi-C_fastqToPairs_hicup
  • RNA-seq for Single-read fastqs
  • Goseq GO-KEGG Enrichment Analysis
  • BREW3R
  • RNAseq_DE_filtering_plotting
  • RNA-seq for Paired-end fastqs
  • Pox Virus Illumina Amplicon Workflow from half-genomes
  • kmer-profiling-hifi-VGP1
  • Assembly-decontamination-VGP9
  • Purge-duplicate-contigs-VGP6
  • Purging-duplicates-one-haplotype-VGP6b
  • Scaffolding-BioNano-VGP7
  • kmer-profiling-hifi-trio-VGP2
  • Generate Nx and Size plots for multiple assemblies
  • Assembly-Hifi-HiC-phasing-VGP4
  • Assembly-Hifi-Trio-phasing-VGP5
  • Scaffolding with Hi-C data VGP8
  • Mitogenome-Assembly-VGP0
  • Assembly-Hifi-only-VGP3
  • Paired end variant calling in haploid system
  • Generic variation analysis on WGS PE data
  • Generic variation analysis reporting
  • dada2 amplicon analysis pipeline - for paired end data
  • QIIME2 IIa: Denoising (sequence quality control) and feature table creation (single-end)
  • QIIME2 IIb: Denoising (sequence quality control) and feature table creation (paired-end)
  • QIIME2 Ia: multiplexed data (single-end)
  • QIIME2 Ib: multiplexed data (paired-end)
  • QIIME2 Ic: Demultiplexed data (single-end)
  • QIIME2 Id: Demultiplexed data (paired-end)
  • QIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis
  • QIIME2 VI: Diversity metrics and estimations
  • Mass spectrometry: GCMS with metaMS
  • Mass spectrometry: LC-MS preprocessing with XCMS
  • Repeat masking with RepeatModeler and RepeatMasker

Clinical Metaproteomics Quantitation

Clinical Metaproteomics 4: Quantitation

name:clinicalMP
Details

Generate a Clinical Metaproteomics Database

The workflow begins with the Database Generation process. The Galaxy-P team has developed a workflow that collects protein sequences from known disease-causing microorganisms to build a comprehensive database. This extensive database is then refined into a smaller, more relevant dataset using the Metanovo tool.

name:clinicalMP
Details

MetaProSIP OpenMS 2.8

Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics

Details

Segmentation and counting of cell nuclei in fluorescence microscopy images

This workflow performs segmentation and counting of cell nuclei using fluorescence microscopy images. The segmentation step is performed using Otsu thresholding (Otsu, 1979). The workflow is based on the tutorial: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/imaging-introduction/tutorial.html

Details

bacterial_genome_annotation

Annotation of an assembled bacterial genomes to detect genes, potential plasmids, integrons and Insertion sequence (IS) elements.

GenomicsfastaABRomicsbacterial-genomicsAnnotationgenome-annotation
Details

amr_gene_detection

Antimicrobial resistance gene detection from assembled bacterial genomes

fastaGenomicsABRomicsantibiotic-resistanceantimicrobial-resistance-genesantimicrobial resistancebacterial-genomicsAMRAMR-detection
Details

Gene-based Pathogen Identification

Nanopore datasets analysis - Phylogenetic Identification - antibiotic resistance genes detection and contigs building

name:Collectionname:PathoGFAIRname:IWCname:microGalaxy
Details

Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation

Pathogens of all samples report generation and visualization

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Allele-based Pathogen Identification

Microbiome - Variant calling and Consensus Building

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Nanopore Preprocessing

Microbiome - QC and Contamination Filtering

name:Collectionname:microGalaxyname:PathoGFAIRname:Nanoporename:IWC
Details

Taxonomy Profiling and Visualization with Krona

Microbiome - Taxonomy Profiling

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Parallel Accession Download

Downloads fastq files for sequencing run accessions provided in a text file using fasterq-dump. Creates one job per listed run accession.

Details

sra_manifest_to_concatenated_fastqs_parallel

This workflow takes as input a SRA_manifest from SRA Run Selector and will generate one fastq file or fastq pair of file for each experiment (concatenated multiple runs if necessary). Output will be relabelled to match the column specified by the user.

Details

Differential gene expression for single-cell data using pseudo-bulk counts with edgeR

This workflow uses the decoupler tool in Galaxy to generate pseudobulk counts from an annotated AnnData file obtained from scRNA-seq analysis. Following the pseudobulk step, differential expression genes (DEG) are calculated using the edgeR tool. The workflow also includes data sanitation steps to ensure smooth operation of edgeR and minimizing potential issues. Additionally, a Volcano plot tool is used to visualize the results after the DEG analysis.

Details

scRNA-seq_preprocessing_10X_cellPlex

This workflow processes the CMO fastqs with CITE-seq-Count and include the translation step required for cellPlex processing. In parallel it processes the Gene Expresion fastqs with STARsolo, filter cells with DropletUtils and reformat all outputs to be easily used by the function 'Read10X' from Seurat.

#single-cell
Details

scRNA-seq_preprocessing_10X_v3_Bundle

This workflow processes the Gene Expresion fastqs with STARsolo, filter cells with DropletUtils and reformat all outputs to be easily used by the function 'Read10X' from Seurat.

#single-cell
Details

Velocyto-on10X-from-bundled

Run velocyto to get loom with counts of spliced and unspliced. It will extract the 'barcodes' from the bundled outputs.

name:single-cell
Details

Velocyto-on10X-filtered-barcodes

Run velocyto to get loom with counts of spliced and unspliced

name:single-cell
Details

baredSC_1d_logNorm

Run baredSC in 1 dimension in logNorm for 1 to N gaussians and combine models.

Details

baredSC_2d_logNorm

Run baredSC in 2 dimensions in logNorm for 1 to N gaussians and combine models.

Details

COVID-19: variation analysis of ARTIC ONT data

This workflow for ONT-sequenced ARTIC data is modeled after the alignment/variant-calling steps of the [ARTIC pipeline](https://artic.readthedocs.io/en/latest/). It performs, essentially, the same steps as that pipeline’s minion command, i.e. read mapping with minimap2 and variant calling with medaka. Like the Illumina ARTIC workflow it uses ivar for primer trimming. Since ONT-sequenced reads have a much higher error rate than Illumina-sequenced reads and are therefor plagued more by false-positive variant calls, this workflow does make no attempt to handle amplicons affected by potential primer-binding site mutations.

COVID-19ARTICONTcovid19.galaxyproject.org
Details

SARS-CoV-2 Illumina Amplicon pipeline - iVar based

Find and annotate variants in ampliconic SARS-CoV-2 Illumina sequencing data and classify samples with pangolin and nextclade

COVID-19ARTICiwc
Details

COVID-19: variation analysis on WGS SE data

This workflows performs single end read mapping with bowtie2 followed by sensitive variant calling across a wide range of AFs with lofreq

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis reporting

This workflow takes a VCF dataset of variants produced by any of the *-variant-calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates tabular lists of variants by Samples and by Variant, and an overview plot of variants and their allele-frequencies.

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis on ARTIC PE data

The workflow for Illumina-sequenced ARTIC data builds on the RNASeq workflow for paired-end data using the same steps for mapping and variant calling, but adds extra logic for trimming ARTIC primer sequences off reads with the ivar package. In addition, this workflow uses ivar also to identify amplicons affected by ARTIC primer-binding site mutations and tries to exclude reads derived from such tainted amplicons when calculating allele-frequencies of other variants.

COVID-19ARTICcovid19.galaxyproject.org
Details

COVID-19: consensus construction

Build a consensus sequence from FILTER PASS variants with intrasample allele-frequency above a configurable consensus threshold. Hard-mask regions with low coverage (but not consensus variants within them) and ambiguous sites.

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis on WGS PE data

This workflows performs paired end read mapping with bwa-mem followed by sensitive variant calling across a wide range of AFs with lofreq

COVID-19covid19.galaxyproject.orgiwcemergen_validated
Details

dcTMD calculations with GROMACS

Perform dcTMD free energy simulations and calculations

Details

Fragment-based virtual screening using rDock for docking and SuCOS for pose scoring

Virtual screening of the SARS-CoV-2 main protease with rDock and pose scoring

Details

MMGBSA calculations with GROMACS

MMGBSA simulation and calculation

Details

Create GRO and TOP complex files

Details

Quality and Contamination Control For Genome Assembly

Short paired-end read analysis to provide quality analysis, read cleaning and taxonomy assignation

Genomicsfastqbacterial-genomicstaxonomy-assignmentpaired-endqualityABRomicstrimming
Details

Assembly polishing with long reads

Racon polish with long reads, x4

Details

Bacterial Genome Assembly using Shovill

Assembly of bacterial paired-end short read data with generation of quality metrics and reports

fastqGenomicsbacterial-genomicspaired-endassemblyqualityABRomics
Details

Genome assembly with Flye

Assemble long reads with Flye, then view assembly statistics and assembly graph

Details

Average Bigwig between replicates

We assume the identifiers of the input list are like: sample_name_replicateID. @@ -65,5 +65,5 @@ https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/gcms/tutorial.html

metabolomicsMSworkflow4metabolomicsGC-MSGTNmetaMS
Details

Mass spectrometry: LC-MS preprocessing with XCMS

This workflow is composed with the XCMS tool R package (Smith, C.A. 2006) able to extract, filter, align and fill gapand the possibility to annotate isotopes, adducts and fragments using the CAMERA R package (Kuhl, C 2012). -https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html

metabolomicsMSLC-MSworkflow4metabolomicsxcmsGTN
Details

Repeat masking with RepeatModeler and RepeatMasker

Details
- \ No newline at end of file +https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html

metabolomicsMSLC-MSworkflow4metabolomicsxcmsGTN
Details

Repeat masking with RepeatModeler and RepeatMasker

Details
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json index d899c1bb5..67e7b7631 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580786] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090290] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html index 1f9d51dc4..843e10938 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json index cc245b496..744086d5a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580801] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090292] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html index 757df8a1a..02974ad55 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json index 8ff198676..9e91da07e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580829] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090331] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html index 658567af3..1b76bcd0b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json index c6a838045..fc56b9672 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580753] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090269] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html index fd9936efa..84f931f5d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/_payload.json index ce21279b8..d07e47faa 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580817] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090303] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/index.html index e5a46c66b..ccc0863af 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/_payload.json index 3f595db8b..4907ab750 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580775] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090288] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/index.html index cf99140a4..3fdff78ca 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json index 37fef4919..0478fa81d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580756] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090271] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html index c24a3cadd..a13a0fa5e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json index 155e42358..4a683fb2b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580765] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090273] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html index d91044988..36363495b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json index ec738ebe1..25602d244 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580769] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090284] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html index 116aca401..2630b81fa 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json index 6ecef380c..3bc156157 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580804] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090301] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html index 127208d4c..20297d2c8 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json index 04dd4e9e4..280c3ae46 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580445] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089985] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html index be7609349..fa45bef57 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json index bc51becdc..88bdea08f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580441] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089981] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html index c80ea1d86..a23ddafb0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json index 7f4a702d7..8d05d51b1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580639] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090172] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html index 2a2320760..682ca29f7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json index 7b947fef2..700bcb9a3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580656] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090193] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html index 6ebf29d18..2ac1b4756 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json index c15c813c3..29896aee3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580642] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090182] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html index 0257b4027..83807a8b4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json index d42dc6381..0d329e3fe 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580627] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090170] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html index 540aefb50..a8bc10201 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json index 204ce69de..dfaf4e30c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580435] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089980] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html index 3ffef63b6..096d80129 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json index 7e2db9cf7..625d8e4ca 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580535] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090077] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html index 7e7c775e5..7ab437111 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json index c3e067561..28c3090c5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580537] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090089] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html index abacbac6a..8d2e6f893 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/_payload.json index 12feb41eb..7328cfc7f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580738] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090253] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/index.html index 6a0fd86b3..36445c0e1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/_payload.json index 218a6792d..e97cc8e5a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580662] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090203] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/index.html index 648d7bf6d..57b50ab53 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/_payload.json index ccbdbac21..69b8bb009 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580653] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090191] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/index.html index c2b28b8a4..81cb0d79a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/_payload.json index 00a37ae8a..ddcb70d14 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580431] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089975] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/index.html index 9e318f222..e6baf4ea5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/_payload.json index db2be1fef..8b8b45aa6 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580429] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089974] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/index.html index 1e48a7ba1..60ef4e546 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/_payload.json index 32c5a376f..f384ce446 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580650] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090189] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/index.html index 0ae85f6ce..09af61fd9 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/_payload.json index bf727240b..5a2942575 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580647] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090186] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/index.html index 53ced6fd0..5d3e46958 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/_payload.json index 166f79924..e9821b740 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580645] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090184] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/index.html index bfed50c3a..e65d300f5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json index 44a555e49..f4629fc59 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580659] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090195] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html index ece2285d3..9c6c25ab3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json index 872ff6e44..2e4fd2a95 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580842] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090344] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html index 29d1c2301..8b3c4675c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/_payload.json index 35959e67e..b9c97b016 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580454] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089995] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/index.html index dbed5dbd8..d427ce84b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/_payload.json index e7a787638..27cf35f80 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580457] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090000] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/index.html index 74baf41b2..44a841b88 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json index 184e8d992..96e7caa31 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580433] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089978] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html index a86bfc693..a5d55054b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json index 808e79d64..f40573c0b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580560] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090116] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html index 345f57522..92263e6e4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/_payload.json index 5d582253c..7e71a31f5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580881] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090376] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/index.html index b17fe9908..159e3e7ce 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json index 24c9483b2..7517804be 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580442] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089982] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html index f8cd28bed..4d1a815b7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json index 1fae5bc1d..43b1badf4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580838] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090340] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html index 5a8da1b09..00cff2af0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json index 78cede229..9e9874a80 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580719] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090247] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html index c212105da..63f7d8ce9 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json index e6390c89d..c523d5e0f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580557] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090114] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html index 71e25f980..8bb38f99d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json index 84379839a..bb6d3d842 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580565] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090119] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html index 3bb49dfa5..b31cfad18 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json index 8d51c9a4b..762d6d733 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580836] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090334] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html index 4a4715474..9d22d8346 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json index 5e2b6ce48..3662d1b71 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580675] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090209] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html index 53b7eb547..b7088252e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json index 05f6791b5..3dddff34c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580673] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090207] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html index 9598a4372..6f22fe0b3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json index b8fbe6d73..952a83a8d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580682] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090214] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html index ea80e0921..2af61397d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json index 74b2cc139..73fc5a89a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580677] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090211] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html index 28305bec4..7374fa74f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json index db92619c8..ac973a08d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580750] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090267] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html index 2c7b84e7b..e1f1e3e80 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json index 6c66240a6..0a511aa9d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580772] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090286] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html index b7afcc7ff..835eec37a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json index 4b3dc4b1d..c8f830aeb 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580893] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090388] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html index 73b84336c..da5375c31 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json index 4ae5e2f01..65e8d1eae 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580446] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089986] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html index 1f0d67dc6..8e4c0d964 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json index 3fa597d27..6546bd78e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580432] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089977] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html index e9d688aa1..197fe0975 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json index 0fa5fa20e..9d14badc0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580449] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089990] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html index 51751255d..aea538b89 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json index 50ad0c5fc..f87bb034c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580443] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089984] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html index 1e4a8300e..06913dbfe 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json index 71ff74ef6..96f9b8c99 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580624] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090167] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html index 2d0e0e261..a58960349 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json index b038821dc..ec9f9d03a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580747] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090264] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html index 9e679bbd2..b5c731461 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json index b3d975cde..6c1edc56f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580569] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090122] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html index 9618858f0..e01fa023e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json index 1df4249e5..812b40db5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580452] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089993] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html index 487acafb5..3bcb1395f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json index 0c4597bf6..9cd920f04 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580853] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090355] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html index c8951603a..c25a96aff 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json index 4116b1ee1..fcc3c3883 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580857] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090357] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html index 8c3883e12..f55fcf960 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json index 44c072f99..8270c22fa 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580859] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090359] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html index 51dde5cbf..dcdc254ef 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json index 3f0652636..eef66709f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580861] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090362] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html index 70877cbcc..81c084d3d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/_payload.json index 789514901..21ea89727 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580848] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090346] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/index.html index ea3ab2134..5a414d1cd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/_payload.json index 994c2c18a..bc7cf68bd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580851] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090353] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/index.html index 1ccc02a57..5338c0419 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/_payload.json index 2eeb4a1f6..4c24a636f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580875] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090372] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/index.html index f938c72b9..9b22e5925 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/_payload.json index 596d0712d..306930d17 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580878] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090374] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/index.html index 69e619e12..ef2fe7b77 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/_payload.json index 8011107ef..73d9cc9c5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580573] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090124] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/index.html index ad0f1d92a..7beb9459b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/_payload.json index 95c694845..7095ffa3c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580900] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090390] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/index.html index 59ff5f11c..6d4938355 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/_payload.json index 934a19414..b9ee96e26 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580741] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090256] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/index.html index c7c932ce6..799332e15 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/_payload.json index 0f87beacc..3593d30e5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580744] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090258] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/index.html index 8ff3cad48..d46888736 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/_payload.json index fdbf198ce..9fa7a6ea5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580696] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090220] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/index.html index 526ddaa3b..b7f033831 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/_payload.json index 7bbd8f1d4..b2aec415b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580553] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090103] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/index.html index 6292105f1..e7d3b72ec 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json index e484bd653..ba2fd3212 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580540] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090092] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html index 03eb69b9a..e251494ce 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/_payload.json index dce906537..546364573 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580542] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090094] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/index.html index 5de20802f..1bc9d15b0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/_payload.json index 611765085..ef143841f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580551] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090101] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/index.html index b3b9440e5..e7d25adf9 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json index b99b36765..cdfbb40c3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580555] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090111] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html index b5c92e45d..99ee41c0b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json index c8563a5c6..c239bc5ab 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580544] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090097] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html index 166f5645e..fd7186962 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json index 60981a7d7..53d567d20 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580549] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090099] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html index c24402053..fd09a1453 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json index 01c7b28cb..7575ed987 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580451] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089992] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html index b9cc7d5fa..e2d0be05b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json index e6e2dc2d9..f3bb123ba 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580447] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520089988] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html index 91208b02a..4fee70cd7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json index f5b9f1890..0a19181ca 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580840] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090342] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html index fbb78e9f4..0c7626387 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json index 2bf484b13..992f8e800 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580533] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090075] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html index c631a3d71..4477e0d49 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json index 7a06aec4d..6c7e7e644 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732295580519] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1732520090072] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html index 3471682ba..f747f068d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow_manifest.json b/workflow_manifest.json index d2b12effc..7799804a2 100644 --- a/workflow_manifest.json +++ b/workflow_manifest.json @@ -52285,7 +52285,7 @@ ], "format-version": "0.1", "license": "MIT", - "release": "1.0", + "release": "1.1", "name": "RNA-seq for Single-read fastqs", "report": { "markdown": "\n# Workflow Execution Report\n\n## Workflow Inputs\n```galaxy\ninvocation_inputs()\n```\n\n## Workflow Outputs\n```galaxy\ninvocation_outputs()\n```\n\n## Workflow\n```galaxy\nworkflow_display()\n```\n" @@ -52617,7 +52617,7 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"filter_options\": {\"quality_filtering_options\": {\"disable_quality_filtering\": false, \"qualified_quality_phred\": \"30\", \"unqualified_percent_limit\": null, \"n_base_limit\": null}, \"length_filtering_options\": {\"disable_length_filtering\": false, \"length_required\": \"15\", \"length_limit\": null}, \"low_complexity_filter\": {\"enable_low_complexity_filter\": false, \"complexity_threshold\": null}}, \"output_options\": {\"report_html\": false, \"report_json\": true}, \"overrepresented_sequence_analysis\": {\"overrepresentation_analysis\": false, \"overrepresentation_sampling\": null}, \"read_mod_options\": {\"polyg_tail_trimming\": {\"trimming_select\": \"\", \"__current_case__\": 1, \"poly_g_min_len\": null}, \"polyx_tail_trimming\": {\"polyx_trimming_select\": \"\", \"__current_case__\": 1}, \"umi_processing\": {\"umi\": false, \"umi_loc\": null, \"umi_len\": null, \"umi_prefix\": null}, \"cutting_by_quality_options\": {\"cut_by_quality5\": false, \"cut_by_quality3\": false, \"cut_window_size\": null, \"cut_mean_quality\": null}, \"base_correction_options\": {\"correction\": false}}, \"single_paired\": {\"single_paired_selector\": \"single\", \"__current_case__\": 0, \"in1\": {\"__class__\": \"RuntimeValue\"}, \"adapter_trimming_options\": {\"disable_adapter_trimming\": false, \"adapter_sequence1\": {\"__class__\": \"ConnectedValue\"}}, \"global_trimming_options\": {\"trim_front1\": null, \"trim_tail1\": null}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"filter_options\": {\"quality_filtering_options\": {\"disable_quality_filtering\": false, \"qualified_quality_phred\": \"30\", \"unqualified_percent_limit\": null, \"n_base_limit\": null}, \"length_filtering_options\": {\"disable_length_filtering\": false, \"length_required\": \"15\", \"length_limit\": null}, \"low_complexity_filter\": {\"enable_low_complexity_filter\": false, \"complexity_threshold\": null}}, \"output_options\": {\"report_html\": false, \"report_json\": true}, \"overrepresented_sequence_analysis\": {\"overrepresentation_analysis\": false, \"overrepresentation_sampling\": null}, \"read_mod_options\": {\"polyg_tail_trimming\": {\"trimming_select\": \"\", \"__current_case__\": 1, \"poly_g_min_len\": null}, \"polyx_tail_trimming\": {\"polyx_trimming_select\": \"\", \"__current_case__\": 1}, \"umi_processing\": {\"umi\": false, \"umi_loc\": null, \"umi_len\": null, \"umi_prefix\": null}, \"cutting_by_quality_options\": {\"cut_by_quality5\": false, \"cut_by_quality3\": false, \"cut_window_size\": null, \"cut_mean_quality\": null}, \"base_correction_options\": {\"correction\": false}}, \"single_paired\": {\"single_paired_selector\": \"single\", \"__current_case__\": 0, \"in1\": {\"__class__\": \"ConnectedValue\"}, \"adapter_trimming_options\": {\"disable_adapter_trimming\": false, \"adapter_sequence1\": {\"__class__\": \"ConnectedValue\"}}, \"global_trimming_options\": {\"trim_front1\": null, \"trim_tail1\": null}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.24.0+galaxy3", "type": "tool", "uuid": "e31141cc-c8a5-4dde-882f-72c1b8aabe97", @@ -53350,7 +53350,7 @@ } }, "tags": [], - "uuid": "451bba09-1c21-4978-b693-4e64402c5787" + "uuid": "71d32e61-70bd-4571-b3a4-79cc4d726233" }, "tool_id": null, "type": "subworkflow", @@ -53937,7 +53937,7 @@ } }, "tags": [], - "uuid": "f5bde9df-1387-4d76-a90c-1043c93e8de5" + "uuid": "5626e8b4-2709-4f0f-9dd9-bc05f8b35222" }, "tool_id": null, "type": "subworkflow", @@ -53953,7 +53953,7 @@ }, "19": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.3+galaxy2", + "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.6+galaxy0", "errors": null, "id": 19, "input_connections": { @@ -54008,15 +54008,15 @@ "output_name": "output_summary" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.3+galaxy2", + "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.6+galaxy0", "tool_shed_repository": { - "changeset_revision": "f9d49f5cb597", + "changeset_revision": "1b851f87fbe0", "name": "featurecounts", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"alignment\": {\"__class__\": \"ConnectedValue\"}, \"anno\": {\"anno_select\": \"history\", \"__current_case__\": 2, \"reference_gene_sets\": {\"__class__\": \"ConnectedValue\"}, \"gff_feature_type\": \"exon\", \"gff_feature_attribute\": \"gene_id\", \"summarization_level\": false}, \"extended_parameters\": {\"multifeatures\": {\"multifeat\": \"\", \"__current_case__\": 0}, \"exon_exon_junction_read_counting_enabled\": {\"count_exon_exon_junction_reads\": \"\", \"__current_case__\": 1}, \"long_reads\": false, \"by_read_group\": false, \"largest_overlap\": false, \"min_overlap\": \"1\", \"frac_overlap\": \"0\", \"frac_overlap_feature\": \"0\", \"read_extension_5p\": \"0\", \"read_extension_3p\": \"0\", \"read_reduction\": \"\", \"R\": false}, \"format\": \"tabdel_short\", \"include_feature_length_file\": false, \"pe_parameters\": {\"paired_end_status\": \"single_end\", \"__current_case__\": 0}, \"read_filtering_parameters\": {\"mapping_quality\": \"0\", \"splitonly\": \"\", \"primary\": false, \"ignore_dup\": false}, \"strand_specificity\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "2.0.3+galaxy2", + "tool_version": "2.0.6+galaxy0", "type": "tool", "uuid": "5a03b546-eb3f-4e99-b845-24c8f54ed183", "when": "$(inputs.when)", @@ -54718,7 +54718,7 @@ } }, "tags": [], - "uuid": "1d5779a5-fb3a-453a-9fec-8acd491ce5ab" + "uuid": "aead7b4c-1b24-43d4-a44d-fc51b143e669" }, "tool_id": null, "type": "subworkflow", @@ -55517,7 +55517,7 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"fastqc\", \"__current_case__\": 8, \"output\": [{\"__index__\": 0, \"type\": \"data\", \"input\": {\"__class__\": \"RuntimeValue\"}}]}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"fastp\", \"__current_case__\": 7, \"input\": {\"__class__\": \"RuntimeValue\"}}}, {\"__index__\": 2, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"RuntimeValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"RuntimeValue\"}}}]}}, {\"__index__\": 3, \"software_cond\": {\"software\": \"featureCounts\", \"__current_case__\": 9, \"input\": {\"__class__\": \"RuntimeValue\"}}}, {\"__index__\": 4, \"software_cond\": {\"software\": \"rseqc\", \"__current_case__\": 22, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"read_distribution\", \"__current_case__\": 6, \"input\": {\"__class__\": \"RuntimeValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"gene_body_coverage\", \"__current_case__\": 1, \"input\": {\"__class__\": \"RuntimeValue\"}}}]}}, {\"__index__\": 5, \"software_cond\": {\"software\": \"samtools\", \"__current_case__\": 24, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"idxstats\", \"__current_case__\": 2, \"input\": {\"__class__\": \"RuntimeValue\"}}}]}}, {\"__index__\": 6, \"software_cond\": {\"software\": \"picard\", \"__current_case__\": 17, \"output\": [{\"__index__\": 0, \"type\": \"markdups\", \"input\": {\"__class__\": \"RuntimeValue\"}}]}}], \"title\": \"Combined Quality Report \", \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"fastqc\", \"__current_case__\": 8, \"output\": [{\"__index__\": 0, \"type\": \"data\", \"input\": {\"__class__\": \"ConnectedValue\"}}]}}, {\"__index__\": 1, \"software_cond\": {\"software\": \"fastp\", \"__current_case__\": 7, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"software_cond\": {\"software\": \"star\", \"__current_case__\": 28, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"log\", \"__current_case__\": 0, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"genecounts\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 3, \"software_cond\": {\"software\": \"featureCounts\", \"__current_case__\": 9, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"software_cond\": {\"software\": \"rseqc\", \"__current_case__\": 22, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"read_distribution\", \"__current_case__\": 6, \"input\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"type\": {\"type\": \"gene_body_coverage\", \"__current_case__\": 1, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 5, \"software_cond\": {\"software\": \"samtools\", \"__current_case__\": 24, \"output\": [{\"__index__\": 0, \"type\": {\"type\": \"idxstats\", \"__current_case__\": 2, \"input\": {\"__class__\": \"ConnectedValue\"}}}]}}, {\"__index__\": 6, \"software_cond\": {\"software\": \"picard\", \"__current_case__\": 17, \"output\": [{\"__index__\": 0, \"type\": \"markdups\", \"input\": {\"__class__\": \"ConnectedValue\"}}]}}], \"title\": \"Combined Quality Report \", \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "1.24.1+galaxy0", "type": "tool", "uuid": "b5e9c0d2-62f4-41b2-a1c7-5677d8555fd4", @@ -55537,7 +55537,7 @@ } }, "tags": [], - "uuid": "3db32329-f64a-4233-a795-dde75648b802" + "uuid": "4a006f05-4ee3-4bbe-ab82-7d9489c378c0" }, "tool_id": null, "type": "subworkflow", @@ -55565,7 +55565,7 @@ "version": 1 }, "readme": "# RNA-seq single-read Workflow\n\n## Inputs dataset\n\n- Collection of FASTQ files: The workflow needs a list of datasets of fastqsanger.\n- GTF file of annotation: A gtf file with genes annotation.\n- GTF with regions to exclude from FPKM normalization with Cufflinks: Optional, but recommended. A gtf file with regions to exclude from normalization in Cufflinks.\n\n - For instance a gtf that masks chrM for the mm10 genome:\n\n```\nchrM\tchrM_gene\texon\t0\t16299\t.\t+\t.\tgene_id \"chrM_gene_plus\"; transcript_id \"chrM_tx_plus\"; exon_id \"chrM_ex_plus\";\nchrM\tchrM_gene\texon\t0\t16299\t.\t-\t.\tgene_id \"chrM_gene_minus\"; transcript_id \"chrM_tx_minus\"; exon_id \"chrM_ex_minus\";\n```\n\n## Inputs values\n\n- Forward adapter (optional): If not provided, fastp will try to guess the adapter sequence from the data. Its sequences depends on the library preparation. Usually classical Illumina RNA libraries are Truseq and ISML (relatively new Illumina library) is Nextera. If you don't know, use FastQC to determine if it is Truseq or Nextera. If the read length is relatively short (50bp), there is probably no adapter so it will not impact your results.\n- Generate additional QC reports: whether to compute additional QC: FastQC, Picard, Read distribution on genomic features, gene body coverage, reads per chromosomes.\n- Reference genome: this field will be adapted to the genomes available for STAR.\n- Strandedness: For stranded RNA, reverse means that the read is complementary to the coding sequence, forward means that the read is in the same orientation as the coding sequence. This will only count alignments that are compatible with your library preparation strategy. This is also used for the stranded coverage and for FPKM computation with cufflinks/StringTie.\n- Use featureCounts for generating count tables: Whether to use count tables from featureCounts instead of from STAR.\n- Compute Cufflinks FPKM: Whether you want to get FPKM with Cufflinks (pretty long).\n- Compute StringTie FPKM: Whether you want to get FPKM/TPM etc... with StringTie.\n\n## Processing\n\n- The workflow will remove adapters and low quality bases and filter out any read smaller than 15bp.\n- The filtered reads are mapped with STAR with ENCODE parameters (for long RNA-seq but I use it for short also). STAR is also used to count reads per gene and generate strand-specific normalized coverage (on uniquely mapped reads).\n- A multiQC is run to have an overview of the QC. This can also be used to get the strandedness.\n- FPKM values for genes and transcripts are computed with cufflinks using correction for multi-mapped reads (this step is optionnal).\n- FPKM/TPM values for genes are computed with StringTie (this step is optional).\n- The BAM is filtered to keep only uniquely mapped reads (tag NH:i:1).\n- Unstranded coverage is computed with bedtools and normalized to the number of million uniquely mapped reads.\n- The three coverage files are converted to bigwig.\n\n### Warning\n\n- The coverage stranded output depends on the strandedness of the library:\n - If you have an unstranded library, stranded coverages are useless\n - If you have a forward stranded library, the label matches the orientation of reads.\n - If you have a reverse stranded library, `forward` should correspond to genes on the forward strand and uses the reads mapped on the reverse strand. `reverse` should correspond to genes on the reverse strand and uses the reads mapped on the forward strand.\n\n## Contribution\n\n### Version 0.1\n\n@lldelisle wrote the workflow and the tests.\n\n@nagoue updated the tools, made it work in usegalaxy.org, fixed some best practices.\n\n### Version 1.0\n\n@pavanvidem added the new features (featurecount + additional QC) and found a smaller test dataset.\n", - "changelog": "# Changelog\n\n## [1.0] 2024-10-22\n\n### Changes in workflows\n- Add an optional subworkflow with more QC: FastQC, Picard, Read distribution on genomic features, gene body coverage, reads per chromosomes.\n- Add featureCounts as an alternative way to generate count files\n- Use fastp instead of cutadapt which uses pair overlap and allows to have optional adapter sequences\n\n### Tool update\n- `toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.3` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.4`\n\n### Test dataset\n- Using a new subsampled Yeast test data from Zenodo record https://zenodo.org/records/13987631\n\n## [0.9] 2024-09-23\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0`\n\n## [0.8] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n\n## [0.7] 2024-06-25\n\n### Automatic update (triggered manually)\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.6+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy2`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.31.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.2.1+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.2.3+galaxy0`\n\n## [0.6] 2024-02-05\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.6+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.2.0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.10b+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy0`\n\n## [0.5] 2023-09-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.10b+galaxy4`\n\n### Manual update\n- Use STAR to compute normalized strand-specific coverage\n- Add an option to use StringTie to compute FPKM\n- Make cufflinks step optional\n\n## [0.4.1] 2023-09-14\n- add author in dockstore file\n\n## [0.4] 2023-01-16\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1`\n\n## [0.3] 2022-12-17\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1`\n\n## [0.2] 2022-11-02\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1`\n\n## [0.1] 2022-10-12\n\nFirst release.\n", + "changelog": "# Changelog\n\n## [1.1] 2024-11-25\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/featurecounts/featurecounts/2.0.6+galaxy0`\n\n## [1.0] 2024-10-22\n\n### Changes in workflows\n- Add an optional subworkflow with more QC: FastQC, Picard, Read distribution on genomic features, gene body coverage, reads per chromosomes.\n- Add featureCounts as an alternative way to generate count files\n- Use fastp instead of cutadapt which uses pair overlap and allows to have optional adapter sequences\n\n### Tool update\n- `toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.3` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/2.2.1.4`\n\n### Test dataset\n- Using a new subsampled Yeast test data from Zenodo record https://zenodo.org/records/13987631\n\n## [0.9] 2024-09-23\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0`\n\n## [0.8] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n\n## [0.7] 2024-06-25\n\n### Automatic update (triggered manually)\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.6+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy2`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.30.0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_genomecoveragebed/2.31.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.2.1+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/2.2.3+galaxy0`\n\n## [0.6] 2024-02-05\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.6+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/map_param_value/map_param_value/0.2.0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.10b+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.11a+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/1.1.4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy0`\n\n## [0.5] 2023-09-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.10b+galaxy4`\n\n### Manual update\n- Use STAR to compute normalized strand-specific coverage\n- Add an option to use StringTie to compute FPKM\n- Make cufflinks step optional\n\n## [0.4.1] 2023-09-14\n- add author in dockstore file\n\n## [0.4] 2023-01-16\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.1+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.5.2+galaxy1`\n\n## [0.3] 2022-12-17\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1`\n\n## [0.2] 2022-11-02\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/rgrnastar/rna_star/2.7.8a+galaxy1`\n\n## [0.1] 2022-10-12\n\nFirst release.\n", "trsID": "#workflow/github.com/iwc-workflows/rnaseq-sr/main", "tests": [ {