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as h}from"./DlgMYD6p.js";import{ae as _,ah as y,h as C,ai as w,j as N,aj as P,af as $,N as r,e as j}from"./Bwldd-nh.js";import{h as p}from"./IShi1APO.js";import{u as T}from"./Bwce_lx7.js";const D=async e=>{const{content:t}=_().public;typeof(e==null?void 0:e.params)!="function"&&(e=f(e));const a=e.params(),s=t.experimental.stripQueryParameters?m(`/navigation/${`${p(a)}.${t.integrity}`}/${v(a)}.json`):m(`/navigation/${p(a)}.${t.integrity}.json`);if(g())return(await y(()=>import("./D8Jxw69E.js"),__vite__mapDeps([0,1,2,3,4,5]),import.meta.url).then(o=>o.generateNavigation))(a);const n=await $fetch(s,{method:"GET",responseType:"json",params:t.experimental.stripQueryParameters?void 0:{_params:d(a),previewToken:T().getPreviewToken()}});if(typeof n=="string"&&n.startsWith(""))throw new Error("Not found");return n},E=C({name:"ContentNavigation",props:{query:{type:Object,required:!1,default:void 0}},async setup(e){const{query:t}=w(e),a=N(()=>{var n;return typeof((n=t.value)==null?void 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${t._source}/${t._file} file.`)])}});export{r as default}; +import{h as n,N as e}from"./Bwldd-nh.js";const r=n({name:"DocumentDrivenEmpty",props:{value:{type:Object,required:!0}},render({value:t}){return e("div",void 0,[e("p","Document is empty"),e("p",`Add content to it by opening ${t._source}/${t._file} file.`)])}});export{r as default}; diff --git a/_nuxt/CcHQf0Ct.js b/_nuxt/CcHQf0Ct.js deleted file mode 100644 index f9a9c21a2..000000000 --- a/_nuxt/CcHQf0Ct.js +++ /dev/null @@ -1 +0,0 @@ -import{_ as o}from"./Bc-ryf-9.js";import"./BgV0WkfT.js";import"./C-v3KzvZ.js";import"./Ds2n6YOr.js";import"./IShi1APO.js";export{o as default}; diff --git a/_nuxt/IDPrYL4I.js b/_nuxt/Cmo14kAK.js similarity index 80% rename from _nuxt/IDPrYL4I.js rename to _nuxt/Cmo14kAK.js index a93744f3b..5f868ef88 100644 --- a/_nuxt/IDPrYL4I.js +++ b/_nuxt/Cmo14kAK.js @@ -1 +1 @@ -import{_ as t,c as a,a as s,r as o,o as c}from"./BgV0WkfT.js";const r={},l={class:"flex w-full"},n={class:"w-1/4 p-4 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t=n({name:"DocumentDrivenNotFound",render(){return e("div","Document not found")}});export{t as default}; diff --git a/_nuxt/WBVaJg5M.js b/_nuxt/CxI52_Rb.js similarity index 97% rename from _nuxt/WBVaJg5M.js rename to _nuxt/CxI52_Rb.js index f4771983b..529d31a74 100644 --- a/_nuxt/WBVaJg5M.js +++ b/_nuxt/CxI52_Rb.js @@ -1 +1 @@ -import{_ as a,u as o,o as s,c as i,a as e,t as r,p as u,f as l}from"./BgV0WkfT.js";const c=t=>(u("data-v-6fdef64d"),t=t(),l(),t),d={class:"font-sans antialiased bg-white dark:bg-black text-black dark:text-white grid min-h-screen place-content-center overflow-hidden"},p=c(()=>e("div",{class:"fixed -bottom-1/2 left-0 right-0 h-1/2 spotlight"},null,-1)),h={class:"max-w-520px text-center"},f=["textContent"],g=["textContent"],b={__name:"error-500",props:{appName:{type:String,default:"Nuxt"},version:{type:String,default:""},statusCode:{type:Number,default:500},statusMessage:{type:String,default:"Server error"},description:{type:String,default:"This page is 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leading-tight",textContent:r(t.description)},null,8,g)])]))}},k=a(b,[["__scopeId","data-v-6fdef64d"]]);export{k as default}; +import{_ as a,u as o,o as s,c as i,a as e,t as r,p as u,f as l}from"./Bwldd-nh.js";const c=t=>(u("data-v-6fdef64d"),t=t(),l(),t),d={class:"font-sans antialiased bg-white dark:bg-black text-black dark:text-white grid min-h-screen place-content-center overflow-hidden"},p=c(()=>e("div",{class:"fixed -bottom-1/2 left-0 right-0 h-1/2 spotlight"},null,-1)),h={class:"max-w-520px text-center"},f=["textContent"],g=["textContent"],b={__name:"error-500",props:{appName:{type:String,default:"Nuxt"},version:{type:String,default:""},statusCode:{type:Number,default:500},statusMessage:{type:String,default:"Server error"},description:{type:String,default:"This page is temporarily unavailable."}},setup(t){const n=t;return o({title:`${n.statusCode} - ${n.statusMessage} | 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diff --git a/_nuxt/Dy_EqNAL.js b/_nuxt/D-FE0non.js similarity index 64% rename from _nuxt/Dy_EqNAL.js rename to _nuxt/D-FE0non.js index c13c76c44..7eecfd3e8 100644 --- a/_nuxt/Dy_EqNAL.js +++ b/_nuxt/D-FE0non.js @@ -1 +1 @@ -import{_ as r,o,c as t,r as n}from"./BgV0WkfT.js";const s={};function c(e,a){return o(),t("strong",null,[n(e.$slots,"default")])}const _=r(s,[["render",c]]);export{_ as default}; +import{_ as r,o,c as t,r as n}from"./Bwldd-nh.js";const s={};function c(e,a){return o(),t("strong",null,[n(e.$slots,"default")])}const _=r(s,[["render",c]]);export{_ as default}; diff --git a/_nuxt/BSDu85TT.js b/_nuxt/D1Hua_Iv.js similarity index 63% rename from _nuxt/BSDu85TT.js rename to _nuxt/D1Hua_Iv.js index 39a397db7..76e031542 100644 --- a/_nuxt/BSDu85TT.js +++ b/_nuxt/D1Hua_Iv.js @@ -1 +1 @@ -import{_ as r,o,c as t,r as s}from"./BgV0WkfT.js";const c={};function n(e,a){return o(),t("td",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as t,r as s}from"./Bwldd-nh.js";const c={};function n(e,a){return o(),t("td",null,[s(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/C5koRzxw.js b/_nuxt/D41yD3CN.js similarity index 86% rename from _nuxt/C5koRzxw.js rename to _nuxt/D41yD3CN.js index 618456e44..e8b2fe09d 100644 --- a/_nuxt/C5koRzxw.js +++ b/_nuxt/D41yD3CN.js @@ -1 +1 @@ -import{h as o,I as s,o as n,c as r,d as e,v as a,a as t}from"./BgV0WkfT.js";const c={key:0},i=t("code",null,"script",-1),d=t("code",null,"ProseScript",-1),f=o({__name:"ProseScript",props:{src:{type:String,default:""}},setup(l){return(_,m)=>s(!1)?(n(),r("div",c,[e(" Rendering the "),i,e(" element is dangerous and is disabled by default. 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f=["src","alt","width","height"],p=r({__name:"ProseImg",props:{src:{type:String,default:""},alt:{type:String,default:""},width:{type:[String,Number],default:void 0},height:{type:[String,Number],default:void 0}},setup(e){const t=e,i=n(()=>{var s;if((s=t.src)!=null&&s.startsWith("/")&&!t.src.startsWith("//")){const a=c(h(o().app.baseURL));if(a!=="/"&&!t.src.startsWith(a))return l(a,t.src)}return t.src});return(s,a)=>(u(),d("img",{src:g(i),alt:e.alt,width:e.width,height:e.height},null,8,f))}});export{p as default}; diff --git a/_nuxt/CNHD14bb.js b/_nuxt/NZ0G3TRp.js similarity index 64% rename from _nuxt/CNHD14bb.js rename to _nuxt/NZ0G3TRp.js index 2ffd06034..4d91d17d5 100644 --- a/_nuxt/CNHD14bb.js +++ b/_nuxt/NZ0G3TRp.js @@ -1 +1 @@ -import{_ as o,o as r,c as n,r as c}from"./BgV0WkfT.js";const s={};function t(e,a){return r(),n("code",null,[c(e.$slots,"default")])}const _=o(s,[["render",t]]);export{_ as default}; +import{_ as o,o as r,c as n,r as c}from"./Bwldd-nh.js";const s={};function t(e,a){return r(),n("code",null,[c(e.$slots,"default")])}const _=o(s,[["render",t]]);export{_ as default}; diff --git a/_nuxt/Cy_mBHTY.js b/_nuxt/QMiT2Ldp.js similarity index 63% rename from _nuxt/Cy_mBHTY.js rename to _nuxt/QMiT2Ldp.js index 6d5f9d8dc..b134b44b6 100644 --- a/_nuxt/Cy_mBHTY.js +++ b/_nuxt/QMiT2Ldp.js @@ -1 +1 @@ -import{_ as r,o,c as s,r as t}from"./BgV0WkfT.js";const c={};function n(e,l){return o(),s("ul",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; +import{_ as r,o,c as s,r as t}from"./Bwldd-nh.js";const c={};function n(e,l){return o(),s("ul",null,[t(e.$slots,"default")])}const _=r(c,[["render",n]]);export{_ as default}; diff --git a/_nuxt/Dn4gbYY_.js b/_nuxt/WihyRB42.js similarity index 85% rename from _nuxt/Dn4gbYY_.js rename to _nuxt/WihyRB42.js index 9874b36b9..54d9c0951 100644 --- a/_nuxt/Dn4gbYY_.js +++ b/_nuxt/WihyRB42.js @@ -1 +1 @@ -import{h as i,ae as c,j as p,o as s,c as n,I as u,r as t}from"./BgV0WkfT.js";const 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b4913880c..cbe915ac0 100644 --- a/_nuxt/BrvregzE.js +++ b/_nuxt/mv_ZCphl.js @@ -1 +1 @@ -import{a as g,q as m}from"./Vqkcqsaz.js";import{h as C,ai as S,j as b,ae as N,J as _,af as k,N as A}from"./BgV0WkfT.js";import{h as O}from"./IShi1APO.js";import"./Ds2n6YOr.js";const Q=C({name:"ContentQuery",props:{path:{type:String,required:!1,default:void 0},only:{type:Array,required:!1,default:void 0},without:{type:Array,required:!1,default:void 0},where:{type:Object,required:!1,default:void 0},sort:{type:Object,required:!1,default:void 0},limit:{type:Number,required:!1,default:void 0},skip:{type:Number,required:!1,default:void 0},locale:{type:String,required:!1,default:void 0},find:{type:String,required:!1,default:void 0}},async setup(a){const{path:t,only:r,without:o,where:u,sort:f,limit:l,skip:d,locale:s,find:h}=S(a),y=b(()=>{var e;return(e=t.value)==null?void 0:e.includes("/_")}),p=!N().public.content.experimental.advanceQuery;_(()=>a,()=>n(),{deep:!0});const 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null}',tool_version:"2.0.0+galaxy1",type:"tool",uuid:"c1f844d8-487d-4060-beec-1c283abebd2a",when:null,workflow_outputs:[{label:"Human Proteins Volcano Plot",output_name:"out_group_volcano_plot",uuid:"3eb72696-b370-4407-a221-f35a74ab6aff"},{label:"Human Proteins Comparison Plot",output_name:"out_group_comp_plot",uuid:"88fd3bd3-70ce-486e-8cee-361cb9a61bda"}]}},tags:["name:clinicalMP"],uuid:"3a5d60ec-2b30-47cf-a351-7b85df8af9e3",version:4},readme:`# Clinical Metaproteomics 5: Data Interpretation Data interpretation can provide meaningful insights about quantitative proteomic data. Here, MaxQuant data will be interpreted using MSstats by applying a rigorous statistical framework to understand data distribution and variability. Systematic variations are accounted for using subsequent normalization. Users can define the experimental design used by MSstats, such as sample groups and conditions, to perform statistical analysis. The MSstats output provides valuable information about differential protein expression across various conditions, estimates of fold changes, and associated p-values, which aids in the identification of biologically significant proteins. Furthermore, MSstats enables quality control and data visualization, enhancing our ability to draw meaningful conclusions from large-scale proteomic datasets and expands our understanding of complex biological processes. In this current workflow, we perform taxonomic and functional annotations using Unipept and statistical analysis using MSstatsTMT. 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`toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy1`\n\n## [0.1.4] 2024-04-22\n\n### Added\n\n- Add Homozygous Read coverage parameter and calculation\n- Expose Lineage parameter\n\n### Automatic update\n\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy4`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0`\n\n\n## [0.1.3] 2024-03-25\n\n### Manual update\n\n- Add gff output to Busco\n- Add histogram output to Merqury\n- Label subworkflows\n\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1`\n\n## [0.1.2] 2023-11-14\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3`\n- `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1`\n\n## [0.1.1] 2023-11-20\n\n- Fix author in dockstore\n\n\n## [0.1] - 2023-09-27\n\nCreation of workflow for Trio assembly. \n\n",trsID:"#workflow/github.com/iwc-workflows/Assembly-Hifi-Trio-phasing-VGP5/main",tests:[{doc:"Test outline for Assembly-Hifi-Trio-phasing-VGP5",job:{"Meryl Database : Child":{class:"File",location:"https://zenodo.org/records/10056319/files/Meryl%20Database%20-%20Child.meryldb?download=1",filetype:"meryldb"},"Hapmer Database : Paternal":{class:"File",location:"https://zenodo.org/records/10056319/files/Hapmer%20Database%20-%20Paternal.meryldb?download=1",filetype:"meryldb"},"Hapmer Database : Maternal":{class:"File",location:"https://zenodo.org/records/10056319/files/Hapmer%20Database%20-%20Maternal.meryldb?download=1",filetype:"meryldb"},"Genomescope Summary":{class:"File",location:"https://zenodo.org/records/10056319/files/Genomescope%20Summary.txt?download=1",filetype:"txt"},"Genomescope Model Parameters":{class:"File",path:"test-data/GenomeScope_Model_parameters.tabular",filetype:"tabular"},"Pacbio Reads Collection : child":{class:"Collection",collection_type:"list",elements:[{class:"File",identifier:"yeast_reads_sub1.fastq.gz",location:"https://zenodo.org/records/10056319/files/Pacbio%20Reads%20Collection.fastq.gz?download=1"}]},"Paternal Illumina reads (hap1)":{class:"Collection",collection_type:"list",elements:[{class:"File",identifier:"hap1_2.fq",location:"https://zenodo.org/records/10056319/files/Sub_hap1_2.fastqsanger?download=1"},{class:"File",identifier:"hap1_1.fq",location:"https://zenodo.org/records/10056319/files/Sub_hap1_1.fastqsanger?download=1"}]},"Maternal Illumina reads (hap2)":{class:"Collection",collection_type:"list",elements:[{class:"File",identifier:"hap2_2.fq",location:"https://zenodo.org/records/10056319/files/Sub_hap2_2.fastqsanger?download=1"},{class:"File",identifier:"hap2_1.fq",location:"https://zenodo.org/records/10056319/files/Sub_hap2_1.fastqsanger?download=1"}]},"SAK input file (Optional)":null,"Homozygous Read Coverage":null,"Bits for bloom filter":32,"Name for Haplotype 1":"Hap1","Name for Haplotype 2":"Hap2","Database for Busco Lineage":"v5",Lineage:"vertebrata_odb10"},outputs:{"Estimated Genome size":2288021,"Assembly statistics for Hap1 and Hap2":{asserts:{has_line:{line:"# contigs 85 23"}}},"usable hap1 gfa":{asserts:{has_n_lines:{n:175}}},"Hifiasm Trio hap1":{asserts:{has_n_lines:{n:170}}},"Busco Summary Hap1":{asserts:{has_text:{text:"C:1.2%[S:1.2%,D:0.0%],F:0.4%,M:98.4%,n:3354"}}},"Nx Plot":{asserts:{has_size:{value:65e3,delta:5e3}}}}}]}],path:"./workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5"},{version:1.2,workflows:[{name:"main",subclass:"Galaxy",publish:!0,primaryDescriptorPath:"/Scaffolding-HiC-VGP8.ga",testParameterFiles:["/Scaffolding-HiC-VGP8-tests.yml"],authors:[{name:"VGP",url:"https://vertebrategenomeproject.org"},{name:"Galaxy"}],definition:{a_galaxy_workflow:"true",annotation:"Scaffolding using HiC data with YAHS.",comments:[],creator:[{class:"Organization",name:"VGP",url:"https://vertebrategenomeproject.org"},{class:"Organization",name:"Galaxy"}],"format-version":"0.1",license:"CC-BY-4.0",release:"0.2.8",name:"Scaffolding with Hi-C data VGP8",report:{markdown:`# Workflow Execution Report +`,changelog:"# Changelog\n\n## [0.3] 2024-11-11\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.20.0+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.5.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy2`\n\n## [0.2] 2024-08-12\n\n### Added\n\n- Workflow report\n\n### Changed \n\n- Expose the Busco lineage database parameter\n- Fix a bug happening when merging assembly statistics : The presence of the '#' character caused the tables to join incorrectly, and the numbers did not match the metrics\n\n## [0.1.8] 2024-07-22\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n\n## [0.1.7] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0`\n\n## [0.1.6] 2024-05-20\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n\n## [0.1.5] 2024-05-06\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy1`\n\n## [0.1.4] 2024-04-22\n\n### Added\n\n- Add Homozygous Read coverage parameter and calculation\n- Expose Lineage parameter\n\n### Automatic update\n\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy4`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0`\n\n\n## [0.1.3] 2024-03-25\n\n### Manual update\n\n- Add gff output to Busco\n- Add histogram output to Merqury\n- Label subworkflows\n\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1`\n\n## [0.1.2] 2023-11-14\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3`\n- `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1`\n\n## [0.1.1] 2023-11-20\n\n- Fix author in dockstore\n\n\n## [0.1] - 2023-09-27\n\nCreation of workflow for Trio assembly. \n\n",trsID:"#workflow/github.com/iwc-workflows/Assembly-Hifi-Trio-phasing-VGP5/main",tests:[{doc:"Test outline for Assembly-Hifi-Trio-phasing-VGP5",job:{"Meryl Database : Child":{class:"File",location:"https://zenodo.org/records/10056319/files/Meryl%20Database%20-%20Child.meryldb?download=1",filetype:"meryldb"},"Hapmer Database : Paternal":{class:"File",location:"https://zenodo.org/records/10056319/files/Hapmer%20Database%20-%20Paternal.meryldb?download=1",filetype:"meryldb"},"Hapmer Database : Maternal":{class:"File",location:"https://zenodo.org/records/10056319/files/Hapmer%20Database%20-%20Maternal.meryldb?download=1",filetype:"meryldb"},"Genomescope Summary":{class:"File",location:"https://zenodo.org/records/10056319/files/Genomescope%20Summary.txt?download=1",filetype:"txt"},"Genomescope Model Parameters":{class:"File",path:"test-data/GenomeScope_Model_parameters.tabular",filetype:"tabular"},"Pacbio Reads Collection : child":{class:"Collection",collection_type:"list",elements:[{class:"File",identifier:"yeast_reads_sub1.fastq.gz",location:"https://zenodo.org/records/10056319/files/Pacbio%20Reads%20Collection.fastq.gz?download=1"}]},"Paternal Illumina reads (hap1)":{class:"Collection",collection_type:"list",elements:[{class:"File",identifier:"hap1_2.fq",location:"https://zenodo.org/records/10056319/files/Sub_hap1_2.fastqsanger?download=1"},{class:"File",identifier:"hap1_1.fq",location:"https://zenodo.org/records/10056319/files/Sub_hap1_1.fastqsanger?download=1"}]},"Maternal Illumina reads (hap2)":{class:"Collection",collection_type:"list",elements:[{class:"File",identifier:"hap2_2.fq",location:"https://zenodo.org/records/10056319/files/Sub_hap2_2.fastqsanger?download=1"},{class:"File",identifier:"hap2_1.fq",location:"https://zenodo.org/records/10056319/files/Sub_hap2_1.fastqsanger?download=1"}]},"SAK input file (Optional)":null,"Homozygous Read Coverage":null,"Bits for bloom filter":32,"Name for Haplotype 1":"Hap1","Name for Haplotype 2":"Hap2","Database for Busco Lineage":"v5",Lineage:"vertebrata_odb10"},outputs:{"Estimated Genome size":2288021,"Assembly statistics for Hap1 and Hap2":{asserts:{has_line:{line:"# contigs 81 27"}}},"usable hap1 gfa":{asserts:{has_n_lines:{n:167}}},"Hifiasm Trio hap1":{asserts:{has_n_lines:{n:162}}},"Busco Summary Hap1":{asserts:{has_text:{text:"C:1.2%[S:1.1%,D:0.0%],F:0.4%,M:98.4%"}}},"Nx Plot":{asserts:{has_size:{value:65e3,delta:5e3}}}}}]}],path:"./workflows/VGP-assembly-v2/Assembly-Hifi-Trio-phasing-VGP5"},{version:1.2,workflows:[{name:"main",subclass:"Galaxy",publish:!0,primaryDescriptorPath:"/Scaffolding-HiC-VGP8.ga",testParameterFiles:["/Scaffolding-HiC-VGP8-tests.yml"],authors:[{name:"VGP",url:"https://vertebrategenomeproject.org"},{name:"Galaxy"}],definition:{a_galaxy_workflow:"true",annotation:"Scaffolding using HiC data with YAHS.",comments:[],creator:[{class:"Organization",name:"VGP",url:"https://vertebrategenomeproject.org"},{class:"Organization",name:"Galaxy"}],"format-version":"0.1",license:"CC-BY-4.0",release:"0.2.8",name:"Scaffolding with Hi-C data VGP8",report:{markdown:`# Workflow Execution Report Time workflow was invoked diff --git a/_payload.json b/_payload.json index 337eab41b..00c05c9fe 100644 --- a/_payload.json +++ b/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250776863] \ No newline at end of file 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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
  • Clinical Metaproteomics Data Interpretation
  • Clinical Metaproteomics Verification Workflow
  • Clinical Metaproteomics Quantitation
  • Generate a Clinical Metaproteomics Database
  • MetaProSIP OpenMS 2.8
  • Segmentation and counting of cell nuclei in fluorescence microscopy images
  • bacterial_genome_annotation
  • amr_gene_detection
  • Gene-based Pathogen Identification
  • Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation
  • Allele-based Pathogen Identification
  • Nanopore Preprocessing
  • Taxonomy Profiling and Visualization with Krona
  • Parallel Accession Download
  • sra_manifest_to_concatenated_fastqs_parallel
  • Differential gene expression for single-cell data using pseudo-bulk counts with edgeR
  • scRNA-seq_preprocessing_10X_cellPlex
  • scRNA-seq_preprocessing_10X_v3_Bundle
  • Velocyto-on10X-from-bundled
  • Velocyto-on10X-filtered-barcodes
  • baredSC_1d_logNorm
  • baredSC_2d_logNorm
  • COVID-19: variation analysis of ARTIC ONT data
  • SARS-CoV-2 Illumina Amplicon pipeline - iVar based
  • COVID-19: variation analysis on WGS SE data
  • COVID-19: variation analysis reporting
  • COVID-19: variation analysis on ARTIC PE data
  • COVID-19: consensus construction
  • COVID-19: variation analysis on WGS PE data
  • dcTMD calculations with GROMACS
  • Fragment-based virtual screening using rDock for docking and SuCOS for pose scoring
  • MMGBSA calculations with GROMACS
  • Create GRO and TOP complex files
  • Quality and Contamination Control For Genome Assembly
  • Assembly polishing with long reads
  • Bacterial Genome Assembly using Shovill
  • Genome assembly with Flye
  • Average Bigwig between replicates
  • Get Confident Peaks From ChIP_SR replicates
  • Get Confident Peaks From ChIP_PE replicates
  • Get Confident Peaks From ATAC or CUTandRUN replicates
  • ChIPseq_SR
  • ATACseq
  • CUTandRUN
  • ChIPseq_PE
  • Hi-C_fastqToCool_hicup_cooler
  • cHi-C_fastqToCool_hicup_cooler
  • Hi-C_juicermediumtabixToCool_cooler
  • Hi-C_fastqToPairs_hicup
  • RNA-seq for Single-read fastqs
  • Goseq GO-KEGG Enrichment Analysis
  • BREW3R
  • RNAseq_DE_filtering_plotting
  • RNA-seq for Paired-end fastqs
  • Pox Virus Illumina Amplicon Workflow from half-genomes
  • kmer-profiling-hifi-VGP1
  • Assembly-decontamination-VGP9
  • Purge-duplicate-contigs-VGP6
  • Purging-duplicates-one-haplotype-VGP6b
  • Scaffolding-BioNano-VGP7
  • kmer-profiling-hifi-trio-VGP2
  • Generate Nx and Size plots for multiple assemblies
  • Assembly-Hifi-HiC-phasing-VGP4
  • Assembly-Hifi-Trio-phasing-VGP5
  • Scaffolding with Hi-C data VGP8
  • Mitogenome-Assembly-VGP0
  • Assembly-Hifi-only-VGP3
  • Paired end variant calling in haploid system
  • Generic variation analysis on WGS PE data
  • Generic variation analysis reporting
  • dada2 amplicon analysis pipeline - for paired end data
  • QIIME2 IIa: Denoising (sequence quality control) and feature table creation (single-end)
  • QIIME2 IIb: Denoising (sequence quality control) and feature table creation (paired-end)
  • QIIME2 Ia: multiplexed data (single-end)
  • QIIME2 Ib: multiplexed data (paired-end)
  • QIIME2 Ic: Demultiplexed data (single-end)
  • QIIME2 Id: Demultiplexed data (paired-end)
  • QIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis
  • QIIME2 VI: Diversity metrics and estimations
  • Mass spectrometry: GCMS with metaMS
  • Mass spectrometry: LC-MS preprocessing with XCMS
  • Repeat masking with RepeatModeler and RepeatMasker

Clinical Metaproteomics Data Interpretation

This workflow will perform taxonomic and functional annotations using Unipept and statistical analysis using MSstatsTMT.

name:clinicalMP
Details

Clinical Metaproteomics Verification Workflow

In proteomics research, verifying detected peptides is essential for ensuring data accuracy and biological relevance. This tutorial continues from the clinical metaproteomics discovery workflow, focusing on verifying identified microbial peptides using the PepQuery tool.

name:clinicalMP
Details

Clinical Metaproteomics Quantitation

Clinical Metaproteomics 4: Quantitation

name:clinicalMP
Details

Generate a Clinical Metaproteomics Database

The workflow begins with the Database Generation process. The Galaxy-P team has developed a workflow that collects protein sequences from known disease-causing microorganisms to build a comprehensive database. This extensive database is then refined into a smaller, more relevant dataset using the Metanovo tool.

name:clinicalMP
Details

MetaProSIP OpenMS 2.8

Automated inference of stable isotope incorporation rates in proteins for functional metaproteomics

Details

Segmentation and counting of cell nuclei in fluorescence microscopy images

This workflow performs segmentation and counting of cell nuclei using fluorescence microscopy images. The segmentation step is performed using Otsu thresholding (Otsu, 1979). The workflow is based on the tutorial: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/imaging-introduction/tutorial.html

Details

bacterial_genome_annotation

Annotation of an assembled bacterial genomes to detect genes, potential plasmids, integrons and Insertion sequence (IS) elements.

GenomicsfastaABRomicsbacterial-genomicsAnnotationgenome-annotation
Details

amr_gene_detection

Antimicrobial resistance gene detection from assembled bacterial genomes

fastaGenomicsABRomicsantibiotic-resistanceantimicrobial-resistance-genesantimicrobial resistancebacterial-genomicsAMRAMR-detection
Details

Gene-based Pathogen Identification

Nanopore datasets analysis - Phylogenetic Identification - antibiotic resistance genes detection and contigs building

name:Collectionname:PathoGFAIRname:IWCname:microGalaxy
Details

Pathogen Detection PathoGFAIR Samples Aggregation and Visualisation

Pathogens of all samples report generation and visualization

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Allele-based Pathogen Identification

Microbiome - Variant calling and Consensus Building

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Nanopore Preprocessing

Microbiome - QC and Contamination Filtering

name:Collectionname:microGalaxyname:PathoGFAIRname:Nanoporename:IWC
Details

Taxonomy Profiling and Visualization with Krona

Microbiome - Taxonomy Profiling

name:Collectionname:microGalaxyname:PathoGFAIRname:IWC
Details

Parallel Accession Download

Downloads fastq files for sequencing run accessions provided in a text file using fasterq-dump. Creates one job per listed run accession.

Details

sra_manifest_to_concatenated_fastqs_parallel

This workflow takes as input a SRA_manifest from SRA Run Selector and will generate one fastq file or fastq pair of file for each experiment (concatenated multiple runs if necessary). Output will be relabelled to match the column specified by the user.

Details

Differential gene expression for single-cell data using pseudo-bulk counts with edgeR

This workflow uses the decoupler tool in Galaxy to generate pseudobulk counts from an annotated AnnData file obtained from scRNA-seq analysis. Following the pseudobulk step, differential expression genes (DEG) are calculated using the edgeR tool. The workflow also includes data sanitation steps to ensure smooth operation of edgeR and minimizing potential issues. Additionally, a Volcano plot tool is used to visualize the results after the DEG analysis.

Details

scRNA-seq_preprocessing_10X_cellPlex

This workflow processes the CMO fastqs with CITE-seq-Count and include the translation step required for cellPlex processing. In parallel it processes the Gene Expresion fastqs with STARsolo, filter cells with DropletUtils and reformat all outputs to be easily used by the function 'Read10X' from Seurat.

#single-cell
Details

scRNA-seq_preprocessing_10X_v3_Bundle

This workflow processes the Gene Expresion fastqs with STARsolo, filter cells with DropletUtils and reformat all outputs to be easily used by the function 'Read10X' from Seurat.

#single-cell
Details

Velocyto-on10X-from-bundled

Run velocyto to get loom with counts of spliced and unspliced. It will extract the 'barcodes' from the bundled outputs.

name:single-cell
Details

Velocyto-on10X-filtered-barcodes

Run velocyto to get loom with counts of spliced and unspliced

name:single-cell
Details

baredSC_1d_logNorm

Run baredSC in 1 dimension in logNorm for 1 to N gaussians and combine models.

Details

baredSC_2d_logNorm

Run baredSC in 2 dimensions in logNorm for 1 to N gaussians and combine models.

Details

COVID-19: variation analysis of ARTIC ONT data

This workflow for ONT-sequenced ARTIC data is modeled after the alignment/variant-calling steps of the [ARTIC pipeline](https://artic.readthedocs.io/en/latest/). It performs, essentially, the same steps as that pipeline’s minion command, i.e. read mapping with minimap2 and variant calling with medaka. Like the Illumina ARTIC workflow it uses ivar for primer trimming. Since ONT-sequenced reads have a much higher error rate than Illumina-sequenced reads and are therefor plagued more by false-positive variant calls, this workflow does make no attempt to handle amplicons affected by potential primer-binding site mutations.

COVID-19ARTICONTcovid19.galaxyproject.org
Details

SARS-CoV-2 Illumina Amplicon pipeline - iVar based

Find and annotate variants in ampliconic SARS-CoV-2 Illumina sequencing data and classify samples with pangolin and nextclade

COVID-19ARTICiwc
Details

COVID-19: variation analysis on WGS SE data

This workflows performs single end read mapping with bowtie2 followed by sensitive variant calling across a wide range of AFs with lofreq

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis reporting

This workflow takes a VCF dataset of variants produced by any of the *-variant-calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates tabular lists of variants by Samples and by Variant, and an overview plot of variants and their allele-frequencies.

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis on ARTIC PE data

The workflow for Illumina-sequenced ARTIC data builds on the RNASeq workflow for paired-end data using the same steps for mapping and variant calling, but adds extra logic for trimming ARTIC primer sequences off reads with the ivar package. In addition, this workflow uses ivar also to identify amplicons affected by ARTIC primer-binding site mutations and tries to exclude reads derived from such tainted amplicons when calculating allele-frequencies of other variants.

COVID-19ARTICcovid19.galaxyproject.org
Details

COVID-19: consensus construction

Build a consensus sequence from FILTER PASS variants with intrasample allele-frequency above a configurable consensus threshold. Hard-mask regions with low coverage (but not consensus variants within them) and ambiguous sites.

COVID-19covid19.galaxyproject.org
Details

COVID-19: variation analysis on WGS PE data

This workflows performs paired end read mapping with bwa-mem followed by sensitive variant calling across a wide range of AFs with lofreq

COVID-19covid19.galaxyproject.orgiwcemergen_validated
Details

dcTMD calculations with GROMACS

Perform dcTMD free energy simulations and calculations

Details

Fragment-based virtual screening using rDock for docking and SuCOS for pose scoring

Virtual screening of the SARS-CoV-2 main protease with rDock and pose scoring

Details

MMGBSA calculations with GROMACS

MMGBSA simulation and calculation

Details

Create GRO and TOP complex files

Details

Quality and Contamination Control For Genome Assembly

Short paired-end read analysis to provide quality analysis, read cleaning and taxonomy assignation

Genomicsfastqbacterial-genomicstaxonomy-assignmentpaired-endqualityABRomicstrimming
Details

Assembly polishing with long reads

Racon polish with long reads, x4

Details

Bacterial Genome Assembly using Shovill

Assembly of bacterial paired-end short read data with generation of quality metrics and reports

fastqGenomicsbacterial-genomicspaired-endassemblyqualityABRomics
Details

Genome assembly with Flye

Assemble long reads with Flye, then view assembly statistics and assembly graph

Details

Average Bigwig between replicates

We assume the identifiers of the input list are like: sample_name_replicateID. @@ -52,7 +52,7 @@ sample_name

Details

Get Confident Peaks From ChIP_SR replicates

This workflow takes as input SR BAM from ChIP-seq. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using all subsets combined. Only peaks called using a combination of all subsets which have summits intersecting the intersection of at least x replicates will be kept.

ATAC-seq
Details

Get Confident Peaks From ChIP_PE replicates

This workflow takes as input PE BAM from ChIP-seq. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using all subsets combined. Only peaks called using a combination of all subsets which have summits intersecting the intersection of at least x replicates will be kept.

ATAC-seq
Details

Get Confident Peaks From ATAC or CUTandRUN replicates

This workflow takes as input BAM from ATAC-seq or CUT&amp;RUN. It calls peaks on each replicate and intersect them. In parallel, each BAM is subsetted to smallest number of reads. Peaks are called using all subsets combined. Only peaks called using a combination of all subsets which have summits intersecting the intersection of at least x replicates will be kept.

ATAC-seq
Details

ChIPseq_SR

This workflow takes as input a collection of fastqs (single reads). Remove adapters with cutadapt, map with bowtie2. Keep MAPQ30. MACS2 for bam with fixed extension or model.

ChIP
Details

ATACseq

This workflow takes as input a collection of paired fastq. It will remove bad quality and adapters with cutadapt. Map with Bowtie2 end-to-end. Will remove reads on MT and unconcordant pairs and pairs with mapping quality below 30 and PCR duplicates. Will compute the pile-up on 5' +- 100bp. Will call peaks and count the number of reads falling in the 1kb region centered on the summit. Will compute 2 normalization for coverage: normalized by million reads and normalized by million reads in peaks. Will plot the number of reads for each fragment length.

ATACseq
Details

CUTandRUN

This workflow take as input a collection of paired fastq. Remove adapters with cutadapt, map pairs with bowtie2 allowing dovetail. Keep MAPQ30 and concordant pairs. BAM to BED. MACS2 with "ATAC" parameters.

CUTnRUN
Details

ChIPseq_PE

This workflow takes as input a collection of paired fastqs. Remove adapters with cutadapt, map pairs with bowtie2. Keep MAPQ30 and concordant pairs. MACS2 for paired bam.

ChIP
Details

Hi-C_fastqToCool_hicup_cooler

This workflow takes as input a collection of paired fastq. It uses HiCUP to go from fastq to validPair file using the middle of the fragment as coordinates. The pairs are filtered for MAPQ and sorted by cooler to generate a tabix dataset. Cooler is used to generate a balanced cool file to the desired resolution.

Hi-C
Details

cHi-C_fastqToCool_hicup_cooler

This workflow take as input a collection of paired fastq. It uses HiCUP to go from fastq to validPair file. The pairs are filtered for MAPQ and for the region captured. Then, they are sorted by cooler to generate a tabix dataset. Cooler is used to generate a balanced cool file to the desired resolution.

Hi-C
Details

Hi-C_juicermediumtabixToCool_cooler

This workflow uses as input a collection of juicer medium tabix files and a genome name. It builds balanced cool file to the desired resolution.

Hi-C
Details

Hi-C_fastqToPairs_hicup

This workflow takes as input a collection of paired fastq. It uses HiCUP to go from fastq to validPair file. First truncate the fastq using the cutting sequence to guess the fill-in. Then map the truncated fastq. Then asign to fragment and filter the self-ligated and dandling ends or internal (it can also filter for the size). Then it removes the duplicates. Convert the output to be compatible with juicebox or cooler using the middle of the fragment as coordinates. Finally filter for mapping quality

Hi-C
Details

RNA-seq for Single-read fastqs

This workflow takes as input a list of single-end fastqs. Adapters and bad quality bases are removed with fastp. Reads are mapped with STAR with ENCODE parameters and genes are counted simultaneously as well as normalized coverage (per million mapped reads) on uniquely mapped reads. The counts are reprocessed to be similar to HTSeq-count output. Alternatively, featureCounts can be used to count the reads/fragments per gene. FPKM are computed with cufflinks and/or with StringTie. The unstranded normalized coverage is computed with bedtools.

RNAseqtranscriptomics
Details

Goseq GO-KEGG Enrichment Analysis

This workflow is used for GO and KEGG enrichment analysis using GOseq tools.

Details

BREW3R

This workflow takes a collection of BAM (output of STAR) and a gtf. It extends the input gtf using de novo annotation.

Details

RNAseq_DE_filtering_plotting

This workflow can only work on an experimental setup with exactly 2 conditions. It takes two collections of count tables as input and performs differential expression analysis. Additionally it filters for DE genes based on adjusted p-value and log2 fold changes thresholds. It also generates informative plots.

transcriptomicsRNAseq
Details

RNA-seq for Paired-end fastqs

This workflow takes as input a list of paired-end fastqs. Adapters and bad quality bases are removed with fastp. Reads are mapped with STAR with ENCODE parameters and genes are counted simultaneously as well as normalized coverage (per million mapped reads) on uniquely mapped reads. The counts are reprocessed to be similar to HTSeq-count output. Alternatively, featureCounts can be used to count the reads/fragments per gene. FPKM are computed with cufflinks and/or with StringTie. The unstranded normalized coverage is computed with bedtools. -

RNAseqtranscriptomics
Details

Pox Virus Illumina Amplicon Workflow from half-genomes

A workflow for the analysis of pox virus genomes sequenced as half-genomes (for ITR resolution) in a tiled-amplicon approach

poxvirology
Details

kmer-profiling-hifi-VGP1

ReviewedVGP
Details

Assembly-decontamination-VGP9

VGP_curated
Details

Purge-duplicate-contigs-VGP6

Purge contigs marked as duplicates by purge_dups (could be haplotypic duplication or overlap duplication). This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps (Workflow 3, 4, or 5)

VGP_curated
Details

Purging-duplicates-one-haplotype-VGP6b

VGP_curated
Details

Scaffolding-BioNano-VGP7

VGP_curated
Details

kmer-profiling-hifi-trio-VGP2

Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.

ReviewedVGP
Details

Generate Nx and Size plots for multiple assemblies

Details

Assembly-Hifi-HiC-phasing-VGP4

VGPReviewed
Details

Assembly-Hifi-Trio-phasing-VGP5

VGPReviewed
Details

Scaffolding with Hi-C data VGP8

Scaffolding using HiC data with YAHS.

VGP_curated
Details

Mitogenome-Assembly-VGP0

ReviewedVGP
Details

Assembly-Hifi-only-VGP3

VGPReviewed
Details

Paired end variant calling in haploid system

Workflow for variant analysis against a reference genome in GenBank format

genericVeuPathHaploid
Details

Generic variation analysis on WGS PE data

Workflow for variant analysis against a reference genome in GenBank format

mpxvgeneric
Details

Generic variation analysis reporting

This workflow takes a VCF dataset of variants produced by any of the variant calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates tabular lists of variants by Samples and by Variant, and an overview plot of variants and their allele-frequencies.

mpvxgeneric
Details

dada2 amplicon analysis pipeline - for paired end data

dada2 amplicon analysis for paired end data +

RNAseqtranscriptomics
Details

Pox Virus Illumina Amplicon Workflow from half-genomes

A workflow for the analysis of pox virus genomes sequenced as half-genomes (for ITR resolution) in a tiled-amplicon approach

poxvirology
Details

kmer-profiling-hifi-VGP1

ReviewedVGP
Details

Assembly-decontamination-VGP9

VGP_curated
Details

Purge-duplicate-contigs-VGP6

Purge contigs marked as duplicates by purge_dups (could be haplotypic duplication or overlap duplication). This workflow is the 6th workflow of the VGP pipeline. It is meant to be run after one of the contigging steps (Workflow 3, 4, or 5)

VGP_curated
Details

Purging-duplicates-one-haplotype-VGP6b

VGP_curated
Details

Scaffolding-BioNano-VGP7

VGP_curated
Details

kmer-profiling-hifi-trio-VGP2

Create Meryl Database used for the estimation of assembly parameters and quality control with Merqury. Part of the VGP pipeline.

ReviewedVGP
Details

Generate Nx and Size plots for multiple assemblies

Details

Assembly-Hifi-HiC-phasing-VGP4

VGPReviewed
Details

Assembly-Hifi-Trio-phasing-VGP5

VGPReviewed
Details

Scaffolding with Hi-C data VGP8

Scaffolding using HiC data with YAHS.

VGP_curated
Details

Mitogenome-Assembly-VGP0

ReviewedVGP
Details

Assembly-Hifi-only-VGP3

VGPReviewed
Details

Paired end variant calling in haploid system

Workflow for variant analysis against a reference genome in GenBank format

genericVeuPathHaploid
Details

Generic variation analysis on WGS PE data

Workflow for variant analysis against a reference genome in GenBank format

mpxvgeneric
Details

Generic variation analysis reporting

This workflow takes a VCF dataset of variants produced by any of the variant calling workflows in https://github.com/galaxyproject/iwc/tree/main/workflows/sars-cov-2-variant-calling and generates tabular lists of variants by Samples and by Variant, and an overview plot of variants and their allele-frequencies.

mpvxgeneric
Details

dada2 amplicon analysis pipeline - for paired end data

dada2 amplicon analysis for paired end data The workflow has three main outputs: - the sequence table (output of makeSequenceTable) @@ -65,5 +65,5 @@ https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/gcms/tutorial.html

metabolomicsMSworkflow4metabolomicsGC-MSGTNmetaMS
Details

Mass spectrometry: LC-MS preprocessing with XCMS

This workflow is composed with the XCMS tool R package (Smith, C.A. 2006) able to extract, filter, align and fill gapand the possibility to annotate isotopes, adducts and fragments using the CAMERA R package (Kuhl, C 2012). -https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html

metabolomicsMSLC-MSworkflow4metabolomicsxcmsGTN
Details

Repeat masking with RepeatModeler and RepeatMasker

Details
- \ No newline at end of file +https://training.galaxyproject.org/training-material/topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html

metabolomicsMSLC-MSworkflow4metabolomicsxcmsGTN
Details

Repeat masking with RepeatModeler and RepeatMasker

Details
+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json index 058e7f107..3b941e1ea 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777485] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534841] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html index 1bf11b330..dad648932 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-HiC-phasing-VGP4%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json index ac3acfd94..a449ad073 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777491] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534843] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html index 2defa8893..f7c413c5b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-Trio-phasing-VGP5%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json index f53b04b65..667399abb 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777515] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534856] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html index 514de6297..229d95e07 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-Hifi-only-VGP3%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json index 1bb24a79e..7d2064dc6 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777452] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534800] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html index 088f6a9b5..38b6a8b78 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FAssembly-decontamination-VGP9%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/_payload.json index e6cfb515c..2543b374d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777513] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534854] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/index.html index 91429656b..767c19e10 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FMitogenome-assembly-VGP0%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/_payload.json index 47843af4f..2664aadd3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777483] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534833] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/index.html index a604efa95..48014c0f1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPlot-Nx-Size%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json index 8b1e0da6f..435a2a48f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777454] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534802] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html index d25fb93b4..31d996b74 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicate-contigs-VGP6%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json index c0a07b2c0..214f4705d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777456] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534804] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html index 720994d93..12c09aaf2 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FPurge-duplicates-one-haplotype-VGP6b%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json index eec1e44e1..ea8ea6026 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777466] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534816] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html index bedf1bd60..4f11bfdcd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-Bionano-VGP7%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json index 3175cd83f..ecfa1a0db 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777499] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534852] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html index 419a46b58..e9eb1e084 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2FScaffolding-HiC-VGP8%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json index 40ed453cd..10890cd81 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777176] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534521] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html index 22584e878..b6f9440d7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fallele-based-pathogen-identification%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json index 1d82fd46d..0ef675b51 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777172] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534517] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html index bb3d2e3f1..7c6731455 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Famr_gene_detection%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json index 54f8936a7..55a07aae4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777358] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534697] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html index e289b5787..502d15873 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fassembly-with-flye%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json index 07f68d955..58f5e6637 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777378] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534721] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html index 0a102d2b5..6a53dc5a8 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fatacseq%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json index c258f6ee1..c59d2089d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777360] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534699] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html index 093e95344..9deb41799 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Faverage-bigwig-between-replicates%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json index 844f7d527..f612e02b3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777355] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534695] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html index 7c91b47d3..964033826 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial-genome-assembly%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json index c057688eb..1681f415b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777171] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534516] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html index 66ab667b4..5ee4bb28b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbacterial_genome_annotation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json index 5a93dedf1..cf034e018 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777271] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534613] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html index 1726e67ed..8b5265be4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-1d-logNorm/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json index 04d99f898..52a9acae7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777273] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534615] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html index a6155c2e1..e608b5380 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbaredsc%2FbaredSC-2d-logNorm/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/_payload.json index 8d713aed8..2514211e0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777438] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534779] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/index.html index a6c53a145..5f79cdb4f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fbrew3r%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/_payload.json index 4a05a320c..cb46828e6 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777383] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534725] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/index.html index c6ea6d420..b8d2b391f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/_payload.json index 81837793f..949fee7b8 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777376] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534719] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/index.html index 4487faae1..2be59b2ff 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fchipseq-sr%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-data-interpretation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-data-interpretation%2Fmain/_payload.json index 17a48f096..5f891b0e2 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-data-interpretation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-data-interpretation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777153] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534504] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-data-interpretation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-data-interpretation%2Fmain/index.html index 2098e0ce2..48f56acdf 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-data-interpretation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-data-interpretation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/_payload.json index 2208d1a59..5a4e197df 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777159] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534511] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/index.html index 6a22e4035..a22ed9512 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-database-generation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/_payload.json index 821e95030..615ecc9a9 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777157] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534509] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/index.html index 2cfb87dff..109b4a503 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-quantitation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-verification%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-verification%2Fmain/_payload.json index 1c0d68bf6..446589a68 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-verification%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-verification%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777155] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534507] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-verification%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-verification%2Fmain/index.html index cdaddeeb1..4279fff3f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-verification%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fclinicalmp-verification%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/_payload.json index 6911090e5..89773bf78 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777366] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534717] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/index.html index 9ce4575d8..1deb5762d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-atac-cutandrun/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/_payload.json index e45833e8f..3b414cc3d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777364] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534705] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/index.html index 07723f038..207250900 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/_payload.json index 8eb77c94b..4960c7edd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777362] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534702] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/index.html index 757aab678..e4e1f2d76 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fconsensus-peaks%2Fconsensus-peaks-chip-sr/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json index 84ef8e0c6..ef1ef8c93 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777381] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534723] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html index 88553fe76..e99a7aac8 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fcutandrun%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json index 7e0e477fd..614159600 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777526] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534871] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html index a386d4995..b1623d30b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fdada2%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/_payload.json index 5168e9791..387657ed7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777254] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534596] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/index.html index 3ede88780..5f4f4b1c4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-cellplex/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/_payload.json index 2cee5996b..14de063a4 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777256] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534606] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/index.html index 39aaebdd7..ce05b44f5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffastq-to-matrix-10x%2Fscrna-seq-fastq-to-matrix-10x-v3/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json index 6ace3e492..05e67411d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777170] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534515] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html index a3d8c4f55..c0daa54b7 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffluorescence-nuclei-segmentation-and-counting%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json index 0831e6153..502bc1587 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777301] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534644] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html index 2c21931a0..329faf82d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ffragment-based-docking-scoring%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/_payload.json index 80f69bca8..201ccca52 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777576] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534929] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/index.html index a6869c56a..28935d6da 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgcms-metams%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json index 5acc87e40..24f227af3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777174] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534518] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html index 008553821..7bc05d6e3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgene-based-pathogen-identification%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json index 74f3c471a..e3d5c4878 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777518] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534860] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html index 8cb47b8dc..8fb644c6d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgeneric-variant-calling-wgs-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json index 4d2f77202..2fd5c50f9 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777436] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534777] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html index b5322b56d..ebc474d07 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgoseq%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json index 9d597d354..0cba7eb07 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777299] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534637] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html index 31a510f28..405e4112c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-dctmd%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json index 11ce90ab8..331150047 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777306] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534667] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html index 69e7a12b9..88fb2da9a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fgromacs-mmgbsa%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json index 7bd3a2c5e..3752de781 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777517] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534858] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html index d59841522..25f5b2f70 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhaploid-variant-calling-wgs-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json index e4ae4b6d7..95da9139f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777391] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534749] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html index 8c5c6fbef..d1c070aa6 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fchic-fastq-to-cool-hicup-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json index 41ca57709..ea18e257b 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777385] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534740] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html index aa3085fab..2c6cb551c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-cool-hicup-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json index 4fd6c2972..12e514898 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777422] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534772] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html index 7e68e413b..4590e3c18 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-fastq-to-pairs-hicup/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json index 83dc56c27..56157b311 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777401] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534757] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html index 75c777ea1..2d910d539 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fhic-hicup-cooler%2Fhic-juicermediumtabix-to-cool-cooler/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json index bf071ba26..d89a71b83 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777446] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534798] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html index c3f98df0c..7d8c9d213 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-VGP1%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json index fb2ec1742..b20116434 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777469] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534820] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html index 4404abeb8..23015ed72 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fkmer-profiling-hifi-trio-VGP2%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json index d697ec721..33f38c3b2 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777584] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534932] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html index 3ea1a52c0..642d712b5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Flcms-preprocessing%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json index e987ac7ed..c75c330d1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777178] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534523] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html index 9d13e2c76..8d7eeb509 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fnanopore-pre-processing%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json index b3afddf8f..bc4ad0b60 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777168] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534513] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html index 660c1dc0e..39d9a3b9c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fopenms-metaprosip%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json index 1f79dc04b..d4f6e828c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777182] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534526] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html index 094997b1d..c56bfefbf 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fparallel-accession-download%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json index cba2d5e56..595fd9fe3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777175] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534520] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html index a566b6611..90f00a4d3 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpathogen-detection-pathogfair-samples-aggregation-and-visualisation%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json index 1e96b3001..129ad393c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777348] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534693] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html index 5efa1bf75..6d06acd5c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpolish-with-long-reads%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json index c18af676f..7094ebbb1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777444] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534785] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html index 51461b360..9880c47a0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpox-virus-amplicon%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json index 299fe4413..c6a6a8f8f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777343] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534688] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html index bb4a7dbce..431cab69e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fprotein-ligand-complex-parameterization%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json index 7bc994b9e..7ab84bcfd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777186] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534531] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html index 7e13646b8..2b956e03a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fpseudobulk-worflow-decoupler-edger%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json index 872f992ff..dc4b5edef 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777532] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534877] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html index 7b2a84326..91c8b1a10 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIa-import-multiplexed-se/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json index 14efce28f..9641228ae 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777549] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534890] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html index cbe6d572e..86b16e48e 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIb-import-multiplexed-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json index d2d35c13c..9aaaf5c77 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777553] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534893] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html index 958803b79..2d5ba7f68 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FIc-import-demultiplexed-se/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json index 6683caadd..7ad144c7c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777556] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534901] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html index cd174383d..bef909e18 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-I-import%2FId-import-demultiplexed-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/_payload.json index 2d976e1b1..3f48b0cbf 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777528] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534873] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/index.html index 627fa355f..535bb3828 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIa-denoising-se/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/_payload.json index 9522e0b9f..7fb748c7d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777530] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534875] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/index.html index 204a1a5dd..430ecf37d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-II-denoising%2FIIb-denoising-pe/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/_payload.json index a4d3fe8c4..4df9966ab 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777558] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534914] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/index.html index 7b0062226..32b515679 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-III-V-Phylogeny-Rarefaction-Taxonomic-Analysis/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/_payload.json index e8c3b3bbe..ded3268c5 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777568] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534917] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/index.html index 6ceedd9b8..7b4d24ba1 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fqiime2-III-VI-downsteam%2FQIIME2-VI-diversity-metrics-and-estimations/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/_payload.json index a2120f0c6..4b282cb15 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777346] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534690] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/index.html index bc8518038..7605eaddb 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fquality-and-contamination-control%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/_payload.json index 02ef6f0d9..51d44a12a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777586] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534934] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/index.html index 6f11bedc4..0b480b7b9 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frepeatmasking%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/_payload.json index ba16b162a..69fccd3df 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777440] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534781] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/index.html index 4e5f040c1..8215bb15a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-de%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/_payload.json index 454c6d1b0..8906ecfde 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777442] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534783] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/index.html index 5560d415a..839babdc0 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-pe%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/_payload.json index 2c1354680..e61b55c6a 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777425] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534775] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/index.html index 78f2cbac2..f11da8bce 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Frnaseq-sr%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/_payload.json index 0522dc820..9e7a1b895 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777295] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534633] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/index.html index dc08a8910..b71eefefb 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-consensus-from-variation%2FCOVID-19-CONSENSUS-CONSTRUCTION/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json index b647c7a77..3376fda39 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777275] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534617] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html index cb37a1b29..d06f14eed 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-ont-artic-variant-calling%2FCOVID-19-ARTIC-ONT/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/_payload.json index d4cac46bc..2e91d7772 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777283] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534619] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/index.html index a682d06b0..66b78d419 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-ivar-analysis%2FSARS-COV-2-ILLUMINA-AMPLICON-IVAR-PANGOLIN-NEXTCLADE/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/_payload.json index 330e3afc9..86b5569fe 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777289] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534631] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/index.html index 588584e6d..c0918a90f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-artic-variant-calling%2FCOVID-19-PE-ARTIC-ILLUMINA/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json index 8a214cc8a..b48145cb2 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777297] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534635] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html index 4f4495dcb..a388738bd 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-pe-illumina-wgs-variant-calling%2FCOVID-19-PE-WGS-ILLUMINA/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json index 659be893b..f0f444a38 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777285] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534621] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html index 04a96f1e2..573139603 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-se-illumina-wgs-variant-calling%2FCOVID-19-SE-WGS-ILLUMINA/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json index cc0361b46..6e91b541d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777287] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534623] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html index 814532321..b183cb19c 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsars-cov-2-variation-reporting%2FCOVID-19-VARIATION-REPORTING/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json index 13b1725fd..2af389d60 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777183] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534528] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html index be5a9126d..21d4fa191 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fsra-manifest-to-concatenated-fastqs%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json index c6f168771..e35257394 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777180] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534525] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html index 4cba8a9c1..a9f171083 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Ftaxonomy-profiling-and-visualization-with-krona%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json index 73ad057ec..0639cce87 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777520] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534862] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html index ff3c19b85..a5fab7b46 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvariation-reporting%2Fmain/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json index 8bb8800e8..007dcb970 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777269] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534610] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html index 948a5993c..8778a773f 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-filtered-barcodes/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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IWC Logo Galaxy IWC - Workflow Library
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+ \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json index de042e755..e8c2b2648 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/_payload.json @@ -1 +1 @@ -[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733250777266] \ No newline at end of file +[{"data":1,"prerenderedAt":3},["Reactive",2],{},1733254534608] \ No newline at end of file diff --git a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html index 18b9b73ad..3bbcb952d 100644 --- a/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html +++ b/workflow/%23workflow%2Fgithub.com%2Fiwc-workflows%2Fvelocyto%2FVelocyto-on10X-from-bundled/index.html @@ -34,17 +34,17 @@ } - + - - - + + + - - - - -
IWC Logo Galaxy IWC - Workflow Library
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- \ No newline at end of file + + + + +
IWC Logo Galaxy IWC - Workflow Library
Contribute GitHub
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+ \ No newline at end of file diff --git a/workflow_manifest.json b/workflow_manifest.json index e35a865a9..e638787c1 100644 --- a/workflow_manifest.json +++ b/workflow_manifest.json @@ -81924,7 +81924,7 @@ ], "format-version": "0.1", "license": "CC-BY-4.0", - "release": "0.2", + "release": "0.3", "name": "Assembly-Hifi-Trio-phasing-VGP5", "report": { "markdown": "\n# Workflow Execution Report\n\nTime workflow was invoked:\n\n```galaxy\ninvocation_time()\n```\nGalaxy version :\n\n```galaxy\ngenerate_galaxy_version()\n```\n\n## Raw unitig graph\n\n```galaxy\nhistory_dataset_as_image(output=\"raw unitig graph image\")\n```\n\n## Merqury results\n\n### Merqury QV\n\n```galaxy\nhistory_dataset_as_table(output=merqury_stats)\n```\n\n### Merqury completeness\n\n```galaxy\nhistory_dataset_as_table(output=\"merqury_stats\")\n```\n\n### Merqury plots\n\n\nspectra-cn:\n\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.spectra-cn.fl\")\n```\n\nspectra-asm:\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.spectra-asm.fl\")\n```\n\n\nhap1 spectra-cn:\n\n\r\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.assembly_01.spectra-cn.fl\")\n```\r\n\n\nhap2 spectra-cn:\n\n```galaxy\nhistory_dataset_as_image(output=\"output_merqury.assembly_02.spectra-cn.fl\")\n```\n\n## BUSCO results (Vertebrata database)\n\nHap1\n\n```galaxy\nhistory_dataset_as_image(output=\"Busco Summary Image Hap1\")\n```\n\nHap2\n\n```galaxy\nhistory_dataset_as_image(output=\"Busco Summary Image Hap2\")\n```\n\n## Assembly statistics\n\n\n```galaxy\nhistory_dataset_as_table(output=\"clean_stats\")\n```\n\n\n## Nx and Size plots\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Nx Plot\")\n```\n\n\n```galaxy\nhistory_dataset_as_image(output=\"Size Plot\")\n```\n\n\n\n## Current Workflow\n```galaxy\nworkflow_display()\n```\n" @@ -82108,8 +82108,8 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 14.278967454027603, - "top": 893.0522085856591 + "left": 33.17695496536256, + "top": 890.2068997739406 }, "tool_id": null, "tool_state": "{\"default\": 37, \"parameter_type\": \"integer\", \"optional\": true}", @@ -82117,13 +82117,7 @@ "type": "parameter_input", "uuid": "a5987ed3-6fdb-49c7-92d0-5b2f78a9bbb9", "when": null, - "workflow_outputs": [ - { - "label": null, - "output_name": "output", - "uuid": "1bb5df96-d731-4e12-b902-ec6e1d723b07" - } - ] + "workflow_outputs": [] }, "7": { "annotation": "", @@ -82150,13 +82144,7 @@ "type": "parameter_input", "uuid": "ca553be3-e5c9-4770-bd61-d50ed05c69ae", "when": null, - "workflow_outputs": [ - { - "label": null, - "output_name": "output", - "uuid": "9829d67c-d793-44c9-9b53-9c3ebd2155a8" - } - ] + "workflow_outputs": [] }, "8": { "annotation": "Taxonomic lineage for the organism being assembled for Busco analysis", @@ -82183,13 +82171,7 @@ "type": "parameter_input", "uuid": "9762d451-eb6f-4f0c-8203-7094f46ea771", "when": null, - "workflow_outputs": [ - { - "label": null, - "output_name": "output", - "uuid": "9dff2868-bf8a-4443-87c9-52f5b8975bdb" - } - ] + "workflow_outputs": [] }, "9": { "annotation": "If empty, read coverage will be estimated from the Genomescope parameters. ", @@ -82216,13 +82198,7 @@ "type": "parameter_input", "uuid": "ffcf874f-594d-4d58-99dc-73ef566bcc88", "when": null, - "workflow_outputs": [ - { - "label": null, - "output_name": "output", - "uuid": "28a260f0-a63e-4743-ba41-6544e4f423a9" - } - ] + "workflow_outputs": [] }, "10": { "annotation": "GenomeScope model parameters generated by K-mer profiling workflow", @@ -82303,13 +82279,7 @@ "type": "parameter_input", "uuid": "eb8c0bcc-14c8-4b3d-b73f-442eae454b82", "when": null, - "workflow_outputs": [ - { - "label": null, - "output_name": "output", - "uuid": "b178a102-00b1-45ae-8404-2c7c544cdeee" - } - ] + "workflow_outputs": [] }, "13": { "annotation": "", @@ -82336,13 +82306,7 @@ "type": "data_input", "uuid": "80ff22ac-1a58-4f89-bf52-48f18d8f71f9", "when": null, - "workflow_outputs": [ - { - "label": null, - "output_name": "output", - "uuid": "c2cf45d3-af1d-49d6-9d77-41065f57fcdb" - } - ] + "workflow_outputs": [] }, "14": { "annotation": "", @@ -82369,13 +82333,7 @@ "type": "parameter_input", "uuid": "c5651e7e-31d4-41b7-a590-e2fadc7f59e9", "when": null, - "workflow_outputs": [ - { - "label": null, - "output_name": "output", - "uuid": "ad235ad6-b670-4423-ac52-bbec7296f64a" - } - ] + "workflow_outputs": [] }, "15": { "annotation": "", @@ -82402,13 +82360,7 @@ "type": "parameter_input", "uuid": "1ae103f4-38e9-4414-8e46-b8a763159937", "when": null, - "workflow_outputs": [ - { - "label": null, - "output_name": "output", - "uuid": "276bc5aa-1667-4b75-9dfa-52c1cea29d50" - } - ] + "workflow_outputs": [] }, "16": { "annotation": "", @@ -82485,9 +82437,48 @@ }, "17": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0", + "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.2.0", "errors": null, "id": 17, + "input_connections": { + "style_cond|type_cond|pick_from_0|value": { + "id": 6, + "output_name": "output" + } + }, + "inputs": [], + "label": null, + "name": "Pick parameter value", + "outputs": [ + { + "name": "integer_param", + "type": "expression.json" + } + ], + "position": { + "left": 523.0869347835544, + "top": 911.0977745488228 + }, + "post_job_actions": {}, + "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.2.0", + "tool_shed_repository": { + "changeset_revision": "b19e21af9c52", + "name": "pick_value", + "owner": "iuc", + "tool_shed": "toolshed.g2.bx.psu.edu" + }, + "tool_state": "{\"style_cond\": {\"pick_style\": \"first_or_default\", \"__current_case__\": 1, \"type_cond\": {\"param_type\": \"integer\", \"__current_case__\": 1, \"pick_from\": [{\"__index__\": 0, \"value\": {\"__class__\": \"ConnectedValue\"}}], \"default_value\": \"37\"}}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_version": "0.2.0", + "type": "tool", + "uuid": "707e7317-530b-4c47-8c3f-5037373b0e80", + "when": null, + "workflow_outputs": [] + }, + "18": { + "annotation": "", + "content_id": "toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1", + "errors": null, + "id": 18, "input_connections": { "input": { "id": 10, @@ -82514,25 +82505,25 @@ "output_name": "out_file1" } }, - 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{ - "name": "stats", - "type": "input" - }, { "name": "html_report", "type": "html" + }, + { + "name": "stats", + "type": "tabular" } ], "position": { @@ -82602,39 +82632,39 @@ "top": 79.2265625 }, "post_job_actions": {}, - "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1", + "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0", "tool_shed_repository": { - "changeset_revision": "abfd8a6544d7", + "changeset_revision": "f7e2f1eb3a16", "name": "multiqc", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"cutadapt\", \"__current_case__\": 5, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": false, \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "1.11+galaxy1", + "tool_state": "{\"comment\": \"\", \"export\": false, \"flat\": false, \"results\": [{\"__index__\": 0, \"software_cond\": {\"software\": \"cutadapt\", \"__current_case__\": 5, \"input\": {\"__class__\": \"ConnectedValue\"}}}], \"saveLog\": \"false\", \"title\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_version": "1.24.1+galaxy0", "type": "tool", "uuid": "b64b5b58-cf21-4fb6-af57-2e8a56e85142", "when": null, "workflow_outputs": [ - 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"changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -82711,14 +82741,14 @@ "when": null, "workflow_outputs": [] }, - "22": { + "24": { "annotation": "", "content_id": "param_value_from_file", "errors": null, - "id": 22, + "id": 24, "input_connections": { "input1": { - "id": 20, + "id": 22, "output_name": "out_file1" } }, @@ -82750,14 +82780,14 @@ "when": null, "workflow_outputs": [] }, - "23": { + "25": { "annotation": "", "content_id": "Convert characters1", "errors": null, - "id": 23, + "id": 25, "input_connections": { "input": { - "id": 21, + "id": 23, "output_name": "outfile" } }, @@ -82789,18 +82819,18 @@ "when": null, "workflow_outputs": [] }, - "24": { + "26": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/pick_value/pick_value/0.2.0", "errors": null, - "id": 24, + "id": 26, "input_connections": { "style_cond|type_cond|pick_from_0|value": { "id": 9, "output_name": "output" }, "style_cond|type_cond|pick_from_1|value": { - "id": 22, + "id": 24, "output_name": "integer_param" } }, @@ -82840,14 +82870,14 @@ "when": null, "workflow_outputs": [] }, - "25": { + "27": { "annotation": "", "content_id": "Cut1", "errors": null, - "id": 25, + "id": 27, "input_connections": { "input": { - "id": 23, + "id": 25, "output_name": "out_file1" } }, @@ -82879,27 +82909,27 @@ "when": null, "workflow_outputs": [] }, - "26": { + "28": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0", + "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.20.0+galaxy0", "errors": null, - "id": 26, + "id": 28, "input_connections": { "assembly_options|hom_cov": { - "id": 24, + "id": 26, "output_name": "integer_param" }, "filter_bits": { - "id": 6, - "output_name": "output" + "id": 17, + "output_name": "integer_param" }, "mode|reads": { "id": 16, "output_name": "out1" }, "mode|trio_dual": { - "id": 12, - "output_name": "output" + "id": 20, + "output_name": "boolean_param" }, "mode|trioinput|hap1_reads": { "id": 1, @@ -82987,28 +83017,28 @@ "output_name": "raw_unitigs_trio" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.20.0+galaxy0", "tool_shed_repository": { - "changeset_revision": "284a1cb82b61", + "changeset_revision": "5161f204ba63", "name": "hifiasm", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"advanced_options\": {\"advanced_selector\": \"blank\", \"__current_case__\": 0}, \"assembly_options\": {\"assembly_selector\": \"set\", \"__current_case__\": 1, \"cleaning_rounds\": \"4\", \"adapter_length\": \"0\", \"pop_contigs\": \"10000000\", \"pop_unitigs\": \"100000\", \"remove_tips\": \"3\", \"max_overlap\": \"0.8\", \"min_overlap\": \"0.2\", \"disable_post_join\": false, \"ignore_error_corrected\": false, \"hom_cov\": {\"__class__\": \"ConnectedValue\"}}, \"bins_out\": false, \"filter_bits\": {\"__class__\": \"ConnectedValue\"}, \"hic_partition\": {\"hic_partition_selector\": \"blank\", \"__current_case__\": 0}, \"log_out\": true, \"mode\": {\"mode_selector\": \"trio\", \"__current_case__\": 1, \"reads\": {\"__class__\": \"ConnectedValue\"}, \"trioinput\": {\"trio_input_selector\": \"reads\", \"__current_case__\": 0, \"hap1_reads\": {\"__class__\": \"ConnectedValue\"}, \"hap2_reads\": {\"__class__\": \"ConnectedValue\"}}, \"max_kmers\": \"2\", \"min_kmers\": \"5\", \"yak_kmer_length\": \"31\", \"trio_dual\": {\"__class__\": \"ConnectedValue\"}}, \"ont_integration\": {\"ont_integration_selector\": \"blank\", \"__current_case__\": 0}, \"purge_options\": {\"purge_selector\": \"blank\", \"__current_case__\": 0}, \"scaffolding_options\": {\"scaffold_selector\": \"blank\", \"__current_case__\": 0}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "0.19.9+galaxy0", + "tool_version": "0.20.0+galaxy0", "type": "tool", "uuid": "50aee4e7-5172-49a0-a448-4020942301af", "when": null, "workflow_outputs": [] }, - "27": { + "29": { "annotation": "", "content_id": "param_value_from_file", "errors": null, - "id": 27, + "id": 29, "input_connections": { "input1": { - "id": 25, + "id": 27, "output_name": "out_file1" } }, @@ -83055,14 +83085,14 @@ } ] }, - "28": { + "30": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0", + "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy0", "errors": null, - "id": 28, + "id": 30, "input_connections": { "input_file": { - "id": 26, + "id": 28, "output_name": "hap1_contigs" }, "mode_condition|swiss_army_knife": { @@ -83099,15 +83129,15 @@ "output_name": "output" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy0", "tool_shed_repository": { - 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"43": { + "45": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1", "errors": null, - "id": 43, + "id": 45, "input_connections": { "infile": { - "id": 36, + "id": 38, "output_name": "stats" } }, @@ -84814,7 +84844,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -84826,14 +84856,14 @@ "when": null, "workflow_outputs": [] }, - "44": { + "46": { "annotation": "", "content_id": "__EXTRACT_DATASET__", "errors": null, - "id": 44, + "id": 46, "input_connections": { "input": { - "id": 39, + "id": 41, "output_name": "qv_files" } }, @@ -84871,14 +84901,14 @@ } ] }, - "45": { + "47": { "annotation": "", "content_id": "__EXTRACT_DATASET__", "errors": null, - "id": 45, + "id": 47, "input_connections": { "input": { - "id": 39, + "id": 41, "output_name": "png_files" } }, @@ -84916,14 +84946,14 @@ } ] }, - "46": { + "48": { "annotation": "", "content_id": "__EXTRACT_DATASET__", "errors": null, - "id": 46, + "id": 48, "input_connections": { "input": { - "id": 39, + "id": 41, "output_name": "png_files" } }, @@ -84961,14 +84991,14 @@ } ] }, - "47": { + "49": { "annotation": "", "content_id": "__EXTRACT_DATASET__", "errors": null, - "id": 47, + "id": 49, "input_connections": { "input": { - "id": 39, + "id": 41, "output_name": "png_files" } }, @@ -85006,14 +85036,14 @@ } ] }, - "48": { + "50": { "annotation": "", "content_id": "__EXTRACT_DATASET__", "errors": null, - "id": 48, + "id": 50, "input_connections": { "input": { - "id": 39, + "id": 41, "output_name": "png_files" } }, @@ -85051,14 +85081,14 @@ } ] }, - "49": { + "51": { "annotation": "", "content_id": "__EXTRACT_DATASET__", "errors": null, - "id": 49, + "id": 51, "input_connections": { "input": { - "id": 39, + "id": 41, "output_name": "stats_files" } }, @@ -85096,12 +85126,12 @@ } ] }, - "50": { + "52": { "annotation": "", - "id": 50, + "id": 52, "input_connections": { "Alternate data": { - "id": 41, + "id": 43, "input_subworkflow_step_id": 1, "output_name": "gfastats data for plotting" }, @@ -85116,7 +85146,7 @@ "output_name": "output" }, "Primary data": { - "id": 40, + "id": 42, "input_subworkflow_step_id": 0, "output_name": "gfastats data for plotting" } @@ -85408,7 +85438,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -85540,7 +85570,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1", "tool_shed_repository": { - "changeset_revision": "3b12bf9b4b87", + "changeset_revision": "5298e06f14f9", "name": "ggplot2_point", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -85600,7 +85630,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1", "tool_shed_repository": { - "changeset_revision": "3b12bf9b4b87", + "changeset_revision": "5298e06f14f9", "name": "ggplot2_point", "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -85620,47 +85650,37 @@ } }, "tags": [], - "uuid": "c0b11d93-b596-47ae-b5e1-7b67b4117a99" + "uuid": "b78e621c-7220-413c-bf73-7109f9bd1e62" }, "tool_id": null, "type": "subworkflow", "uuid": "bc14963b-acf4-4064-ad92-fbf7cad3730f", "when": null, "workflow_outputs": [ - { - "label": null, - "output_name": "2:output", - "uuid": "e9a8a219-63fb-40ef-a551-3b791b5df1aa" - }, - { - "label": "Size Plot", - "output_name": "Size Plot", - "uuid": "044f639b-f8f9-44b9-85b0-bbea417e4af7" - }, { "label": "Nx Plot", "output_name": "Nx Plot", "uuid": "4235c91f-2071-483e-b905-bed50bc53b05" }, { - "label": null, - "output_name": "3:output", - "uuid": "be5226ca-0fad-4887-967c-5ada802be18c" + "label": "Size Plot", + "output_name": "Size Plot", + "uuid": "044f639b-f8f9-44b9-85b0-bbea417e4af7" } ] }, - "51": { + "53": { "annotation": "", "content_id": "join1", "errors": null, - "id": 51, + "id": 53, "input_connections": { "input1": { - "id": 43, + "id": 45, "output_name": "outfile" }, "input2": { - "id": 42, + "id": 44, "output_name": "outfile" } }, @@ -85692,14 +85712,14 @@ "when": null, "workflow_outputs": [] }, - "52": { + "54": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1", + "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy2", "errors": null, - "id": 52, + "id": 54, "input_connections": { "input": { - "id": 51, + "id": 53, "output_name": "out_file1" } }, @@ -85732,15 +85752,15 @@ "output_name": "output" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy2", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"complement\": \"--complement\", \"cut_type_options\": {\"cut_element\": \"-f\", \"__current_case__\": 0, \"delimiter\": \"\", \"colnames_option\": {\"header\": \"N\", \"__current_case__\": 1, \"list\": [\"3\"]}}, \"input\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "9.3+galaxy1", + "tool_version": "9.3+galaxy2", "type": "tool", "uuid": "b6796224-1789-45fd-8392-3237462c9071", "when": null, @@ -85752,14 +85772,14 @@ } ] }, - "53": { + "55": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1", "errors": null, - "id": 53, + "id": 55, "input_connections": { "infile": { - "id": 52, + "id": 54, "output_name": "output" } }, @@ -85785,7 +85805,7 @@ }, "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_find_and_replace/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "fbf99087e067", + "changeset_revision": "86755160afbf", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" @@ -85808,11 +85828,11 @@ "VGP", "Reviewed" ], - "uuid": "3cacf798-0f32-43b9-82c0-2d8f76312c80", - "version": 8 + "uuid": "bd09a130-801c-4cb8-b848-ab90b3161322", + "version": 3 }, "readme": "# Assembly with Hifi reads and Trio Data\n\nGenerate phased assembly based on PacBio Hifi Reads using parental Illumina data for phasing\n\n## Inputs\n\n1. Hifi long reads [fastq]\n2. Concatenated Illumina reads : Paternal [fastq]\n3. Concatenated Illumina reads : Maternal [fastq]\n4. K-mer database [meryldb]\n5. Paternal hapmer database [meryldb]\n6. Maternal hapmer database [meryldb]\n7. Genome profile summary generated by Genomescope [txt]\n8. Genome model parameters generated by Genomescope [tabular]\n9. Homozygous read coverage (Estimated from the Genomescope model if not provided)\n10. Lineage of the species being assembled\n11. Bloom Filter\n12. Name of first haplotype\n13. Name of second haplotype\n\n## Outputs\n\n1. Haplotype 1 assembly\n2. Haplotype 2 assembly\n3. QC: BUSCO report for both assemblies\n4. Merqury report for both assemblies\n5. Assembly statistics for both assemblies\n6. Nx Plot for both assemblies\n7. Size plot for both assemblies\n\n\n", - "changelog": "# Changelog\n\n## [0.2] 2024-08-12\n\n### Added\n\n- Workflow report\n\n### Changed \n\n- Expose the Busco lineage database parameter\n- Fix a bug happening when merging assembly statistics : The presence of the '#' character caused the tables to join incorrectly, and the numbers did not match the metrics\n\n## [0.1.8] 2024-07-22\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n\n## [0.1.7] 2024-07-15\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0`\n\n## [0.1.6] 2024-05-20\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy1`\n\n## [0.1.5] 2024-05-06\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy1`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_easyjoin_tool/9.3+galaxy1`\n\n## [0.1.4] 2024-04-22\n\n### Added\n\n- Add Homozygous Read coverage parameter and calculation\n- Expose Lineage parameter\n\n### Automatic update\n\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy4`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.8+galaxy0`\n\n\n## [0.1.3] 2024-03-25\n\n### Manual update\n\n- Add gff output to Busco\n- Add histogram output to Merqury\n- Label subworkflows\n\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1`\n\n## [0.1.2] 2023-11-14\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3`\n- `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1`\n\n## [0.1.1] 2023-11-20\n\n- Fix author in dockstore\n\n\n## [0.1] - 2023-09-27\n\nCreation of workflow for Trio assembly. \n\n", + "changelog": "# Changelog\n\n## [0.3] 2024-11-11\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/column_maker/Add_a_column1/2.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.24.1+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.20.0+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.6+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/gfastats/gfastats/1.3.9+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.5.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.8.0+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/9.3+galaxy2`\n\n## [0.2] 2024-08-12\n\n### Added\n\n- Workflow report\n\n### Changed \n\n- Expose the Busco lineage database parameter\n- Fix a bug happening when merging assembly statistics : The presence of the '#' character caused the tables to join incorrectly, and the numbers did not match the metrics\n\n## [0.1.8] 2024-07-22\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.9+galaxy1`\n\n## [0.1.7] 2024-07-15\n\n### Automatic update\n- 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[0.1.3] 2024-03-25\n\n### Manual update\n\n- Add gff output to Busco\n- Add histogram output to Merqury\n- Label subworkflows\n\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_grep_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/9.3+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.7+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy1`\n\n## [0.1.2] 2023-11-14\n\n### Automatic update\n- `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.0+galaxy1` was updated to `toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/4.4+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.16.1+galaxy4` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/hifiasm/hifiasm/0.19.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.3.2+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.4.6+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/merqury/merqury/1.3+galaxy3`\n- `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0+galaxy2` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.8+galaxy0`\n- `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.0` was updated to `toolshed.g2.bx.psu.edu/repos/devteam/add_value/addValue/1.0.1`\n- `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/3.4.0+galaxy1`\n\n## [0.1.1] 2023-11-20\n\n- Fix author in dockstore\n\n\n## [0.1] - 2023-09-27\n\nCreation of workflow for Trio assembly. \n\n", "trsID": "#workflow/github.com/iwc-workflows/Assembly-Hifi-Trio-phasing-VGP5/main", "tests": [ { @@ -85899,28 +85919,28 @@ "Assembly statistics for Hap1 and Hap2": { "asserts": { "has_line": { - "line": "# contigs\t85\t23" + "line": "# contigs\t81\t27" } } }, "usable hap1 gfa": { "asserts": { "has_n_lines": { - "n": 175 + "n": 167 } } }, "Hifiasm Trio hap1": { "asserts": { "has_n_lines": { - "n": 170 + "n": 162 } } }, "Busco Summary Hap1": { "asserts": { "has_text": { - "text": "C:1.2%[S:1.2%,D:0.0%],F:0.4%,M:98.4%,n:3354" + "text": "C:1.2%[S:1.1%,D:0.0%],F:0.4%,M:98.4%" } } },