-
Notifications
You must be signed in to change notification settings - Fork 12
/
Copy pathInterval2Maf_pairwise_out.maf
49 lines (37 loc) · 7.82 KB
/
Interval2Maf_pairwise_out.maf
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
##maf version=1
a score=10458
s hg17.chrX 3816458 525 - 154824264 tGATGCACGTTTTCTCTTTTCATACTCATCTT--CAGTTATTCCTTGACACAAACCTGGTTA---CTAGTGCTATTGGCTACATGGCCCCTGTGCCTTAACTTCCCTCATGGCTCCTCCTCCCTGCAGCCTCTGAAGGTTCTCTGTGTAATGAATT--AATTAGCTTTGCTTTTTTCTCCCTTTCCCCC-----CCTCTTTTTCCTGGCCTCT---------AGAAGAAAACACCAGCAGCCCCAGCAAAGAAAACCAGCACTACCTTCAACATCGTGGGGACCACCTATCCCATCAACCTGGCCAAGGACACTGAATTTTCCACCATCTCCAAGGGCGCTGCTCCCAGTGCCTCCTCAACCCCAACAATCATTGCTTCACCCAAGGCCACCTACGTGCAGGACAGCCCGACTGAGACCAAGA---CCTACAACAGTGTCAGCAAGGTTGACAAAATTTCCCGCATCATCTTTCCTGTGCTCTTTGCCATATTCAATCTGGTCTATTGGGCCACATATGTCAACCGGGAGTCAGCTATCAAGGGCATGA
s fr1.chrUn 343715247 529 - 349519338 TGGTCAACATTTTTTTCTTTTCTACTTTTCTTTTCAGGAACCGTTTCAGGCTAACATGGCCAGGATTAAAGATAT-GGTTAGGCTTTTGTTTTGTTCTTGTGTGTGTCGTGTCTCGTGGT----GTTGCTTCTATTTCCTCTTCATGAGTTCAAATGGAAGTATTGTTAAGTTTGTTGCCCCCGACCCTAACGACCTCTGCTTTATGGCCTCTTCTCTTTTCAGAGGAGAGAATCTGAGAATCTGACCAAAAAGACGAACAACACCTTCAACATCGTCGGGACGACCTACGCCATCAACGTGGCGAAGGACCAGGGCTTAACCACCATCTCCAAAAGCGCCACCACCGGCGCGCC----GGCCAAACAGCACTACCTGCACAAAA-----------TGGACGACCCCTACACAGAGGCCAAGAAATCCTACAACCGAGTCAGCATAGTGGACAAAATATCACGCATCATTTTCCCAGTTCTGTTCTTCATCTTCAACTTGGGCTACTGGGCCACATATATCAACAGGAAGCCCATTATTATGAACGCGA
a score=12779
s hg17.chrX 3795168 357 - 154824264 aGGGCCATTTTGAGTGGGGTAAAGCTTCTCCTTTCAAATAGGAAA----TTAGTGATTTCATCG--AATAAGC-------TCTCAATGTCTTCCAGTTGCAACTGGTTCTCATCTTTCCTCT----CCTCAGGTGTCACCACTGTGCTTACCATGACCACCTTGAGTATCAGTGCCAGAAATTCCTTACCTAAAGTGGCATATGCGACGGCCATGGACTGGTTCATAGCCGTCTGTTATGCCTTTGTATTTTCTGCACTGATTGAATTTGCCACTGTCAACTATTTCACCAAGCGGAGTTGGGCTTGGGAAGGCAAGAAGGTGCCAGAGGCCCTGGAGATGAAGGTGAGATA----TAGCAAAAGAGAAACTGAGAAG
s fr1.chrUn 343710815 364 - 349519338 TGAGCCAATTT--------TGAAGTGACAATTTTCAAATGTGCCACATTTTAGTAGCAGCAAAGTCAGAAAGCGACTTTTCCTCTACATCACTTCTCTGATCTGTGTTCTGATGTTTTCCTTTCATCCTCAGGGGTCACCACTGTGCTTACCATGACCACCCTGAGCATCAGTGCTAGAAACTCCCTCCCTAAGGTGGCCTACGCCACCGCCATGGACTGGTTCATGGCGGTGTGCTACGCCTTTGTCTTCTCTGCCTTGATTGAGTTTGCGACGGTCAACTACTTCACCAAACGCAGCTGGGCATGGGATGGGAAAAA------AGAGGGCATGGAAATAAGGGTGAGTGATTTTTAATCAAATATATACTGATACG
a score=10363
s hg17.chrX 3787425 174 - 154824264 TACTCTCTCTTTAGGAGAATATGTCGTCATGACAACCCACTTCCATCTCAAGCGAAAAATTGGCTACTTTGTGATCCAGACCTACTTGCCATGTATCATGACTGTCATTCTGTCACAAGTGTCGTTCTGGCTCAACAGAGAGTCTGTTCCTGCCCGTACAGTCTTTGGTGAGTG
s fr1.chrUn 343708230 174 - 349519338 TCCTCCCGCTGCAGGCGAATATGTTGTGATGACAACATATTTCCATTTGAAAAGGAAAATTGGCTATTTCGTGATTCAAACCTACCTCCCGTGCATCATGACTGTCATTCTGTCTCAAGTCTCCTTCTGGCTGAACCGAGAATCGGTCCCTGCTCGCACCGTGTTCGGTGAGTG
a score=31
s hg17.chrX 3787284 100 - 154824264 ATTTTGTGATTATTAAAGGGCTCTAGTTATATGAACTTGGGAGATGCTGGAATATTGAATATAAG----ATTAAAGAGCTTTGTGAAT--------TGAATT-----GGGGCCCAAC
s fr1.chrUn 62078707 109 - 349519338 AGTTTGTGAGGCCTAAATGCCAAAAGT-------ACTTGA-ACAGGCTTAAGAATGGATCATGAATTTTCTTAAATAAATCTGTTAATCCAGAAAGTAAACTCTGGGGGGGTCCAGA
a score=4963
s hg17.chrX 3776942 285 - 154824264 aCTTCAGTTGAAGACAGACCACATACCCAGAACTCTTTGAAGATGGAAGTTTTATTTCGATCTCATTTGAGTTTAGTATCAAGGGTAATCATTCTCCATTTCCTTCAACTTCTCTTTATTGACCCTTCTCTGCC--TTAGATGCCTATACAACAGCTGAAGTGGTTTATTCTTGGACTCTCGGAAAGAACAAATCCGTGGAAGTGGCACAGGATGGTTCTCGCTTGAACCAGTATGACCTTTTGGGCCATGTTGTTGGGACAGAGATAATCCGGTCTAGTACAGGTA
s fr1.chrUn 343707053 283 - 349519338 AACTTAAATCAACACCAAGTAAAGGCAAAGAATCTTTTAAACTAAGAA----TCTATTAAACTAGATAAACTAAAGCATCGACACTGACGCGTTGATCTGTCATCCACGTTTCCCCTGTTTCCTTTCCTTCTCCATCTAGACGCTTACACCAACAATGAGGTGATTTACCTGTGGACTCAGGGGGACGAGAGGTCTGTGTCTGTCGCAGAGGACGGCTCCAGGCTGAACCAGTATGATTTACTGGGACACGTTATTGGCAAAGAAACCATCAGCTCCAGCACAGGTA
a score=5912
s hg17.chrX 3760375 93 - 154824264 TTAGGTTAACAATTCATGCTGAGTGTCCCATGCATTTGGAAGATTTTCCCATGGATGTGCATGCCTGCCCACTGAAGTTTGGAAGCTGTATGT
s fr1.chrUn 343706399 93 - 349519338 TCAGGTTGACCATCCACGCTGAGTGCCCCATGCACCTGGAGGACTTCCCCATGGACTCGCACGCCTGTCCTCTCAAGTTTGGAAGTTGTAAGT
a score=4332
s hg17.chrX 3733405 476 - 154824264 ATCAAGGAGAATTTGGGGAAACAGAGCATTAGGGAAGGAATAGATGGAAGAGAGGCATGCTTGTAATAAATTATAGGAAAGAGAAGAGTTTGAAAAAGAGATAAGAGTTCACACAATTGTGGAAAGAATGGAGTGGAGTATATGTAAACAGAAAAGAAGCTGTATGGAATGAGGTGGATGGAGGGACAGAATAATGAGGAGGAGAT---GTGGATGGGCAGAAGACAGTAAGCAAATGGAAGAGAAGCAAGA-----GGAAGGAGAGAGTAATGGGCAGGAAAGGATCTGAACCCAGTAGAGATTGCAAATAGTGAGGAGAAATAGAGAATGAATGAAAAGAACAGG--ATAGAGGAGAAACAACAATAAAAGGAATAAAGCATAGAGAATAGGTTTAAGTTTTGGAGGAGGGATAGAGAA-----GAGAGAAGAAAGGAGAGAGGATGGGAATATTGAAATACAAAAAAATAGAAGGTGCAGGTTGAGGA
s fr1.chrUn 303515824 444 + 349519338 AACACGGAATATGGAGGGAAAACGGGGAATATGGAGGGAACAG--GGAATATGG-------------------TGGGAACACAGAGGGAATATGGAGGGAACACGGG-------GAATATGGAGGGAA---AACGGGGAATATGGAGGGAACGGGGAATATGGAGGGAACGAGGAATATGGAGGGAACGGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACAGGGAAT--ATGGAGGGAACGGGGAATATGGAGGGAACACAGGGAATATGGAGGGAACACAGGGAATAT--------------GGAGGGAACGAGGAATATGGAGGGAACACAGGGAATATGGAGGGAACGAGGAATATGGAGGGAACACGGGGTACTCAGTGAGAA
a score=719
s hg17.chrX 3731355 108 - 154824264 TATGTAAGTAGAATGCAGTCAAGAAACTTGTAGGTGGATAGGTAGAGGCAGAAGGAAGAGAGGAAGGACGTTCTAGACAGAGAAAACCAAGTGAGCAGTTGCAGGGAA
s fr1.chrUn 303515724 91 + 349519338 TATGGAGGGAACACG------GGGAATATGGAGG-GAATATAGAGGGGAGACGGGGAATATGGAGGGA------ACACGGGGAATATGGAGGGAACA----CAGGGAA
a score=3647
s hg17.chrX 3730591 447 - 154824264 CAAGGAAAAAAGGATAATACTTCAGAGAGAAGTTGGATGAGAGATGGGAGGAA--AAATGAACATAGAGGAGAAATGAGCATAGAGTGGAGGATAAAATAATGAAGAAGGAAAGTGGATAGAAGTGGGAAGATGAGGGTCAAGAGGGGAGGAGAAGACTAATTACACAGAGTACATAGAGGCATGTATATTGGAGAAATGAGAATGGTGAAAAGAAAGAGAGTATGAGAAGAGAGGACAAAAAGAGTAGAGAAGTTGAGAAGACAAAGGATAAGATGGTGTAAAATAAAGAAGCTAGATTAGATATTAGGATATTCTAAAGAGATAGGCGAATATAATGAAGTGGATGTAGTAGATGGGAATAAAGAGGAAAAGACATAGAGAAGTAGGGGAAGGGACATGGGAGGAGATGAACAAGAGGGAGGGAAATTGTAGACGAAAGAAAGAGAA
s fr1.chrUn 303515378 346 + 349519338 CACGGGGAATATGGCGGGAACACAGAGGGAATATGGAGGGAACACGGGGAATATGGAGGGAATATAGAGGGGAGACGGG--GAATATGGAGGG-AACATGGGGAATATGGAGGGAATATAGA---GGGGAGACGGGGAATATGGAGGGA--------------ACACGGGGAATATGGAGG---GAACACAGG------GAATATGGCGGGAACACAGGGAATATG----GAGGGAACACGGGGAATATGGAGG----GAACACAGGGAATATGGAGG----AAATATAGAGGGAAAACGGGAAAT------------------------------ATGGAGGGAATATGGT----GGGAACACAGGGAATA----------------TGGAGGGAACACGGGG----------AATATGGAGGGAA--TATAGAGGGGAGACGGGGAA
a score=13113
s hg17.chrX 3729219 238 - 154824264 CCCCTAGGAGTACACTATTGATGTATTTTTTCGGCAGACATGGCATGATGAAAGACTGAAATTTGATGGCCCCATGAAGATCCTTCCACTGAACAATCTCCTGGCTAGTAAGATCTGGACACCGGACACCTTCTTCCACAATGGCAAGAAATCAGTGGCTCATAACATGACCACGCCCAACAAGCTGCTCAGATTGGTGGACAACGGAACCCTCCTCTATACAATGAGGTCAGAGAGT
s fr1.chrUn 343703525 238 - 349519338 CCCTCAGGAGTACACCATCGACGTCTTCTTCCGTCAGAGTTGGAGAGACGAGAGGCTAAAGTTTGATGGACCTATGCAGGTTTTACCCCTGAACAACCTCCTGGCCAGTAAGATTTGGACTCCTGACACCTTTTTCCACAACGGAAAGAAGTCTGTTGCCCACAACATGACGACTCCGAACAAACTGCTGCGCCTGGTCGACAACGGCACGCTTCTATATACAATGAGGTGAGGCGGT
a score=3528
s hg17.chrX 3700391 307 - 154824264 AGTAAGTTGGCTGTCATTCAGAGT-ACTGCACTG-GACTCT---CTCTGAGCTAAGACAAAAGCCTTTCCTGACATTCTGCTTTTCTACTTTCTTTCACGCAGATGCAGTGACTGAAGTGAAGACTGACATCTACGTGACCAGTTTTGGCCCTGTGTCAGACACTGACATGGTA---------AGTTCTTGCAAAGGTAAATGTA---AAAGAGGATGCACT----AGACCAAAGAAAATAAATTGGAGCTTTCCTAAGGC---AGGGCCTTGTAGCTATATTCTAAGGAGTGGTCTTTTCTCA--TATGAATTT--CCTACCCTCGCCACCCTA
s fr1.chrUn 241017738 330 - 349519338 ATTCATTTGTATGTCCTTTTGTGTTACTAAGCTGTGTCTCTAATTCCAGAGCGAAAACAAAACTCATTAGATTTGTGTCATTTGTTCATTTGCTC---CATAGGTCCTGTAACTGAGGTCAAGACAGATATTTATGTGACAAGTTTTGGGCCTGTGTCAGATGTTGAAATGGTACGTACACCGAGTGTTATTGATGCTAAATTTACCTCAGGAGGGGACACTTTTAATACCTTATAGAACATTATAGAGATTCTGGGACGTGCAAGGGCAGTGCAGGAAAGGCC--AGGTGGGGTCAGGTCTTAGTTATGAAGCGGACATACTGTCGCAGCCCTA
a score=5471
s hg17.chrX 3639441 205 - 154824264 TCTTGAATTACGATATCTA-GTCATGT---ATTTTTTTTCCTATTAAGAACTATTATTTTTTTTCTTTTC---CTTGCATTGCCTCAGGCTGTCTC---CTAAGCATGCCCCAGATATTCCTGATGACAGCACTGACAACATCACTATCTTCACCAGAATCTTGGATCGTCTTCTGGACGGCTATGACAACCGGCTGCGACCTGGGCTTGGAGGT
s fr1.chrUn 333536350 213 + 349519338 TCATTAATCACAAAGACCACGTCATGTTTGACGTCTTGTGGTTTTAAGAAGCGCAAGCCTTGTTCTTTTCACTCTCCCCTTCCTCTCGTCTCTTCCAGGCTCTGCTTGTCCCAGTCTGAGCCGCCTAC--CAACGACAACAGCACAGTTTTCACCAGGATCCTGGATGGGCTCCTTGACGGTTACGACAACAGGCTGCGACCTGGGCTTGGGGGT