diff --git a/content/publication-library/contribute/index.md b/content/publication-library/contribute/index.md index d1cfaaef0d..dc49a209f3 100644 --- a/content/publication-library/contribute/index.md +++ b/content/publication-library/contribute/index.md @@ -3,13 +3,15 @@ title: "Contribute to the Galaxy Publication Library" ---
-[Galaxy Publication Library at Zotero](https://www.zotero.org/groups/galaxy) + +[![Galaxy Publication Library at Zotero](/images/logos/zotero-logo-small-trans.png)](https://www.zotero.org/groups/1732893/galaxy) +
It takes a fair amount of work to keep track of publications that reference Galaxy in some way: There are now over 1000 papers per year that do so. The bulk of this curation is currently done by [Galaxy -Team](/galaxy-team/) members using (quite possibly hundreds) of +Team](/galaxy-team/) members using (quite possibly hundreds of) email alerts and custom software. If you want to help curate papers then here's how you can help. @@ -23,7 +25,7 @@ high-throughput supernova of a curator.*) We use the [Zotero](https://zotero.org/) social bookmarking service to organize publications that are about, use, or reference Galaxy. The [Galaxy Group on Zotero](https://www.zotero.org/groups/galaxy) is open to any community member -who [would like to contribute](/publication-library/contribute/). +who would like to contribute. # Set Up @@ -47,7 +49,7 @@ for this work as we don't store PDFs in the Galaxy Group. To add publications you'll need to [download and install](https://www.zotero.org/download/) the Zotero Client. The client is -available for Mac, Linux, and Windows. +available for Mac, Linux, Windows, and iOS. ## Install the Zotero Connector in your web browser @@ -59,9 +61,8 @@ automatically imports a wealth of metadata from most publishers. default option.) The [Zotero Connector](https://www.zotero.org/download/) is available for for -Chrome, Firefox, Safari, and Opera. A -[bookmarklet](https://www.zotero.org/downloadbookmarklet) is also available for -other browsers, tablets, and phones. +Chrome, Firefox, Safari, and Edge. +Options for users of other browsers are explained on the download page. ## Read this page carefully diff --git a/content/publication-library/index.md b/content/publication-library/index.md index ac1d991556..c7f01fde7a 100644 --- a/content/publication-library/index.md +++ b/content/publication-library/index.md @@ -4,11 +4,11 @@ title: "Galaxy Publication Library"
-[![Galaxy Publication Library at Zotero](/images/logos/zotero-logo-small-trans.png)](https://www.zotero.org/groups/galaxy) +[![Galaxy Publication Library at Zotero](/images/logos/zotero-logo-small-trans.png)](https://www.zotero.org/groups/1732893/galaxy)
-The Galaxy Project uses the [Zotero](https://zotero.org/) social bookmarking service to organize publications that reference Galaxy. The [Galaxy Group](https://www.zotero.org/groups/galaxy) lists published articles, conference proceedings, theses, book chapters and books that use, extend, reference or implement Galaxy. You can [search the library at Zotero](https://www.zotero.org/groups/1732893/galaxy/items), or through the [unified Galaxy search](/search/). +The Galaxy Project uses the [Zotero](https://zotero.org/) social bookmarking service to organize publications that reference Galaxy. The [Galaxy Group](https://www.zotero.org/groups/1732893/galaxy) lists published articles, conference proceedings, theses, book chapters and books that use, extend, reference or implement Galaxy. You can [search the library at Zotero](https://www.zotero.org/groups/1732893/galaxy/items), or through the [unified Galaxy search](/search/). *(Need to cite Galaxy in a publication? See [Citing Galaxy](/citing-galaxy/).)* @@ -24,26 +24,26 @@ Galaxy specific tags all start with "+": | Tag | Explanation | | --- | --- | -| **[+Galactic](https://www.zotero.org/groups/galaxy/items/tag/+Galactic/)** | Publication is about Galaxy. | -| **[+Stellar](https://www.zotero.org/groups/galaxy/items/tag/+Stellar/)** | Publication features Galaxy prominently. | -| [+Cloud](https://www.zotero.org/groups/galaxy/items/tag/+Cloud/) | Publications referencing / extending / discussing Galaxy in a cloud context. | -| [+Education](https://www.zotero.org/groups/galaxy/items/tag/+Education/) | Publications using / referencing / discussing Galaxy in an education/training context. | -| [+HowTo](https://www.zotero.org/groups/galaxy/items/tag/+HowTo) | Papers about how to use Galaxy for specific analyses. These are tutorials. | -| [+IsGalaxy](https://www.zotero.org/groups/galaxy/items/tag/+IsGalaxy/) | Publications about Galaxy itself or installations of Galaxy. | -| [+Methods](https://www.zotero.org/groups/galaxy/items/tag/+Methods/) | Uses Galaxy in their methods. If it's clear from the paper, which instance was used, then methods papers will also include one or more of these tags: | -|   [+UseCloud](https://www.zotero.org/groups/galaxy/items/tag/+UseCloud/) |   Uses a custom built cloud based instance of Galaxy in its methods. | -|   [+UseLocal](https://www.zotero.org/groups/galaxy/items/tag/+UseLocal/) |   Uses a local installation of Galaxy in its methods. | -|   [+UseMain](https://www.zotero.org/groups/galaxy/items/tag/+UseMain/) |   Uses the project's public server, [usegalaxy.org](https://usegalaxy.org/) (a.k.a. [Main](/main/), in its methods. | -|   [+UsePublic](https://www.zotero.org/groups/galaxy/items/tag/+UsePublic/) |   Uses a [publicly accessible Galaxy platform](/use/) in its methods. | -| [+Other](https://www.zotero.org/groups/galaxy/items/tag/+Other/) | Publications that don't fit well under any other tag. | -| [+Project](https://www.zotero.org/groups/galaxy/items/tag/+Project/) | Publications with a [Galaxy team](/galaxy-team/) member as an author. | -| [+RefPublic](https://www.zotero.org/groups/galaxy/items/tag/+RefPublic/) | References a [publicly accessible Galaxy instance](/use/) or a [Galaxy service](/use/). This is distinct from the *+UsePublic* tag. | -| [+Reproducibility](https://www.zotero.org/groups/galaxy/items/tag/+Reproducibility/) | Reproducibility and persistence in science. | -| [+Shared](https://www.zotero.org/groups/galaxy/items/tag/+Shared/) | Publications that have published workflows, histories, datasets, pages, or visualizations in a Galaxy instance. | -| [+Tools](https://www.zotero.org/groups/galaxy/items/tag/+Tools/) | Tools that run in, have been ported to, or interact with Galaxy | -| [+Unknown](https://www.zotero.org/groups/galaxy/items/tag/+Unknown/) | Publications that we know refer to Galaxy, but we aren't sure how because they are behind a paywall we don't have access to. These are revisited periodically. | -| [+Visualization](https://www.zotero.org/groups/galaxy/items/tag/+Visualization/) | Publications referencing Galaxy in a visualization and/or visual analytics context. | -| [+Workbench](https://www.zotero.org/groups/galaxy/items/tag/+Workbench/) | Publication mentions Galaxy as a platform. | +| **[+Galactic](https://www.zotero.org/groups/1732893/galaxy/tags/+Galactic/)** | Publication is about Galaxy. | +| **[+Stellar](https://www.zotero.org/groups/1732893/galaxy/tags/+Stellar/)** | Publication features Galaxy prominently. | +| [+Cloud](https://www.zotero.org/groups/1732893/galaxy/tags/+Cloud/) | Publications referencing / extending / discussing Galaxy in a cloud context. | +| [+Education](https://www.zotero.org/groups/1732893/galaxy/tags/+Education/) | Publications using / referencing / discussing Galaxy in an education/training context. | +| [+HowTo](https://www.zotero.org/groups/1732893/galaxy/tags/+HowTo) | Papers about how to use Galaxy for specific analyses. These are tutorials. | +| [+IsGalaxy](https://www.zotero.org/groups/1732893/galaxy/tags/+IsGalaxy/) | Publications about Galaxy itself or installations of Galaxy. | +| [+Methods](https://www.zotero.org/groups/1732893/galaxy/tags/+Methods/) | Uses Galaxy in their methods. If it's clear from the paper, which instance was used, then methods papers will also include one or more of these tags: | +|   [+UseCloud](https://www.zotero.org/groups/1732893/galaxy/tags/+UseCloud/) |   Uses a custom built cloud based instance of Galaxy in its methods. | +|   [+UseLocal](https://www.zotero.org/groups/1732893/galaxy/tags/+UseLocal/) |   Uses a local installation of Galaxy in its methods. | +|   [+UseMain](https://www.zotero.org/groups/1732893/galaxy/tags/+UseMain/) |   Uses the project's public server, [usegalaxy.org](https://usegalaxy.org/) (a.k.a. [Main](/main/)), in its methods. | +|   [+UsePublic](https://www.zotero.org/groups/1732893/galaxy/tags/+UsePublic/) |   Uses a [publicly accessible Galaxy platform](/use/) in its methods. | +| [+Other](https://www.zotero.org/groups/1732893/galaxy/tags/+Other/) | Publications that don't fit well under any other tag. | +| [+Project](https://www.zotero.org/groups/1732893/galaxy/tags/+Project/) | Publications with a [Galaxy team](/galaxy-team/) member as an author. | +| [+RefPublic](https://www.zotero.org/groups/1732893/galaxy/tags/+RefPublic/) | References a [publicly accessible Galaxy instance](/use/) or a [Galaxy service](/use/). This is distinct from the *+UsePublic* tag. | +| [+Reproducibility](https://www.zotero.org/groups/1732893/galaxy/tags/+Reproducibility/) | Reproducibility and persistence in science. | +| [+Shared](https://www.zotero.org/groups/1732893/galaxy/tags/+Shared/) | Publications that have published workflows, histories, datasets, pages, or visualizations in a Galaxy instance. | +| [+Tools](https://www.zotero.org/groups/1732893/galaxy/tags/+Tools/) | Tools that run in, have been ported to, or interact with Galaxy | +| [+Unknown](https://www.zotero.org/groups/1732893/galaxy/tags/+Unknown/) | Publications that we know refer to Galaxy, but we aren't sure how because they are behind a paywall we don't have access to. These are revisited periodically. | +| [+Visualization](https://www.zotero.org/groups/1732893/galaxy/tags/+Visualization/) | Publications referencing Galaxy in a visualization and/or visual analytics context. | +| [+Workbench](https://www.zotero.org/groups/1732893/galaxy/tags/+Workbench/) | Publication mentions Galaxy as a platform. | ### Public Platform tags (">")