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content/{blog => news}/2023-08-21-Paper-Highlight/2023-08-21-paper-highlight.jpg (100%) rename content/{blog => news}/2023-08-21-Paper-Highlight/index.md (100%) rename content/{blog => news}/Galaxy_Climate_Project_Introduction_Blog_1/Galaxy_Climate_Project_Outreachy_Blog1.png (100%) rename content/{blog => news}/Galaxy_Climate_Project_Introduction_Blog_1/index.md (100%) rename content/{blog/main.md => news/blogmain.md} (100%) delete mode 100644 src/pages/Blog.vue diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index 0402047cc5..57fbb38319 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -44,9 +44,6 @@ Anyone can update and add content to the site using "standard" GitHub and Git pr - [Event metadata](#event-metadata) - [Add an Event](#add-an-event) - [Event example metadata](#event-example-metadata) - - [Blog metadata](#blog-metadata) - - [Add a blog post](#add-a-blog-post) - - [Blog post example metadata](#blog-post-example-metadata) - [Use Galaxy Resource Directory metadata](#use-galaxy-resource-directory-metadata) - [Add a resource](#add-a-resource) - [Resource entry example metadata](#resource-entry-example-metadata) @@ -570,120 +567,6 @@ subsites: ``` -### Blog metadata - -The Galactic Blog includes anything that is related to Galaxy and is longer than a news item. - -Blog root: - -- GitHub source: [/content/blog/index.md](/content/blog/index.md) -- Rendered on web site: [galaxyproject.org/blog/](https://galaxyproject.org/blog/) - -There are two types of blog entries: - -* *External:* These blog entries were created outside the Hub, on some other platform. Typically, hub pages for external blog posts contain only enough information to populate the [blog index page](https://galaxyproject.org/blog/) and link to the blog post. Everything is in the metadata. -* *Native:* The content of these blog posts exists in the Hub. That is, the blog posts were first created in the Galaxy Community Hub. These posts have metadata, but also content below the metadata. The index points to the post's hub page. - -#### Add a blog post - -To add a blog post, you'll need to create a directory for the post under `/content/blog/` and then create an `index.md` file in the new directory. - -:chicken: New directories (and thus blog post URLs) are named with this convention: - -`YYYY-MM-topic-in-one-or-more-words` - -Blog posts have this metadata: - -#### `title` - -- Required -- Meaning - - Title of the blog post. -- Use - - Becomes the blog page title. - - Shown in the blog post list as the name of the entry. -- Format - - Free text all on one line, and should be wrapped in quotes. - -#### `tease` - -- Optional -- Meaning - - Short bit of additional text about the blog post. - - Meant to complement `title`. -- Use - - display with the event title, when space allows. -- Format - - Free text all on one line, and should be wrapped in quotes. - -#### `date` - -- Required -- Meaning - - Date the blog post was posted. -- Use - - Determines where in blog index the item shows up. -- Format - - `'YYYY-MM-DD'` - Needs to be wrapped in quotes. - -#### `authors` - -- Required -- Meaning - - Who wrote the blog post. -- Use - - Displayed in blog index and on blog post. -- Format - - Free text all on one line, and should be wrapped in quotes. - -#### `external_url` - -- Optional - - If present, the `title` text in the index will link to the `external_url`. -- Meaning - - If a post has an `external_url` it means the post was created outside the Hub. -- Use - - If present then title in the index links to this location. -- Format - - URL - - Should be an external URL. - -#### `source_blog` - -- Optional - - Only present if the post is external. -- Meaning - - The name of the blog / place where it was posted. -- Use - - Displayed in blog index and in blog entry. -- Format - - Free text all on one line, and should be wrapped in quotes. - -#### `source_blog_url` - -- Optional - - Only present if the post is external. -- Meaning - - The URL of the blog / place where it was posted. -- Use - - Whenever `source_blog` is shown, it links to here. -- Format - - An external URL. - -#### Blog post example metadata - -``` ---- -date: '2017-07-25' -title: "Elixir, CLIMB, Sanger and the Galaxy Community Conference" -tease: "UK, UK, UK, and France" -authors: "Simon Gladman" -external_url: "https://www.melbournebioinformatics.org.au/projects-blog/uk-tour-2017-blog2/" -source_blog_url: "https://www.melbournebioinformatics.org.au/projects-blog/" -source_blog: "Melbourne Bioinformatics Projects Blog" ---- -``` - ### Use Galaxy Resource Directory metadata Use Galaxy Resource Directory: diff --git a/config.json b/config.json index 213a1f69e4..bf60ea4189 100644 --- a/config.json +++ b/config.json @@ -6,7 +6,6 @@ "Platform": { "path": "/use/", "type": "md" } }, "categories": { - "/blog": "blog", "/events": "events", "/news": "news", "/careers": "careers", @@ -105,7 +104,7 @@ "/admin/internals/galaxy-ops/Help Info.html": "/admin/internals/galaxy-ops/help-info/", "/admin/internals/galaxy-ops/Python.html": "/admin/internals/galaxy-ops/python/", "/admin/internals/galaxy-ops/C.html": "/admin/internals/galaxy-ops/c/", - "/blog/2017-10-16-UnicyclerTutorial/": "/blog/2017-10-16-unicycler-tutorial/", + "/blog/2017-10-16-UnicyclerTutorial/": "/news/2017-10-16-unicycler-tutorial/", "/cloudman/CustomizeGalaxyCloud.html": "/cloudman/customize-galaxy-cloud/", "/tutorials/nt_rnaseq/": "/tutorials/nt-rnaseq/", "/tutorials/pt_gfam/": "/tutorials/pt-gfam/", diff --git a/content/belgium/navbar.yml b/content/belgium/navbar.yml index d32a38a1a4..f30f05e558 100644 --- a/content/belgium/navbar.yml +++ b/content/belgium/navbar.yml @@ -15,8 +15,8 @@ right: contents: - label: The Galaxy Community target: "/community/" - - label: Blog - target: "/blog/" + - label: News + target: "/news/" - label: Working Groups target: "/community/wg/" - label: Governance diff --git a/content/cards.md b/content/cards.md index afc32b5b72..055f552c78 100644 --- a/content/cards.md +++ b/content/cards.md @@ -13,11 +13,6 @@ list: icon: far fa-calendar-alt - name: videos type: static -- name: blog - type: dynamic - title: Blog - link: /blog/ - icon: fas fa-pencil-alt - name: careers type: dynamic title: Careers diff --git a/content/community/devroundtable/main.md b/content/community/devroundtable/main.md index c13edb6e2b..e6ac92ac21 100644 --- a/content/community/devroundtable/main.md +++ b/content/community/devroundtable/main.md @@ -5,7 +5,7 @@ noun: Meeting # **Goodbye Developer Roundtables** -Working Groups have changed the way Galaxy operates, for the better. One of those changes is that the need for roundtable talks has largely disappeared, as working group meetings are covering the topics that used to be reserved for round tables. Because of that, we are saying goodbye to developer roundtable talks. For more information on how working groups serve this need, please see [this blog post](/blog/2022-01-27-disbanding-roundtables/). +Working Groups have changed the way Galaxy operates, for the better. One of those changes is that the need for roundtable talks has largely disappeared, as working group meetings are covering the topics that used to be reserved for round tables. Because of that, we are saying goodbye to developer roundtable talks. For more information on how working groups serve this need, please see [this blog post](/news/2022-01-27-disbanding-roundtables/).
diff --git a/content/community/galaxy-admins/meetups/2013-11-20/index.md b/content/community/galaxy-admins/meetups/2013-11-20/index.md index ff71c4970a..83168e7394 100644 --- a/content/community/galaxy-admins/meetups/2013-11-20/index.md +++ b/content/community/galaxy-admins/meetups/2013-11-20/index.md @@ -48,7 +48,7 @@ Action items from BoF: Draft implementations of the first two are in place: * Community/Deployments hub page -* Community/Logs hub page (since moved to the [Galaxy Blog](/blog/) +* Community/Logs hub page (since moved to the [Galaxy Blog](/news/) What do people think of this approach? The use of *boxes* on the right side is used to create much more informative lists of deployments and logs on their hub pages, using the [http://moinmo.in/MacroMarket/DictColumns](http://moinmo.in/MacroMarket/DictColumns) macro. diff --git a/content/community/galaxy-admins/meetups/2019-03-21/index.md b/content/community/galaxy-admins/meetups/2019-03-21/index.md index 003a2085c2..96e7b53d3a 100644 --- a/content/community/galaxy-admins/meetups/2019-03-21/index.md +++ b/content/community/galaxy-admins/meetups/2019-03-21/index.md @@ -7,12 +7,12 @@ date: '2019-03-21'
[GalaxyAdmins](/community/galaxy-admins/)

[Kubernetes](https://kubernetes.io/)

-[Pablo Moreno](/blog/2018-08-cotm-pablo-moreno/) +[Pablo Moreno](/news/2018-08-cotm-pablo-moreno/)
* **Date:** 21 March 2019, 15:00 GMT (see your [local time](https://www.timeanddate.com/worldclock/fixedtime.html?msg=March+2019+GalaxyAdmins+Meetup&iso=20190321T15&p1=1234&ah=1)) * **Topic:** Discussion and *Running Galaxy on Kubernetes* -* **Presenter:** [Pablo Moreno](/blog/2018-08-cotm-pablo-moreno/) +* **Presenter:** [Pablo Moreno](/news/2018-08-cotm-pablo-moreno/) * **Links:** [Video](https://psu.zoom.us/recording/share/fxYPYnl0qXKh_mxy4nPb-k2JunrdJWC0P9QfTS66uT2wIumekTziMw), [Slides](https://depot.galaxyproject.org/hub/attachments/community/galaxy-admins/meetups/2019-03-21/galaxy-admins-kubernetes-2019-03-21.pdf) *[GalaxyAdmins](/community/galaxy-admins/)* meetups are back! We are a discussion group for Galaxy community members who are responsible for Galaxy installations. We are going to try some changes to the format this year to hopefully make the admin meetups more interactive and engaging for all participants. diff --git a/content/elixir-it/navbar.yml b/content/elixir-it/navbar.yml index fe9c8367ce..f529b716b2 100644 --- a/content/elixir-it/navbar.yml +++ b/content/elixir-it/navbar.yml @@ -24,8 +24,8 @@ right: contents: - label: The Galaxy Community target: "/community/" - - label: Blog - target: "/blog/" + - label: News + target: "/news/" - label: Working Groups target: "/community/wg/" - label: Governance diff --git a/content/elixir-it/news/main.md b/content/elixir-it/news/main.md index 2e9659adfd..e3d829ee7c 100644 --- a/content/elixir-it/news/main.md +++ b/content/elixir-it/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/erasmusmc/navbar.yml b/content/erasmusmc/navbar.yml index 2437b5bbcf..fc335b5e0c 100644 --- a/content/erasmusmc/navbar.yml +++ b/content/erasmusmc/navbar.yml @@ -24,8 +24,8 @@ right: contents: - label: The Galaxy Community target: "/community/" - - label: Blog - target: "/blog/" + - label: News + target: "/news/" - label: Working Groups target: "/community/wg/" - label: Governance diff --git a/content/erasmusmc/news/main.md b/content/erasmusmc/news/main.md index a43ae18000..fa1396b5a8 100644 --- a/content/erasmusmc/news/main.md +++ b/content/erasmusmc/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/eu/navbar.yml b/content/eu/navbar.yml index eae6dd59d7..38fe0e15ce 100644 --- a/content/eu/navbar.yml +++ b/content/eu/navbar.yml @@ -26,8 +26,8 @@ right: contents: - label: The Galaxy Community target: "/community/" - - label: Blog - target: "/blog/" + - label: News + target: "/news/" - label: Working Groups target: "/community/wg/" - label: Governance diff --git a/content/eu/news/main.md b/content/eu/news/main.md index 050436d15f..58f9b0fd68 100644 --- a/content/eu/news/main.md +++ b/content/eu/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/events/gcc2014/bofs/galaxy-admins/index.md b/content/events/gcc2014/bofs/galaxy-admins/index.md index 71a876f48c..c4336ace7f 100644 --- a/content/events/gcc2014/bofs/galaxy-admins/index.md +++ b/content/events/gcc2014/bofs/galaxy-admins/index.md @@ -106,7 +106,7 @@ We investigated splitting the Galaxy-Dev [Mailing List](/mailing-lists/) into tw Two items were implemented late in 2013: -* Galaxy Log Board: (since moved to the [Galaxy Blog](/blog/) a place for linking to and/or describing experiences administering Galaxy. These entries are dated, may not be particularly maintained once created. And, more often then not, Log Board entries are just metadata, plus a link to an external resource on the web, such as a Wordpress page. +* Galaxy Log Board: (since moved to the [Galaxy Blog](/news/) a place for linking to and/or describing experiences administering Galaxy. These entries are dated, may not be particularly maintained once created. And, more often then not, Log Board entries are just metadata, plus a link to an external resource on the web, such as a Wordpress page. * Galaxy Deployment Catalog (since dropped): Describes how different Galaxy Servers are implemented. This is a means for admins to learn what others have done to address particular types of demand and communities. # The GalaxyAdmins Group Itself diff --git a/content/freiburg/news/main.md b/content/freiburg/news/main.md index 4c18492be1..2ba110f949 100644 --- a/content/freiburg/news/main.md +++ b/content/freiburg/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/galaxy-updates/2014-01/index.md b/content/galaxy-updates/2014-01/index.md index e9639a32b0..51d6926168 100644 --- a/content/galaxy-updates/2014-01/index.md +++ b/content/galaxy-updates/2014-01/index.md @@ -13,7 +13,7 @@ December saw the launch of two *[Galaxy community hubs](/community/)* - one to d
Galaxy Community Log Board
-The *[Galaxy Community Log Board](/blog/)* is a place to share how you addressed a particular task in your Galaxy deployment. Log entries describe specific solutions to particular tasks, such as the [details of what steps were taken to deploy Galaxy on particular platforms](/blog/2013-04-urgi-virtualisation/), or specific stumbling blocks when configuring Galaxy. Log entries are an easy way to help others (and learn from others) by sharing what you've already done. If you have figured out or documented how to do something, then this is the ideal forum for sharing that information with the community. +The *[Galaxy Community Log Board](/news/)* is a place to share how you addressed a particular task in your Galaxy deployment. Log entries describe specific solutions to particular tasks, such as the [details of what steps were taken to deploy Galaxy on particular platforms](/news/2013-04-urgi-virtualisation/), or specific stumbling blocks when configuring Galaxy. Log entries are an easy way to help others (and learn from others) by sharing what you've already done. If you have figured out or documented how to do something, then this is the ideal forum for sharing that information with the community.
@@ -27,7 +27,7 @@ The *[Galaxy Community Log Board](/blog/)* is a place to share how you addressed -The [Galaxy Community Log Board](/blog/) describes how things can be done, and it complements the (also [recently announced](/news/galaxy-deployment-catalog/)) *Galaxy Deployments Catalog*, which describes different Galaxy installations. Both the [Log Board](/blog/) and the Deployments Catalog came out of discussions at the [GCC2013 GalaxyAdmins Birds-of-a-Feather gathering](/events/gcc2013/bof/galaxy-admins/). Thanks to everyone who attended that BoF and to everyone who taken the time to [log their experiences so far](/blog/). +The [Galaxy Community Log Board](/news/) describes how things can be done, and it complements the (also [recently announced](/news/galaxy-deployment-catalog/)) *Galaxy Deployments Catalog*, which describes different Galaxy installations. Both the [Log Board](/news/) and the Deployments Catalog came out of discussions at the [GCC2013 GalaxyAdmins Birds-of-a-Feather gathering](/events/gcc2013/bof/galaxy-admins/). Thanks to everyone who attended that BoF and to everyone who taken the time to [log their experiences so far](/news/). ## Galaxy Deployment Catalog diff --git a/content/galaxy-updates/2014-02/index.md b/content/galaxy-updates/2014-02/index.md index b6947b5259..73e5383f63 100644 --- a/content/galaxy-updates/2014-02/index.md +++ b/content/galaxy-updates/2014-02/index.md @@ -343,7 +343,7 @@ An update to Galaxy CloudMan was released in January. CloudMan offers an easy wa # Galaxy Community Hubs -The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched in December. January saw several additions: +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched in December. January saw several additions: **New Galaxy Deployment Catalog entries:** @@ -353,9 +353,9 @@ The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community bringing the number of deployment descriptions to 10. -**New [Community Log Board](/blog/) entries** +**New [Community Log Board](/news/) entries** -* [LDAP remoteUser Logout](/blog/2014-01-ldap-remote-user-logout/) +* [LDAP remoteUser Logout](/news/2014-01-ldap-remote-user-logout/) bringing the number of log entries to 12. diff --git a/content/galaxy-updates/2014-03/index.md b/content/galaxy-updates/2014-03/index.md index 78ee3018f1..cee67c76fa 100644 --- a/content/galaxy-updates/2014-03/index.md +++ b/content/galaxy-updates/2014-03/index.md @@ -372,7 +372,7 @@ upgrade: $ hg pull

-The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched in December. If you have a deployment, or experience you want to share then please publish them. +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched in December. If you have a deployment, or experience you want to share then please publish them. # ToolShed Contributions diff --git a/content/galaxy-updates/2014-04/index.md b/content/galaxy-updates/2014-04/index.md index def5a4d7b3..88ea6c206a 100644 --- a/content/galaxy-updates/2014-04/index.md +++ b/content/galaxy-updates/2014-04/index.md @@ -345,9 +345,9 @@ The most recent version of CloudMan was [released in January 2014](/news/cloudma

-The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched in December. If you have a deployment, or experience you want to share then please publish them. +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched in December. If you have a deployment, or experience you want to share then please publish them. -There was one new [Community Log Board](/blog/) entry in March: +There was one new [Community Log Board](/news/) entry in March: * [Basic Galaxy Puppet Module](https://forge.puppetlabs.com/urgi/galaxy) (work by Olivier Inizan, Mikael Loaec of INRA-URGI) diff --git a/content/galaxy-updates/2014-05/index.md b/content/galaxy-updates/2014-05/index.md index 6d21b56894..7cf1c2a8c0 100644 --- a/content/galaxy-updates/2014-05/index.md +++ b/content/galaxy-updates/2014-05/index.md @@ -474,7 +474,7 @@ The most recent version of CloudMan was [released in January 2014](/news/cloudma

-The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched in December. If you have a deployment, or experience you want to share then please publish them. +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched in December. If you have a deployment, or experience you want to share then please publish them.

Galaxy ToolShed
diff --git a/content/galaxy-updates/2014-06/index.md b/content/galaxy-updates/2014-06/index.md index e0ccb1f54d..9368ebb4db 100644 --- a/content/galaxy-updates/2014-06/index.md +++ b/content/galaxy-updates/2014-06/index.md @@ -324,7 +324,7 @@ One new deployment description was added in May: * deepTools -The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/blog/) you want to share then please publish them. +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/news/) you want to share then please publish them.

Galaxy ToolShed
diff --git a/content/galaxy-updates/2014-07/index.md b/content/galaxy-updates/2014-07/index.md index a74116d075..0cc0f450aa 100644 --- a/content/galaxy-updates/2014-07/index.md +++ b/content/galaxy-updates/2014-07/index.md @@ -314,11 +314,11 @@ The most recent version of CloudMan was [released in January 2014](/news/cloudma

-One new [Log Board entry](/blog/) was added in June: +One new [Log Board entry](/news/) was added in June: -* [Local Tool Shed with https and LDAP](/blog/2014-06-toolshed-with-https-and-ldap/) +* [Local Tool Shed with https and LDAP](/news/2014-06-toolshed-with-https-and-ldap/) -The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/blog/) you want to share then please publish them. +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/news/) you want to share then please publish them.

Galaxy ToolShed
diff --git a/content/galaxy-updates/2014-08/index.md b/content/galaxy-updates/2014-08/index.md index b6ad717612..42605230d7 100644 --- a/content/galaxy-updates/2014-08/index.md +++ b/content/galaxy-updates/2014-08/index.md @@ -367,9 +367,9 @@ Because this vulnerability allows for arbitrary code execution, administrators a

-**There were no new [Log Board](/blog/) or Deployment Catalog entries in July!** Eek! Please don't let this happen again! +**There were no new [Log Board](/news/) or Deployment Catalog entries in July!** Eek! Please don't let this happen again! -The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/blog/) you want to share then please publish them **this month.** +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/news/) you want to share then please publish them **this month.**

Galaxy ToolShed
diff --git a/content/galaxy-updates/2014-09/index.md b/content/galaxy-updates/2014-09/index.md index f8c0bd2cc0..bd892de891 100644 --- a/content/galaxy-updates/2014-09/index.md +++ b/content/galaxy-updates/2014-09/index.md @@ -435,9 +435,9 @@ Eric & Björn

-**There were no new [Log Board](/blog/) or Deployment Catalog entries in August!** Eek! Please don't let this happen again! +**There were no new [Log Board](/news/) or Deployment Catalog entries in August!** Eek! Please don't let this happen again! -The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/blog/) you want to share then please publish them **this month.** +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/news/) you want to share then please publish them **this month.**

Galaxy ToolShed
diff --git a/content/galaxy-updates/2014-10/index.md b/content/galaxy-updates/2014-10/index.md index 1eefe1cd2d..a93c1b77d3 100644 --- a/content/galaxy-updates/2014-10/index.md +++ b/content/galaxy-updates/2014-10/index.md @@ -273,9 +273,9 @@ See "[MIRPIPE – quantification of microRNAs in niche model organisms](http://b Overview of Galaxy on Bio-Linux 8 -The deployment details for the [GalaxEast public server](/use/galaxeast/) were posted in September. Tracey Timms-Wilson's (of the [NERC Environmental 'Omics Synthesis Centre](http://environmentalomics.org/)) [Overview of Galaxy on Bio-Linux 8](http://environmentalomics.org/bio-linux-galaxy/) page was also added to the [Community Log Board](/blog/). +The deployment details for the [GalaxEast public server](/use/galaxeast/) were posted in September. Tracey Timms-Wilson's (of the [NERC Environmental 'Omics Synthesis Centre](http://environmentalomics.org/)) [Overview of Galaxy on Bio-Linux 8](http://environmentalomics.org/bio-linux-galaxy/) page was also added to the [Community Log Board](/news/). -The *Deployment Catalog* and *[Community Log Board](/blog/)* *[Galaxy community hubs](/community/)* were launched in 2013. If you have a Galaxy deployment, or [experience](/blog/) you want to share then please publish them **this month.** +The *Deployment Catalog* and *[Community Log Board](/news/)* *[Galaxy community hubs](/community/)* were launched in 2013. If you have a Galaxy deployment, or [experience](/news/) you want to share then please publish them **this month.**

Galaxy ToolShed
diff --git a/content/galaxy-updates/2014-11/index.md b/content/galaxy-updates/2014-11/index.md index 7fbe4b6163..a552454278 100644 --- a/content/galaxy-updates/2014-11/index.md +++ b/content/galaxy-updates/2014-11/index.md @@ -331,9 +331,9 @@ The [OSDD Molecular Property Diagnostic Suite (MPDS)](http://mpds.osdd.net/) Gal

-**There were no new [Log Board](/blog/) or Deployment Catalog entries in August!** Eek! Please don't let this happen again! +**There were no new [Log Board](/news/) or Deployment Catalog entries in August!** Eek! Please don't let this happen again! -The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/blog/) you want to share then please publish them **this month.** +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/news/) you want to share then please publish them **this month.**

Galaxy ToolShed
diff --git a/content/galaxy-updates/2014-12/index.md b/content/galaxy-updates/2014-12/index.md index 0443fcffff..c13b99f113 100644 --- a/content/galaxy-updates/2014-12/index.md +++ b/content/galaxy-updates/2014-12/index.md @@ -327,9 +327,9 @@ Two new [public Galaxy servers](/use/) were announced in November:

-**There were no new [Log Board](/blog/) or Deployment Catalog entries in November!** Eek! Please don't let this happen again! +**There were no new [Log Board](/news/) or Deployment Catalog entries in November!** Eek! Please don't let this happen again! -The *[Community Log Board](/blog/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/blog/) you want to share then please publish them **this month.** +The *[Community Log Board](/news/)* and *Deployment Catalog* *[Galaxy community hubs](/community/)* were launched last your. If you have a Galaxy deployment, or [experience](/news/) you want to share then please publish them **this month.** # New Releases diff --git a/content/galaxy-updates/2015-03/index.md b/content/galaxy-updates/2015-03/index.md index 225dff6955..b2f17b665e 100644 --- a/content/galaxy-updates/2015-03/index.md +++ b/content/galaxy-updates/2015-03/index.md @@ -392,7 +392,7 @@ One new [public Galaxy servers](/use/) was added in February:
-Two new [Community Log Board](/blog/) entires were added in February: +Two new [Community Log Board](/news/) entires were added in February: * [FTP upload to Galaxy using ProFTPd and PBKDF2](http://galacticengineer.blogspot.co.uk/2015/02/ftp-upload-to-galaxy-using-proftpd-and.html) * ProFTPd implemented using PBKFD2 protocol for encryption, by [Peter Briggs](http://www.ls.manchester.ac.uk/people/profile/?alias=briggsp) diff --git a/content/galaxy-updates/2015-04/index.md b/content/galaxy-updates/2015-04/index.md index 6d44a3dd70..d73916acff 100644 --- a/content/galaxy-updates/2015-04/index.md +++ b/content/galaxy-updates/2015-04/index.md @@ -397,7 +397,7 @@ One new [public Galaxy server](/use/) was added in March:
-One new [Community Log Board](/blog/) entry was added in March: +One new [Community Log Board](/news/) entry was added in March: * [Installing ANNOVAR in Galaxy](http://galacticengineer.blogspot.co.uk/2015/03/installing-annovar-in-galaxy.html) by [Peter Briggs](http://www.ls.manchester.ac.uk/people/profile/?alias=briggsp) diff --git a/content/galaxy-updates/2015-05/index.md b/content/galaxy-updates/2015-05/index.md index 00e6e63478..6cc9f387dd 100644 --- a/content/galaxy-updates/2015-05/index.md +++ b/content/galaxy-updates/2015-05/index.md @@ -429,7 +429,7 @@ Got a Galaxy-related opening? Send it to outreach@galaxyproject.org and we'll pu
-One new [Community Log Board](/blog/) entry was added in April: +One new [Community Log Board](/news/) entry was added in April: * [Using GALAXY_SLOTS with multithreaded Galaxy tools ](http://galacticengineer.blogspot.co.uk/2015/04/using-galaxyslots-for-multithreaded_22.html) by [Peter Briggs](http://www.ls.manchester.ac.uk/people/profile/?alias=briggsp) diff --git a/content/galaxy-updates/2015-08/index.md b/content/galaxy-updates/2015-08/index.md index 7d51ad596d..199ea9bcfb 100644 --- a/content/galaxy-updates/2015-08/index.md +++ b/content/galaxy-updates/2015-08/index.md @@ -411,9 +411,9 @@ Galaxy now has a formal and open policy for managing the project source code - i
-Three new **[Community Log Board](/blog/)** entries were added in July: +Three new **[Community Log Board](/news/)** entries were added in July: -* **[Moving from MySQL to PostgreSQL](/blog/2015-07-mysql-2-postgresql/)** +* **[Moving from MySQL to PostgreSQL](/news/2015-07-mysql-2-postgresql/)** by [Hans-Rudolf Hotz](/people/hansrudolf-hotz/) * **[BioJS2Galaxy – A step by step guide](http://www.benjamenwhite.com/2015/07/biojs2galaxy-a-step-by-step-guide/)** diff --git a/content/galaxy-updates/2015-11/index.md b/content/galaxy-updates/2015-11/index.md index 889432c321..c739eb5dea 100644 --- a/content/galaxy-updates/2015-11/index.md +++ b/content/galaxy-updates/2015-11/index.md @@ -476,7 +476,7 @@ Planemo is a set of command-line utilities to assist in building tools for the G * **University of Minnesota Minnesota Supercomputing Institute Research Informatics Solutions** [RIS](https://www.msi.umn.edu/about/staff/riss) is a group of experienced bioinformatics experts within the Supercomputing Institute at the University of Minnesota. -And 2 new **[Community Log Board](/blog/)** entries were added as well. Both are about wrapping Tools for Galaxy: +And 2 new **[Community Log Board](/news/)** entries were added as well. Both are about wrapping Tools for Galaxy: * **[Galaxy Tool Generating Dataset Collections](http://web.science.mq.edu.au/~cassidy/2015/10/21/galaxy-tool-generating-datasets/)** [Steve Cassidy](http://web.science.mq.edu.au/~cassidy/wordpress/about-steve-cassidy/) documented how create dataset collections in Galaxy tool definitions. (And [Alveo](http://alveo.edu.au/) is also a cool, non-life science application of Galaxy.) diff --git a/content/galaxy-updates/2016-04/index.md b/content/galaxy-updates/2016-04/index.md index f4bc450ac8..8f3847bd3d 100644 --- a/content/galaxy-updates/2016-04/index.md +++ b/content/galaxy-updates/2016-04/index.md @@ -427,7 +427,7 @@ Got a Galaxy-related opening? Send it to outreach@galaxyproject.org and we'll pu
-Two new [Community Log entries](/blog/) were added in March +Two new [Community Log entries](/news/) were added in March * **[Testing connexion between Galaxy and iRODS](https://urgi.versailles.inra.fr/content/download/5169/39254/file/galaxy_irods.pdf)** by Mikael Loaec and Olivier Inizan * **[Setting up Galaxy with TORQUE on AWS](https://gist.github.com/kantale/b7fecd62da22a1523aa2)** by [Alex Kanterakis](https://gist.github.com/kantale) diff --git a/content/galaxy-updates/2016-07/index.md b/content/galaxy-updates/2016-07/index.md index cd87b7a137..ef2c2b4ec6 100644 --- a/content/galaxy-updates/2016-07/index.md +++ b/content/galaxy-updates/2016-07/index.md @@ -458,7 +458,7 @@ And one [new set of Semi-Public Galaxy server](/use/) was added in June. Semi-p
-One new [community log board entry](/blog/) was added: +One new [community log board entry](/news/) was added: * [Running jobs outside the Galaxy Docker container](https://github.com/bgruening/docker-galaxy-stable/blob/dev/docs/Running_jobs_outside_of_the_container.md) by [Marius van den Beek](https://github.com/mvdbeek). diff --git a/content/galaxy-updates/2016-08/index.md b/content/galaxy-updates/2016-08/index.md index ddce05e541..fe621a3c1e 100644 --- a/content/galaxy-updates/2016-08/index.md +++ b/content/galaxy-updates/2016-08/index.md @@ -348,7 +348,7 @@ There are [over 80 publicly accessible Galaxy servers](/use/) and [four semi-pub Public Health Agency of Canada - National Microbiology Laboratory -New Galaxy Deployment Catalog and [Community Log Board](/blog/) entries were added: +New Galaxy Deployment Catalog and [Community Log Board](/news/) entries were added: * The Public Health Agency of Canada - National Microbiology Laboratory Galaxy server helps identify, prevent and control infectious diseases. diff --git a/content/galaxy-updates/2017-11/index.md b/content/galaxy-updates/2017-11/index.md index b84b3dadac..d5cc9d605a 100644 --- a/content/galaxy-updates/2017-11/index.md +++ b/content/galaxy-updates/2017-11/index.md @@ -9,29 +9,29 @@ Welcome to the November 2017 *[Galactic News](/galaxy-updates/)*, a summary of w # The Galactic Blog -[The Galactic Blog is born](/blog/) +[The Galactic Blog is born](/news/) -The new *[Galactic Blog](/blog/)* was launched in October. The *Galactic Blog* is a place for longer-form posts that are relevant to Galaxy. (See [Galaxy News](/news/) for shorter-form items.) The *Galactic Blog* replaces the former *Community Log* and includes all content from it, which is why, even though the blog is new, it includes entries back to 2013. +The new *[Galactic Blog](/news/)* was launched in October. The *Galactic Blog* is a place for longer-form posts that are relevant to Galaxy. (See [Galaxy News](/news/) for shorter-form items.) The *Galactic Blog* replaces the former *Community Log* and includes all content from it, which is why, even though the blog is new, it includes entries back to 2013. The blog is off to a running start with these posts in October: -* [ELIXIR Galaxy Community](/blog/2017-10-05-elixir-galaxy-community/), by Frederik Coppens, Gildas Le Corguillé, and [Björn Grüning](/people/bjoern-gruening/) -* [Public Galaxy Server Dashboard](/blog/2017-10-public-galaxy-dashboard/), by [Helena Rasche](/people/helena-rasche/) -* [SciPy and scikit-learn integration into Galaxy](/blog/2017-10-10-scipy-galaxy/), by [Björn Grüning](/people/bjoern-gruening/) -* [Small genome assembly in Galaxy](/blog/2017-10-16-unicycler-tutorial/), by [Anton Nekrutenko](/people/anton/) -* [Galaxy: the first 5,000 pubs](/blog/2017-10-5000-pubs/), by [Dave Clements](/people/dave-clements/) +* [ELIXIR Galaxy Community](/news/2017-10-05-elixir-galaxy-community/), by Frederik Coppens, Gildas Le Corguillé, and [Björn Grüning](/people/bjoern-gruening/) +* [Public Galaxy Server Dashboard](/news/2017-10-public-galaxy-dashboard/), by [Helena Rasche](/people/helena-rasche/) +* [SciPy and scikit-learn integration into Galaxy](/news/2017-10-10-scipy-galaxy/), by [Björn Grüning](/people/bjoern-gruening/) +* [Small genome assembly in Galaxy](/news/2017-10-16-unicycler-tutorial/), by [Anton Nekrutenko](/people/anton/) +* [Galaxy: the first 5,000 pubs](/news/2017-10-5000-pubs/), by [Dave Clements](/people/dave-clements/) ## The Galactic Blog needs you! The Galaxy community needs to know what you are doing. If you have done something that others would benefit from knowing then please create a *Galactic Blog* post describing your experiences. -Blog posts can either be directly created on the Hub, or can be posted on your favorite blogging platform and linked to from the [Blog home page](/blog/). See [the CONTRIBUTING page](https://github.com/galaxyproject/galaxy-hub/blob/master/CONTRIBUTING.md#blog-metadata) for how. +Blog posts can either be directly created on the Hub, or can be posted on your favorite blogging platform and linked to from the [Blog home page](/news/). See [the CONTRIBUTING page](https://github.com/galaxyproject/galaxy-hub/blob/master/CONTRIBUTING.md#blog-metadata) for how. Questions? [Ask us](mailto:outreach@galaxyproject.org). # Publications -The Galaxy Publication Library [surpassed 5,000 publications](/blog/2017-10-5000-pubs/), in October. It was a good month for publications in other ways too: +The Galaxy Publication Library [surpassed 5,000 publications](/news/2017-10-5000-pubs/), in October. It was a good month for publications in other ways too: ## Highlighted Publications diff --git a/content/galaxy-updates/2017-12/index.md b/content/galaxy-updates/2017-12/index.md index 8191aa4f41..9db1acf72c 100644 --- a/content/galaxy-updates/2017-12/index.md +++ b/content/galaxy-updates/2017-12/index.md @@ -169,12 +169,12 @@ See the [Galaxy Events Google Calendar](http://bit.ly/gxycal) for details on oth # New Galactic Blog Entries -[The Galactic Blog is born](/blog/) +[The Galactic Blog is born](/news/) -We've got two new *[Galactic Blog](/blog/)* entries: +We've got two new *[Galactic Blog](/news/)* entries: * [Setup your own instance of the Galaxy Bioinformatics platform on DigitalOcean](https://vimal.io/setup-your-own-galaxy-bioinformatics-instance-on-digitalocean/), by [Vimalkumar Velayudhan](https://vimal.io/) -* [Galaxy Docker 17.09](/blog/2017-11-galaxy-docker-17-09/), by [Björn Grüning](/people/bjoern-gruening/) +* [Galaxy Docker 17.09](/news/2017-11-galaxy-docker-17-09/), by [Björn Grüning](/people/bjoern-gruening/) The *Galactic Blog* is a place for longer-form posts that are relevant to Galaxy. (See [Galaxy News](/news/) for shorter-form items.) @@ -182,7 +182,7 @@ The *Galactic Blog* is a place for longer-form posts that are relevant to Galaxy The Galaxy community needs to know what you are doing. If you have done something that others would benefit from knowing then please create a *Galactic Blog* post describing your experiences. -Blog posts can either be directly created on the Hub, or can be posted on your favorite blogging platform and linked to from the [Blog home page](/blog/). See [the CONTRIBUTING page](https://github.com/galaxyproject/galaxy-hub/blob/master/CONTRIBUTING.md#blog-metadata) for how. +Blog posts can either be directly created on the Hub, or can be posted on your favorite blogging platform and linked to from the [Blog home page](/news/). See [the CONTRIBUTING page](https://github.com/galaxyproject/galaxy-hub/blob/master/CONTRIBUTING.md#blog-metadata) for how. Questions? [Ask us](mailto:outreach@galaxyproject.org). diff --git a/content/galaxy-updates/2018-01/index.md b/content/galaxy-updates/2018-01/index.md index b6f4965586..2043562982 100644 --- a/content/galaxy-updates/2018-01/index.md +++ b/content/galaxy-updates/2018-01/index.md @@ -216,13 +216,13 @@ See the [Galaxy Events Google Calendar](http://bit.ly/gxycal) for details on oth # New Galactic Blog Entries: Galaksio
-[Galactic Blog](/blog/)

-[Galaksio in the Galactic Blog](/blog/) +[Galactic Blog](/news/)

+[Galaksio in the Galactic Blog](/news/)
-We've got two new *[Galactic Blog](/blog/)* entries, both related to [Galaksio](https://galaksio.readthedocs.io/en/latest/): +We've got two new *[Galactic Blog](/news/)* entries, both related to [Galaksio](https://galaksio.readthedocs.io/en/latest/): -- [Galaksio: a Galaxy user interface focused on running prepared workflows](/blog/2017-12-galaksio/), by Tomas Klingström +- [Galaksio: a Galaxy user interface focused on running prepared workflows](/news/2017-12-galaksio/), by Tomas Klingström - [Bioinformatic training with the B3Africa project](https://usegalaxy-eu.github.io/galaxy-freiburg/2017/12/10/b3africa.html), by Tomas Klingström The *Galactic Blog* is a place for longer-form posts that are relevant to Galaxy. (See [Galaxy News](/news/) for shorter-form items.) diff --git a/content/galaxy-updates/2018-02/index.md b/content/galaxy-updates/2018-02/index.md index 31dd7ffac5..c3dfef8f76 100644 --- a/content/galaxy-updates/2018-02/index.md +++ b/content/galaxy-updates/2018-02/index.md @@ -227,10 +227,10 @@ Plenty of materials for Galaxy administration are now [up to date and available # New Galactic Blog Entry: Galaxy R Markdown Tools
-[Galactic Blog](/blog/) +[Galactic Blog](/news/)
-January saw one new *[Galactic Blog](/blog/)* entry: +January saw one new *[Galactic Blog](/news/)* entry: * [Galaxy R Markdown Tools](https://github.com/statonlab/galaxy-r-markdown-tools), by Ming Chen diff --git a/content/galaxy-updates/2018-03/index.md b/content/galaxy-updates/2018-03/index.md index 89f26832cf..95557308cc 100644 --- a/content/galaxy-updates/2018-03/index.md +++ b/content/galaxy-updates/2018-03/index.md @@ -245,10 +245,10 @@ These and [other Galaxy related events](/events/) coming up in the next few mon # New Galactic Blog Entry: Coding in the Winter Wonderland: Galaxy Admin Training
-[Galactic Blog](/blog/) +[Galactic Blog](/news/)
-February had one new *[Galactic Blog](/blog/)* entry: +February had one new *[Galactic Blog](/news/)* entry: * [Coding in the Winter Wonderland: Galaxy Admin Training in Oslo, 2018](https://arundecano.wordpress.com/2018/02/01/coding-in-the-winter-wonderland-galaxy-admin-training-in-oslo-2018/), by Arun Decano diff --git a/content/galaxy-updates/2018-08/index.md b/content/galaxy-updates/2018-08/index.md index ff92829cff..80da4d1ba2 100644 --- a/content/galaxy-updates/2018-08/index.md +++ b/content/galaxy-updates/2018-08/index.md @@ -359,14 +359,14 @@ Have a Galaxy-related opening? Send it to outreach@galaxyproject.org and we'll p # New Galactic Blog Entries
-[Galactic Blog](/blog/) +[Galactic Blog](/news/)
-There are two new *[Galactic Blog](/blog/)* entry: +There are two new *[Galactic Blog](/news/)* entry: -* [A fruitful year for the Galaxy Training material](/blog/2018-06-training-material/), by Bérénice Batut +* [A fruitful year for the Galaxy Training material](/news/2018-06-training-material/), by Bérénice Batut * A summary of recent developments in Galaxy Training materials and the Galaxy Training Network -* [Contributor of the Month: Pablo Moreno](/blog/2018-08-cotm-pablo-moreno/), By Björn Grüning +* [Contributor of the Month: Pablo Moreno](/news/2018-08-cotm-pablo-moreno/), By Björn Grüning * The first of a monthly series highlighting Galaxy contributors. # Public Galaxy Server News diff --git a/content/galaxy-updates/index.md b/content/galaxy-updates/index.md index 3dbfd6750b..af613cb92e 100644 --- a/content/galaxy-updates/index.md +++ b/content/galaxy-updates/index.md @@ -10,7 +10,6 @@ title: Galaxy Updates * The [News](/news/) * [Galaxy Development News Briefs](/docs/) -* [Galactic Blog](/blog/) * [Galaxy on Twitter](/galaxy-on-twitter/) * [Mailing Lists](/mailing-lists/) diff --git a/content/genouest/news/main.md b/content/genouest/news/main.md index 9abd0eb0ff..e5c639587b 100644 --- a/content/genouest/news/main.md +++ b/content/genouest/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/get-involved/index.md b/content/get-involved/index.md index d7ca110aa5..d5fbad95d3 100644 --- a/content/get-involved/index.md +++ b/content/get-involved/index.md @@ -68,7 +68,7 @@ If and when you [setup your own Galaxy instance](/admin/get-galaxy/), you can ma Galactic Blog -The [Galactic Blog](/blog/) features Galaxy related blog posts from community members. The blog contains longer form posts or pointers to longer form posts that are elsewhere on the web. +The [Galactic Blog](/news/) features Galaxy related blog posts from community members. The blog contains longer form posts or pointers to longer form posts that are elsewhere on the web. # Documentation diff --git a/content/home/education.yml b/content/home/education.yml index 01a4378bc5..8d8a0a91ac 100644 --- a/content/home/education.yml +++ b/content/home/education.yml @@ -18,10 +18,10 @@ education: icon: fas fa-sitemap url: https://training.galaxyproject.org/training-material/workflows/list -- title: Blog - content: Read highlights from the experts. - icon: fas fa-comment - url: /blog/ +- title: News + content: Read highlights from the community. + icon: fas fa-newspaper + url: /news/ - title: Data content: Pull data from popular repositories. diff --git a/content/ifb/news/main.md b/content/ifb/news/main.md index 9f4c62a69a..ebf8036151 100644 --- a/content/ifb/news/main.md +++ b/content/ifb/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/navbar.yml b/content/navbar.yml index a29f686a80..7356d50088 100644 --- a/content/navbar.yml +++ b/content/navbar.yml @@ -30,8 +30,6 @@ right: target: "/community/contributing/" - label: Galaxy Mentor Network target: https://galaxy-mentor-network.netlify.app/ - - label: Blog - target: "/blog/" - label: Code of Conduct target: "/community/coc/" - label: About diff --git a/content/blog/2013-01-launch-customizedmod-encode-galaxy-on-aws/index.md b/content/news/2013-01-launch-customizedmod-encode-galaxy-on-aws/index.md similarity index 100% rename from content/blog/2013-01-launch-customizedmod-encode-galaxy-on-aws/index.md rename to content/news/2013-01-launch-customizedmod-encode-galaxy-on-aws/index.md diff --git a/content/blog/2013-01-taverna-2-workflow/index.md b/content/news/2013-01-taverna-2-workflow/index.md similarity index 100% rename from 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b/content/news/2017-10-16-unicycler-tutorial/unicycler_logo.png similarity index 100% rename from content/blog/2017-10-16-unicycler-tutorial/unicycler_logo.png rename to content/news/2017-10-16-unicycler-tutorial/unicycler_logo.png diff --git a/content/blog/2017-10-5000-pubs/5000-pubs.png b/content/news/2017-10-5000-pubs/5000-pubs.png similarity index 100% rename from content/blog/2017-10-5000-pubs/5000-pubs.png rename to content/news/2017-10-5000-pubs/5000-pubs.png diff --git a/content/blog/2017-10-5000-pubs/index.md b/content/news/2017-10-5000-pubs/index.md similarity index 99% rename from content/blog/2017-10-5000-pubs/index.md rename to content/news/2017-10-5000-pubs/index.md index afb5997022..d7b7b4a166 100644 --- a/content/blog/2017-10-5000-pubs/index.md +++ b/content/news/2017-10-5000-pubs/index.md @@ -393,7 +393,7 @@ The last trend I want to highlight is about *Reproducibility*. Reproducibility h ## Publications per year -[Publications published in each year, as of 2017/10](/blog/2017-10-5000-pubs/pubs-per-year.png) +[Publications published in each year, as of 2017/10](/news/2017-10-5000-pubs/pubs-per-year.png) **The number of publications that reference Galaxy each year has increased every year since the project started.** It took [over three and a half years to reach 2,500 publications](/news/first2500-papers/) but only a little over two more years to add the next 2,500 publications. diff --git a/content/blog/2017-10-5000-pubs/pubs-per-year.png b/content/news/2017-10-5000-pubs/pubs-per-year.png similarity index 100% rename from content/blog/2017-10-5000-pubs/pubs-per-year.png rename to content/news/2017-10-5000-pubs/pubs-per-year.png diff --git a/content/blog/2017-10-a-blog-is-born/index.md b/content/news/2017-10-a-blog-is-born/index.md similarity index 81% rename from content/blog/2017-10-a-blog-is-born/index.md rename to content/news/2017-10-a-blog-is-born/index.md index 6be0dd1632..cc49909b66 100644 --- a/content/blog/2017-10-a-blog-is-born/index.md +++ b/content/news/2017-10-a-blog-is-born/index.md @@ -6,11 +6,11 @@ image: /images/galaxy-logos/galactic-blog-400.png authors: "Dave Clements" --- -Today we launch the new *[Galactic Blog](/blog/)*. +Today we launch the new *[Galactic Blog](/news/)*. The *Galactic Blog* is a place for longer-form posts that are relevant to Galaxy. (See [Galaxy News](/news/) for shorter-form items.) -**Our very first post is about the [ELIXIR Galaxy Community](/blog/2017-10-05-elixir-galaxy-community/) and was written by Frederik Coppens, Gildas Le Corguillé, and [Björn Grüning](/people/bjoern-gruening/).** +**Our very first post is about the [ELIXIR Galaxy Community](/news/2017-10-05-elixir-galaxy-community/) and was written by Frederik Coppens, Gildas Le Corguillé, and [Björn Grüning](/people/bjoern-gruening/).** The *Galactic Blog* replaces the former *Community Log* and includes all content from it, which is why, even though the blog is new, it includes entries back to 2013. @@ -18,6 +18,6 @@ The *Galactic Blog* replaces the former *Community Log* and includes all content The Galaxy community needs to know what you are doing. If you done something that others would benefit from then please think about creating a *Galactic Blog* post describing your experiences. -Blog posts can either be directly created to the Hub, or can be posted on your favorite blogging platform and linked to from the [Blog home page](/blog/). See [the CONTRIBUTING page](https://github.com/galaxyproject/galaxy-hub/blob/master/CONTRIBUTING.md#blog-metadata) for how. +Blog posts can either be directly created to the Hub, or can be posted on your favorite blogging platform and linked to from the [Blog home page](/news/). See [the CONTRIBUTING page](https://github.com/galaxyproject/galaxy-hub/blob/master/CONTRIBUTING.md#blog-metadata) for how. Questions? [Ask us](mailto:outreach@galaxyproject.org). diff --git a/content/blog/2017-10-public-galaxy-dashboard/dashboard-details.png b/content/news/2017-10-public-galaxy-dashboard/dashboard-details.png similarity index 100% rename from content/blog/2017-10-public-galaxy-dashboard/dashboard-details.png rename to content/news/2017-10-public-galaxy-dashboard/dashboard-details.png diff --git a/content/blog/2017-10-public-galaxy-dashboard/dashboard-landing.png b/content/news/2017-10-public-galaxy-dashboard/dashboard-landing.png similarity index 100% rename from content/blog/2017-10-public-galaxy-dashboard/dashboard-landing.png rename to content/news/2017-10-public-galaxy-dashboard/dashboard-landing.png diff --git a/content/blog/2017-10-public-galaxy-dashboard/index.md b/content/news/2017-10-public-galaxy-dashboard/index.md similarity index 96% rename from content/blog/2017-10-public-galaxy-dashboard/index.md rename to content/news/2017-10-public-galaxy-dashboard/index.md index 369aacbbd6..c50d319e01 100644 --- a/content/blog/2017-10-public-galaxy-dashboard/index.md +++ b/content/news/2017-10-public-galaxy-dashboard/index.md @@ -5,7 +5,7 @@ tease: "a new view of the Universe" authors: "Helena Rasche" --- -[Public Galaxy Server Dashboard](https://stats.galaxyproject.eu/dashboard/db/public-galaxy-servers) +[Public Galaxy Server Dashboard](https://stats.galaxyproject.eu/dashboard/db/public-galaxy-servers) ## History @@ -17,7 +17,7 @@ server lists to request non-sensitive information about their configuration. E.g. what "brand" do they have configured, how many allow users to purge datasets, how many have quotas enabled. -[Public Galaxy Server Dashboard](https://stats.galaxyproject.eu/dashboard-solo/snapshot/7pgA1b2OcA0UBteiMx1h5bPlwh7Kzv95?orgId=1&panelId=11) +[Public Galaxy Server Dashboard](https://stats.galaxyproject.eu/dashboard-solo/snapshot/7pgA1b2OcA0UBteiMx1h5bPlwh7Kzv95?orgId=1&panelId=11) ## Dashboards diff --git a/content/blog/2017-11-galaxy-docker-17.09/index.md b/content/news/2017-11-galaxy-docker-17.09/index.md similarity index 100% rename from content/blog/2017-11-galaxy-docker-17.09/index.md rename to content/news/2017-11-galaxy-docker-17.09/index.md diff --git a/content/blog/2017-12-b3africa-training/index.md b/content/news/2017-12-b3africa-training/index.md similarity index 100% rename from content/blog/2017-12-b3africa-training/index.md rename to content/news/2017-12-b3africa-training/index.md diff --git a/content/blog/2017-12-galaksio/galaksio-layers.png b/content/news/2017-12-galaksio/galaksio-layers.png similarity index 100% rename from content/blog/2017-12-galaksio/galaksio-layers.png rename to content/news/2017-12-galaksio/galaksio-layers.png diff --git a/content/blog/2017-12-galaksio/index.md b/content/news/2017-12-galaksio/index.md similarity index 98% rename from content/blog/2017-12-galaksio/index.md rename to content/news/2017-12-galaksio/index.md index c3fc911c58..fe1da78385 100644 --- a/content/blog/2017-12-galaksio/index.md +++ b/content/news/2017-12-galaksio/index.md @@ -49,7 +49,7 @@ The key contribution of the Galaksio interface is that it provides bioinformatic A Galaksio interface is always pointing towards a Galaxy server which hosts all the data and executes the workflows. During testing we have operated with our own locally hosted Galaxy server but also tested it using usegalaxy.org and even [organised a training workshop](https://usegalaxy-eu.github.io/galaxy-freiburg/2017/12/10/b3africa.html) with the support of the Freiburg Galaxy Team using the galaxy.uni-freiburg server. The benefit of this set up is that any Galaxy server which provides API access can be provided with a Galaksio interface without any modifications to the server itself. Meaning that Galaksio is easy to add to existing Galaxy server in order to improve access to best practice workflows or complex tool packages. -[Galaksio layers: Figure 1, image from the article Galaksio, a user friendly workflow-centric front end for Galaxy (https://doi.org/10.14806/ej.23.0.897).](https://doi.org/10.14806/ej.23.0.897) +[Galaksio layers: Figure 1, image from the article Galaksio, a user friendly workflow-centric front end for Galaxy (https://doi.org/10.14806/ej.23.0.897).](https://doi.org/10.14806/ej.23.0.897) Figure 1, image from the article "Galaksio, a user friendly workflow-centric front end for Galaxy" (https://doi.org/10.14806/ej.23.0.897). diff --git a/content/blog/2017-12-galaxy-on-digitalocean/index.md b/content/news/2017-12-galaxy-on-digitalocean/index.md similarity index 100% rename from content/blog/2017-12-galaxy-on-digitalocean/index.md rename to content/news/2017-12-galaxy-on-digitalocean/index.md diff --git a/content/blog/2018-01-galaxy-r-markdown-tools/index.md b/content/news/2018-01-galaxy-r-markdown-tools/index.md similarity index 100% rename from content/blog/2018-01-galaxy-r-markdown-tools/index.md rename to content/news/2018-01-galaxy-r-markdown-tools/index.md diff --git a/content/blog/2018-02-admin-oslo/index.md b/content/news/2018-02-admin-oslo/index.md similarity index 100% rename from content/blog/2018-02-admin-oslo/index.md rename to content/news/2018-02-admin-oslo/index.md diff --git a/content/blog/2018-06-training-material/contribution_fests.png b/content/news/2018-06-training-material/contribution_fests.png similarity index 100% rename from content/blog/2018-06-training-material/contribution_fests.png rename to content/news/2018-06-training-material/contribution_fests.png diff --git a/content/blog/2018-06-training-material/contribution_fests.svg b/content/news/2018-06-training-material/contribution_fests.svg similarity index 100% rename from content/blog/2018-06-training-material/contribution_fests.svg rename to content/news/2018-06-training-material/contribution_fests.svg diff --git a/content/blog/2018-06-training-material/cover_art.png b/content/news/2018-06-training-material/cover_art.png similarity index 100% rename from content/blog/2018-06-training-material/cover_art.png rename to content/news/2018-06-training-material/cover_art.png diff --git a/content/blog/2018-06-training-material/hall_of_fame.png b/content/news/2018-06-training-material/hall_of_fame.png similarity index 100% rename from content/blog/2018-06-training-material/hall_of_fame.png rename to content/news/2018-06-training-material/hall_of_fame.png diff --git a/content/blog/2018-06-training-material/index.md b/content/news/2018-06-training-material/index.md similarity index 96% rename from content/blog/2018-06-training-material/index.md rename to content/news/2018-06-training-material/index.md index 0e44003349..92d7d86048 100644 --- a/content/blog/2018-06-training-material/index.md +++ b/content/news/2018-06-training-material/index.md @@ -15,7 +15,7 @@ This project was started in 2016 and was presented for the first time during the # Content: New + Restructed Topics and Tutorials -New content +New content During the past year, two new topics have been added: @@ -45,7 +45,7 @@ We are still in discussions with the Galaxy Admin instructors to integrate the c An effort has also been made to support more the tutorials with their required tools in `tools.yaml`, workflows, data on Zenodo and referenced in `data-library.yaml`, and interactive tours: -Proportion of support on the hands-on +Proportion of support on the hands-on ## Tours @@ -55,7 +55,7 @@ The development of the interactive tours has been facilitated with the developme The `tools.yaml` file of each tutorial is used to check which public Galaxy instances could be used to run the tutorial. This information is displayed on the top of the tutorial and in the topic page: -Galaxy instances +Galaxy instances Accompanying the annotation, we also offer for each instance a collection of badges denoting compatibility with training materials ([https://training.galaxyproject.org/badges](https://training.galaxyproject.org/badges)). These badges can then be displayed on the instance homepages. @@ -63,7 +63,7 @@ Accompanying the annotation, we also offer for each instance a collection of bad The European Galaxy server ([http://usegalaxy.eu](http://usegalaxy.eu)) is going one step further in the support for training. It offers Training Infrastructure as a Service (TIaaS). An organizer of a training workshop can ask for dedicated computing resources (dedicated queue and nodes on the cluster) for the trainees during the workshop. It is totally transparent for the workshop participants: they uses the UseGalaxy.eu instance as a normal user, but in the backend their jobs are automatically submitted to a dedicated queue. At the end of the workshop, the trainees are placed again on the normal queue: -TIasS +TIasS ## Docker Images @@ -73,11 +73,11 @@ More Docker images are offered to support the training. These Docker images, one The website can now be accessed from [https://training.galaxyproject.org](https://training.galaxyproject.org), which redirects to [http://galaxyproject.github.io/training-material](http://galaxyproject.github.io/training-material). An effort has been made to reshape the website: -Website reshape +Website reshape We have also added some expandable boxes for the solutions of the question or more detail boxes. To help in the choice of the tutorials within a topic, we have added the possibility to tag the tutorials directly inside the `metadata.yaml`. The tags appear on the topic page, right below the title of the tutorial: -tag +tag Each training webpage is now annotated with some metadata using the JSON-LD representation of [schema.org](https://schema.org/)'s [CreativeWork](https://schema.org/CreativeWork) vocabulary. This annotation will help the search engines by providing them structured information on our training materials and tutorials, exposing information like title and authorship in a way that they can easily consume and display to their users. @@ -95,13 +95,13 @@ So we are happy to say that the article has been published on the [June issue](h This last year has been a success because of the community. Currently, >70 people have contributed at least once to the training material (>30 new contributors compared to last year). To highlight this awesome community, we have created a contributor [Hall of Fame](https://training.galaxyproject.org/hall-of-fame): -Hall of Fame page and slide show on homepage +Hall of Fame page and slide show on homepage Each contributor is depicted by their GitHub profile image and can add information such as email, Gitter, Twitter, Linkedin, ORCID. Clicking on the images leads to the GitHub profile. To make this Hall of Fame visible on the homepage, we also added a little slide show on the homepage that cycles through all the contributors. The new contributors are mostly joining during the community events, such as the Contribution Fests or Hackathons: -Contribution Fests +Contribution Fests These events can be on-site, during conferencees or dedicated events; but we are also organizing online Contribution Fests (one or two days) to reach the whole community. diff --git a/content/blog/2018-06-training-material/instance_annotation.png b/content/news/2018-06-training-material/instance_annotation.png similarity index 100% rename from content/blog/2018-06-training-material/instance_annotation.png rename to content/news/2018-06-training-material/instance_annotation.png diff --git a/content/blog/2018-06-training-material/repo_content_stat_plot.png b/content/news/2018-06-training-material/repo_content_stat_plot.png similarity index 100% rename from content/blog/2018-06-training-material/repo_content_stat_plot.png rename to content/news/2018-06-training-material/repo_content_stat_plot.png diff --git a/content/blog/2018-06-training-material/tags.png b/content/news/2018-06-training-material/tags.png similarity index 100% rename from content/blog/2018-06-training-material/tags.png rename to content/news/2018-06-training-material/tags.png diff --git a/content/blog/2018-06-training-material/tech_support_prop_plot.png b/content/news/2018-06-training-material/tech_support_prop_plot.png similarity index 100% rename from content/blog/2018-06-training-material/tech_support_prop_plot.png rename to content/news/2018-06-training-material/tech_support_prop_plot.png diff --git a/content/blog/2018-06-training-material/tiaas.png b/content/news/2018-06-training-material/tiaas.png similarity index 100% rename from content/blog/2018-06-training-material/tiaas.png rename to content/news/2018-06-training-material/tiaas.png diff --git a/content/blog/2018-06-training-material/website_reshape.png b/content/news/2018-06-training-material/website_reshape.png similarity index 100% rename from content/blog/2018-06-training-material/website_reshape.png rename to content/news/2018-06-training-material/website_reshape.png diff --git a/content/blog/2018-08-cotm-pablo-moreno/index.md b/content/news/2018-08-cotm-pablo-moreno/index.md similarity index 100% rename from content/blog/2018-08-cotm-pablo-moreno/index.md rename to content/news/2018-08-cotm-pablo-moreno/index.md diff --git a/content/blog/2018-08-cotm-pablo-moreno/pablo-moreno.jpg b/content/news/2018-08-cotm-pablo-moreno/pablo-moreno.jpg similarity index 100% rename from content/blog/2018-08-cotm-pablo-moreno/pablo-moreno.jpg rename to content/news/2018-08-cotm-pablo-moreno/pablo-moreno.jpg diff --git a/content/blog/2018-08-mercurial-based-tool-install/index.md b/content/news/2018-08-mercurial-based-tool-install/index.md similarity index 100% rename from content/blog/2018-08-mercurial-based-tool-install/index.md rename to content/news/2018-08-mercurial-based-tool-install/index.md diff --git a/content/blog/2018-09-cotm-carrie-ganote/carrie-ganote.png b/content/news/2018-09-cotm-carrie-ganote/carrie-ganote.png similarity index 100% rename from content/blog/2018-09-cotm-carrie-ganote/carrie-ganote.png rename to content/news/2018-09-cotm-carrie-ganote/carrie-ganote.png diff --git a/content/blog/2018-09-cotm-carrie-ganote/index.md b/content/news/2018-09-cotm-carrie-ganote/index.md similarity index 100% rename from content/blog/2018-09-cotm-carrie-ganote/index.md rename to content/news/2018-09-cotm-carrie-ganote/index.md diff --git a/content/news/2018-09-galaxy-update/index.md b/content/news/2018-09-galaxy-update/index.md index c87ffe4c87..206a1c57af 100644 --- a/content/news/2018-09-galaxy-update/index.md +++ b/content/news/2018-09-galaxy-update/index.md @@ -233,12 +233,12 @@ Have a Galaxy-related opening? Send it to outreach@galaxyproject.org and we'll p # Contributor of the Month: Carrie Ganote
-[Galactic Blog](/blog/) +[Galactic Blog](/news/)
-There is one new *[Galactic Blog](/blog/)* entry: +There is one new *[Galactic Blog](/news/)* entry: -* [Contributor of the Month: Carrie Ganote](/blog/2018-09-cotm-carrie-ganote/), By Björn Grüning +* [Contributor of the Month: Carrie Ganote](/news/2018-09-cotm-carrie-ganote/), By Björn Grüning ---- diff --git a/content/blog/2018-09-hybrid-training/index.md b/content/news/2018-09-hybrid-training/index.md similarity index 100% rename from content/blog/2018-09-hybrid-training/index.md rename to content/news/2018-09-hybrid-training/index.md diff --git a/content/blog/2018-09-totm/from_peaks_to_genes.png b/content/news/2018-09-totm/from_peaks_to_genes.png similarity index 100% rename from content/blog/2018-09-totm/from_peaks_to_genes.png rename to content/news/2018-09-totm/from_peaks_to_genes.png diff --git a/content/blog/2018-09-totm/index.md b/content/news/2018-09-totm/index.md similarity index 98% rename from content/blog/2018-09-totm/index.md rename to content/news/2018-09-totm/index.md index 782cc7f5a8..d073468bec 100644 --- a/content/blog/2018-09-totm/index.md +++ b/content/news/2018-09-totm/index.md @@ -12,7 +12,7 @@ To help highlight our tutorials and the training effort of the community, a memb This month Maria Doyle (GitHub: [@mblue9](https://github.com/mblue9)) has selected the tutorial **["From peaks to genes"](http://galaxyproject.github.io/training-material/topics/introduction/tutorials/galaxy-intro-peaks2genes/tutorial.html)**, from the topic ["Introduction to Galaxy Analyses"](http://galaxyproject.github.io/training-material/topics/introduction/s): -from_peaks_to_genes screenshot +from_peaks_to_genes screenshot **The full version is available on the training website: [https://training.galaxyproject.org/topics/introduction/tutorials/galaxy-intro-peaks2genes/tutorial.html](https://training.galaxyproject.org/topics/introduction/tutorials/galaxy-intro-peaks2genes/tutorial.html)** diff --git a/content/blog/2018-10-cotm-yvan-le-bras/concarneau-pet.jpg b/content/news/2018-10-cotm-yvan-le-bras/concarneau-pet.jpg similarity index 100% rename from content/blog/2018-10-cotm-yvan-le-bras/concarneau-pet.jpg rename to content/news/2018-10-cotm-yvan-le-bras/concarneau-pet.jpg diff --git a/content/blog/2018-10-cotm-yvan-le-bras/concarneau.jpg b/content/news/2018-10-cotm-yvan-le-bras/concarneau.jpg similarity index 100% rename from content/blog/2018-10-cotm-yvan-le-bras/concarneau.jpg rename to content/news/2018-10-cotm-yvan-le-bras/concarneau.jpg diff --git a/content/blog/2018-10-cotm-yvan-le-bras/dolphin.jpg b/content/news/2018-10-cotm-yvan-le-bras/dolphin.jpg similarity index 100% rename from content/blog/2018-10-cotm-yvan-le-bras/dolphin.jpg rename to content/news/2018-10-cotm-yvan-le-bras/dolphin.jpg diff --git a/content/blog/2018-10-cotm-yvan-le-bras/index.md b/content/news/2018-10-cotm-yvan-le-bras/index.md similarity index 100% rename from content/blog/2018-10-cotm-yvan-le-bras/index.md rename to content/news/2018-10-cotm-yvan-le-bras/index.md diff --git a/content/blog/2018-10-cotm-yvan-le-bras/jardin-des-plantes.jpg b/content/news/2018-10-cotm-yvan-le-bras/jardin-des-plantes.jpg similarity index 100% rename from content/blog/2018-10-cotm-yvan-le-bras/jardin-des-plantes.jpg rename to content/news/2018-10-cotm-yvan-le-bras/jardin-des-plantes.jpg diff --git a/content/blog/2018-10-cotm-yvan-le-bras/shark.jpg b/content/news/2018-10-cotm-yvan-le-bras/shark.jpg similarity index 100% rename from content/blog/2018-10-cotm-yvan-le-bras/shark.jpg rename to content/news/2018-10-cotm-yvan-le-bras/shark.jpg diff --git a/content/news/2018-10-galaxy-update/index.md b/content/news/2018-10-galaxy-update/index.md index 2c54714b9c..9d3bc099f4 100644 --- a/content/news/2018-10-galaxy-update/index.md +++ b/content/news/2018-10-galaxy-update/index.md @@ -261,15 +261,15 @@ These and [other Galaxy related events](/events/) are coming up in the next few # New Galactic Blog Posts
-[Galactic Blog](/blog/) +[Galactic Blog](/news/)
-There are three new *[Galactic Blog](/blog/)* entries: +There are three new *[Galactic Blog](/news/)* entries: * [Hybrid training delivers online participatory training to far-reaching venues](https://www.embl-abr.org.au/hybrid-training-delivers-online-participatory-training-to-far-reaching-venues/), by Christina Hall -* [Tutorial of the Month: Maria Doyle selected "From peaks to genes"](/blog/2018-09-totm/), by Bérénice Batut +* [Tutorial of the Month: Maria Doyle selected "From peaks to genes"](/news/2018-09-totm/), by Bérénice Batut * *This is the first of a new monthly series about [GTN Tutorials](https://training.galaxyproject.org/).* -* [Contributor of the Month: Yvan Le Bras](/blog/2018-10-cotm-yvan-le-bras/), By Björn Grüning +* [Contributor of the Month: Yvan Le Bras](/news/2018-10-cotm-yvan-le-bras/), By Björn Grüning ---- # Who's Hiring diff --git a/content/blog/2018-10-totm/20170120_091518.jpg b/content/news/2018-10-totm/20170120_091518.jpg similarity index 100% rename from content/blog/2018-10-totm/20170120_091518.jpg rename to content/news/2018-10-totm/20170120_091518.jpg diff --git a/content/blog/2018-10-totm/galaxy101.png b/content/news/2018-10-totm/galaxy101.png similarity index 100% rename from content/blog/2018-10-totm/galaxy101.png rename to content/news/2018-10-totm/galaxy101.png diff --git a/content/blog/2018-10-totm/galaxy101.svg b/content/news/2018-10-totm/galaxy101.svg similarity index 100% rename from content/blog/2018-10-totm/galaxy101.svg rename to content/news/2018-10-totm/galaxy101.svg diff --git a/content/blog/2018-10-totm/index.md b/content/news/2018-10-totm/index.md similarity index 93% rename from content/blog/2018-10-totm/index.md rename to content/news/2018-10-totm/index.md index 43061d85e0..2c15a2a4a1 100644 --- a/content/blog/2018-10-totm/index.md +++ b/content/news/2018-10-totm/index.md @@ -11,9 +11,9 @@ To help highlight our tutorials and the training effort of the community, a memb ## Galaxy 101 -This month, the [*Galaxy contributor of the Month!*](/blog/2018-10-cotm-yvan-le-bras/), Yvan Le Bras, selects and presents a tutorial: ["Galaxy 101"](http://galaxyproject.github.io/training-material/topics/introduction/tutorials/galaxy-intro-101/tutorial.html), from the topic ["Introduction to Galaxy Analyses"](http://galaxyproject.github.io/training-material/topics/introduction/s): +This month, the [*Galaxy contributor of the Month!*](/news/2018-10-cotm-yvan-le-bras/), Yvan Le Bras, selects and presents a tutorial: ["Galaxy 101"](http://galaxyproject.github.io/training-material/topics/introduction/tutorials/galaxy-intro-101/tutorial.html), from the topic ["Introduction to Galaxy Analyses"](http://galaxyproject.github.io/training-material/topics/introduction/s): -galaxy101 screenshot +galaxy101 screenshot *The full version is available on the training website: [http://training.galaxyproject.org/topics/introduction/tutorials/galaxy-intro-101/tutorial.html](http://galaxyproject.github.io/training-material/topics/introduction/tutorials/galaxy-intro-101/tutorial.html)* @@ -21,11 +21,11 @@ This month, the [*Galaxy contributor of the Month!*](/blog/2018-10-cotm-yvan-le- Yvan, we are looking forward to learn more about your choice! -### We learn about you and Galaxy in the [*Galaxy contributor of the Month!* post](/blog/2018-10-cotm-yvan-le-bras/). Can you do a small recap here? +### We learn about you and Galaxy in the [*Galaxy contributor of the Month!* post](/news/2018-10-cotm-yvan-le-bras/). Can you do a small recap here? Since 2010, the year I discovered Galaxy, I obtained my PhD, begun to focus on Bioinformatics/Biostatistics through NGS and proteomics approaches, animated a western France Galaxy group of users, given dozens of hours of Galaxy training, created the French CeSGO e-Science Center, co-founded the Enancio start-up and finally returned to my first love, Ecology and biodiversity conservation through the birth of Galaxy-E initiative thanks to the national "65 Millions d'observateurs" project dedicated to facilitate and extend participation into citizen science projects and now coordinating the national "Pôle national de données de biodiversité" French Research Infrastructure. A big sentence isn't it ;) And... this is the view from my office: -Galaxy-E window +Galaxy-E window ### Can you tell us a little about yourself and your relationship to training? @@ -35,7 +35,7 @@ Since my PhD, I'm convinced that training is a key element for science to go fas I gave something like 30 Galaxy training sessions, always beginning by this introductory tutorial, and this fundamental question: -Which exon has the highest density of SNPs on human chromosome 22? +Which exon has the highest density of SNPs on human chromosome 22? Writing these lines, I can see Cyril (Monjeaud), with whom I gave almost all the training sessions, face expression as it was always like a game to me to transform this "simple" question into a fundamental research one! Concretly, this is a perfect manner to introduce Galaxy functionnalities, interest, using a "simple" few-steps workflow, dealing with remote datasets, well known data banks (here UCSC), and basic but so important and powerfull pre-processing/filtering tools! For sure kind of tools that a lot of people use on the ~every-day lab life! diff --git a/content/blog/2018-10-totm/question.png b/content/news/2018-10-totm/question.png similarity index 100% rename from content/blog/2018-10-totm/question.png rename to content/news/2018-10-totm/question.png diff --git a/content/blog/2018-11-cotm-saskia-hiltemann/index.md b/content/news/2018-11-cotm-saskia-hiltemann/index.md similarity index 100% rename from content/blog/2018-11-cotm-saskia-hiltemann/index.md rename to content/news/2018-11-cotm-saskia-hiltemann/index.md diff --git a/content/blog/2018-11-cotm-saskia-hiltemann/saskia-hiltemann.png b/content/news/2018-11-cotm-saskia-hiltemann/saskia-hiltemann.png similarity index 100% rename from content/blog/2018-11-cotm-saskia-hiltemann/saskia-hiltemann.png rename to content/news/2018-11-cotm-saskia-hiltemann/saskia-hiltemann.png diff --git a/content/news/2018-11-galaxy-update/index.md b/content/news/2018-11-galaxy-update/index.md index 7a7666177b..38a732cf80 100644 --- a/content/news/2018-11-galaxy-update/index.md +++ b/content/news/2018-11-galaxy-update/index.md @@ -245,9 +245,9 @@ We tag papers that use, mention, implement or extend public Galaxy platforms (se ---- # New Galactic Blog Posts -[Galactic Blog](/blog/) +[Galactic Blog](/news/) -There are two new *[Galactic Blog](/blog/)* entries: +There are two new *[Galactic Blog](/news/)* entries: * **[Contributor of the month: Saskia Hiltemann](https://galaxyproject.org/blog/2018-11-cotm-saskia-hiltemann/)**, by Marten Čech * **[Tutorial of the Month: "Galaxy 101", selected by Yvan Le Bras](https://galaxyproject.org/blog/2018-10-totm)**, by Bérénice Batut diff --git a/content/blog/2018-11-gtg/index.md b/content/news/2018-11-gtg/index.md similarity index 100% rename from content/blog/2018-11-gtg/index.md rename to content/news/2018-11-gtg/index.md diff --git a/content/blog/2018-11-totm/index.md b/content/news/2018-11-totm/index.md similarity index 95% rename from content/blog/2018-11-totm/index.md rename to content/news/2018-11-totm/index.md index a9c87bc4f6..15db9c85b4 100644 --- a/content/blog/2018-11-totm/index.md +++ b/content/news/2018-11-totm/index.md @@ -14,7 +14,7 @@ To help highlight our tutorials and the training effort of the community, every This month, the [*Galaxy contributor of the Month!*](../2018-11-cotm-saskia-hiltemann), Saskia Hiltemann, selects and presents the tutorial: ["Reference-based RNA-Seq data analysis"](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html), from the topic ["Transcriptomics"](http://galaxyproject.github.io/training-material/topics/transcriptomics): -Reference based RNA-seq overview +Reference based RNA-seq overview *The full version is available on the training website: [http://training.galaxyproject.org/topics/transcriptomics/tutorials/ref-based/tutorial.html](https://galaxyproject.github.io/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html)* @@ -34,8 +34,8 @@ I have always enjoyed teaching, having worked as a tutor all throughout universi I really like this tutorial because it is a nice end-to-end analysis, starting really from the raw data coming off the sequencer, and doing some QC, mapping, analysis and visualisation. -Visualization -ref-based RNA-seq pipeline +Visualization +ref-based RNA-seq pipeline I think it is also one of tutorials most often taught during workshops, so all the different instructors around the world who teach this keep the materials up-to-date together, resulting in very high-quality materials, really cutting down on the time needed to prepare before each time I teach this. diff --git a/content/blog/2018-11-totm/pipeline.png b/content/news/2018-11-totm/pipeline.png similarity index 100% rename from content/blog/2018-11-totm/pipeline.png rename to content/news/2018-11-totm/pipeline.png diff --git a/content/blog/2018-11-totm/ref-based-rna-seq.png b/content/news/2018-11-totm/ref-based-rna-seq.png similarity index 100% rename from content/blog/2018-11-totm/ref-based-rna-seq.png rename to content/news/2018-11-totm/ref-based-rna-seq.png diff --git a/content/blog/2018-11-totm/ref-based-rna-seq.svg b/content/news/2018-11-totm/ref-based-rna-seq.svg similarity index 100% rename from content/blog/2018-11-totm/ref-based-rna-seq.svg rename to content/news/2018-11-totm/ref-based-rna-seq.svg diff --git a/content/blog/2018-11-totm/visualization.png b/content/news/2018-11-totm/visualization.png similarity index 100% rename from content/blog/2018-11-totm/visualization.png rename to content/news/2018-11-totm/visualization.png diff --git a/content/blog/2018-11-totm/visualization.svg b/content/news/2018-11-totm/visualization.svg similarity index 100% rename from content/blog/2018-11-totm/visualization.svg rename to content/news/2018-11-totm/visualization.svg diff --git a/content/blog/2018-12-cotm-simon-gladman/index.md b/content/news/2018-12-cotm-simon-gladman/index.md similarity index 100% rename from content/blog/2018-12-cotm-simon-gladman/index.md rename to content/news/2018-12-cotm-simon-gladman/index.md diff --git a/content/blog/2018-12-cotm-simon-gladman/simon_small.jpg b/content/news/2018-12-cotm-simon-gladman/simon_small.jpg similarity index 100% rename from content/blog/2018-12-cotm-simon-gladman/simon_small.jpg rename to content/news/2018-12-cotm-simon-gladman/simon_small.jpg diff --git a/content/news/2018-12-galaxy-update/index.md b/content/news/2018-12-galaxy-update/index.md index 6aaec8dfc7..0a51ab3fc7 100644 --- a/content/news/2018-12-galaxy-update/index.md +++ b/content/news/2018-12-galaxy-update/index.md @@ -261,12 +261,12 @@ We tag papers that use, mention, implement or extend public Galaxy platforms (se # New Galactic Blog Posts -[Galactic Blog](/blog/) +[Galactic Blog](/news/) -There are two new *[Galactic Blog](/blog/)* entries: +There are two new *[Galactic Blog](/news/)* entries: * **[Galaxy Tool Generator (GTG)](https://galaxy-tool-generator.readthedocs.io/en/latest/)**, by Ming Chen -* **[Tutorial of the Month: "Reference-based RNA-Seq data analysis", selected by Saskia Hiltemann](/blog/2018-11-totm/)**, by Bérénice Batut +* **[Tutorial of the Month: "Reference-based RNA-Seq data analysis", selected by Saskia Hiltemann](/news/2018-11-totm/)**, by Bérénice Batut ---- # Who's Hiring diff --git a/content/blog/2018-12-quantp/index.md b/content/news/2018-12-quantp/index.md similarity index 100% rename from content/blog/2018-12-quantp/index.md rename to content/news/2018-12-quantp/index.md diff --git a/content/news/2019-01-galaxy-update/index.md b/content/news/2019-01-galaxy-update/index.md index 3da58eae38..9d17eddaee 100644 --- a/content/news/2019-01-galaxy-update/index.md +++ b/content/news/2019-01-galaxy-update/index.md @@ -213,10 +213,10 @@ These and [other Galaxy related events](/events/) are coming up in the next few *[Galactic](https://www.zotero.org/groups/1732893/galaxy/tags/%2BGalactic)* and *[Stellar](https://www.zotero.org/groups/1732893/galaxy/tags/%2BStellar)* publications from December: -* **[Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud](https://doi.org/10.1101/488643)**, [Pablo Moreno](/blog/2018-08-cotm-pablo-moreno/), Luca Pireddu, Pierrick Roger, Nuwan Goonasekera, [Enis Afgan](/people/enis-afgan/), Marius van den Beek, Sijin He, Anders Larsson, Christoph Ruttkies, Daniel Schober, David Johnson, Philippe Rocca-Serra, Ralf J.M. Weber, [Bjoern Gruening](/people/bjoern-gruening/), Reza Salek, Namrata Kale, Yasset Perez-Riverol, Irene Papatheodorou, Ola Spjuth, Steffen Neumann, *bioRxiv* 488643; +* **[Galaxy-Kubernetes integration: scaling bioinformatics workflows in the cloud](https://doi.org/10.1101/488643)**, [Pablo Moreno](/news/2018-08-cotm-pablo-moreno/), Luca Pireddu, Pierrick Roger, Nuwan Goonasekera, [Enis Afgan](/people/enis-afgan/), Marius van den Beek, Sijin He, Anders Larsson, Christoph Ruttkies, Daniel Schober, David Johnson, Philippe Rocca-Serra, Ralf J.M. Weber, [Bjoern Gruening](/people/bjoern-gruening/), Reza Salek, Namrata Kale, Yasset Perez-Riverol, Irene Papatheodorou, Ola Spjuth, Steffen Neumann, *bioRxiv* 488643; doi: 10.1101/488643 * **[PhenoMeNal: Processing and analysis of Metabolomics data in the Cloud](https://doi.org/10.1093/gigascience/giy149)**, -Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy M D Ebbels, Carles Foguet, Robert Glen, Alejandra Gonzalez-Beltran, Ulrich L Günther, Evangelos Handakas, Thomas Hankemeier, Kenneth Haug, Stephanie Herman, Petr Holub, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Ibrahim Karaman, Bita Khalili, Payam Emami Khonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Christian Ludwig, [Pablo Moreno](/blog/2018-08-cotm-pablo-moreno/), Steffen Neumann, Jon Ander Novella, Claire O'Donovan, Jake T M Pearce, Alina Peluso, Marco Enrico Piras, Luca Pireddu, Michelle A C Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M Salek, Susanna-Assunta Sansone, Vitaly Selivanov, Ola Spjuth, Daniel Schober, Etienne A Thévenot, Mattia Tomasoni, Merlijn van Rijswijk, Michael van Vliet, Mark R Viant, Ralf J M Weber, Gianluigi Zanetti, Christoph Steinbeck, *GigaScience*, giy149, doi: 10.1093/gigascience/giy149 +Kristian Peters, James Bradbury, Sven Bergmann, Marco Capuccini, Marta Cascante, Pedro de Atauri, Timothy M D Ebbels, Carles Foguet, Robert Glen, Alejandra Gonzalez-Beltran, Ulrich L Günther, Evangelos Handakas, Thomas Hankemeier, Kenneth Haug, Stephanie Herman, Petr Holub, Massimiliano Izzo, Daniel Jacob, David Johnson, Fabien Jourdan, Namrata Kale, Ibrahim Karaman, Bita Khalili, Payam Emami Khonsari, Kim Kultima, Samuel Lampa, Anders Larsson, Christian Ludwig, [Pablo Moreno](/news/2018-08-cotm-pablo-moreno/), Steffen Neumann, Jon Ander Novella, Claire O'Donovan, Jake T M Pearce, Alina Peluso, Marco Enrico Piras, Luca Pireddu, Michelle A C Reed, Philippe Rocca-Serra, Pierrick Roger, Antonio Rosato, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M Salek, Susanna-Assunta Sansone, Vitaly Selivanov, Ola Spjuth, Daniel Schober, Etienne A Thévenot, Mattia Tomasoni, Merlijn van Rijswijk, Michael van Vliet, Mark R Viant, Ralf J M Weber, Gianluigi Zanetti, Christoph Steinbeck, *GigaScience*, giy149, doi: 10.1093/gigascience/giy149 * **[Cloud Bursting Galaxy: Federated Identity and Access Management](https://doi.org/10.1101/506238)**, [Vahid Jalili](/people/vahid-jalili/), [Enis Afgan](/people/enis-afgan/), [James Taylor](/people/james-taylor/), [Jeremy Goecks](/people/jeremy-goecks/), *bioRxiv* 506238, doi: 10.1101/506238 * **[SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data](https://doi.org/10.1093/bioinformatics/bty947 )**, Jamie Soul, Tim E Hardingham, Ray P Boot-Handford, Jean-Marc Schwartz, *Bioinformatics*, bty947, doi: 10.1093/bioinformatics/bty947 @@ -287,11 +287,11 @@ We tag papers that use, mention, implement or extend public Galaxy platforms (se # New Galactic Blog Posts -[Galactic Blog](/blog/) +[Galactic Blog](/news/) -There is one new *[Galactic Blog](/blog/)* entry: +There is one new *[Galactic Blog](/news/)* entry: -* **[Contributor of the Month: Simon Gladman](/blog/2018-12-cotm-simon-gladman/):** +* **[Contributor of the Month: Simon Gladman](/news/2018-12-cotm-simon-gladman/):** * 'firefighter, cheesemaker, pillar of the [Galaxy Australia](https://usegalaxy.org.au/), and an overall jolly good fellow' * by [Martin Čech](/people/marten/) diff --git a/content/blog/2019-01-totm/annotation_with_prokka.png b/content/news/2019-01-totm/annotation_with_prokka.png similarity index 100% rename from content/blog/2019-01-totm/annotation_with_prokka.png rename to content/news/2019-01-totm/annotation_with_prokka.png diff --git a/content/blog/2019-01-totm/annotation_with_prokka.svg b/content/news/2019-01-totm/annotation_with_prokka.svg similarity index 100% rename from content/blog/2019-01-totm/annotation_with_prokka.svg rename to content/news/2019-01-totm/annotation_with_prokka.svg diff --git a/content/blog/2019-01-totm/index.md b/content/news/2019-01-totm/index.md similarity index 98% rename from content/blog/2019-01-totm/index.md rename to content/news/2019-01-totm/index.md index 12984f965d..8b7e43a1ce 100644 --- a/content/blog/2019-01-totm/index.md +++ b/content/news/2019-01-totm/index.md @@ -12,7 +12,7 @@ To help highlight our tutorials and the training effort of the community, every This month, the [*Galaxy contributor of the Month!*](../2018-12-cotm-simon-gladman), Simon Gladman, selects and presents the tutorial: ["Genome annotation with Prokka"](https://galaxyproject.github.io/training-material/topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html), from the topic ["Genome Annotation"](https://galaxyproject.github.io/training-material/topics/genome-annotation/tutorials/annotation-with-prokka/): -Genome annotation with Prokka +Genome annotation with Prokka *The full version is available on the training website: [http://training.galaxyproject.org/topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html](http://training.galaxyproject.org/topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html)* diff --git a/content/blog/2019-02-cvmfs/Nate_face.jpeg b/content/news/2019-02-cvmfs/Nate_face.jpeg similarity index 100% rename from content/blog/2019-02-cvmfs/Nate_face.jpeg rename to content/news/2019-02-cvmfs/Nate_face.jpeg diff --git a/content/blog/2019-02-cvmfs/cvmfs-server-distribution.png b/content/news/2019-02-cvmfs/cvmfs-server-distribution.png similarity index 100% rename from content/blog/2019-02-cvmfs/cvmfs-server-distribution.png rename to content/news/2019-02-cvmfs/cvmfs-server-distribution.png diff --git a/content/blog/2019-02-cvmfs/cvmfs-tiered-architecture-example.png b/content/news/2019-02-cvmfs/cvmfs-tiered-architecture-example.png similarity index 100% rename from content/blog/2019-02-cvmfs/cvmfs-tiered-architecture-example.png rename to content/news/2019-02-cvmfs/cvmfs-tiered-architecture-example.png diff --git a/content/blog/2019-02-cvmfs/index.md b/content/news/2019-02-cvmfs/index.md similarity index 98% rename from content/blog/2019-02-cvmfs/index.md rename to content/news/2019-02-cvmfs/index.md index fc2950771f..1839efce24 100644 --- a/content/blog/2019-02-cvmfs/index.md +++ b/content/news/2019-02-cvmfs/index.md @@ -22,7 +22,7 @@ CVMFS uses a tiered model to distribute data in a scalable and fault tolerant ma | | |--------| -|![cvmfs-tiered-architecture-example](/blog/2019-02-cvmfs/cvmfs-tiered-architecture-example.png)| +|![cvmfs-tiered-architecture-example](/news/2019-02-cvmfs/cvmfs-tiered-architecture-example.png)| |**CVMFS tiered architecture example** source: [https://cvmfs.readthedocs.io/en/stable/cpt-replica.html](https://cvmfs.readthedocs.io/en/stable/cpt-replica.html).| _How is CVMFS being used in Galaxy?_ @@ -41,7 +41,7 @@ As news of this success got out, others wanted to use the same data. It’s now | | |--------| -|![cvmfs-server-distribution](/blog/2019-02-cvmfs/cvmfs-server-distribution.png)| +|![cvmfs-server-distribution](/news/2019-02-cvmfs/cvmfs-server-distribution.png)| |**Galaxy Project CVMFS infrastructure, February 2019**.| _How can current system admins of Galaxy implement CVMFS reference management for their Galaxy instance?_ diff --git a/content/news/2019-02-galaxy-update/index.md b/content/news/2019-02-galaxy-update/index.md index eed29d8ddb..56592e2698 100644 --- a/content/news/2019-02-galaxy-update/index.md +++ b/content/news/2019-02-galaxy-update/index.md @@ -274,12 +274,12 @@ We tag papers that use, mention, implement or extend public Galaxy platforms (se # New Galactic Blog Posts
-[Genome annotation with Prokka](/blog/2019-01-totm/) +[Genome annotation with Prokka](/news/2019-01-totm/)
-There are two new *[Galactic Blog](/blog/)* entries: +There are two new *[Galactic Blog](/news/)* entries: -* **[Tutorial of the Month: Genome annotation with Prokka, selected by Simon Gladman](/blog/2019-01-totm/):** +* **[Tutorial of the Month: Genome annotation with Prokka, selected by Simon Gladman](/news/2019-01-totm/):** * read about using Prokka for annotation of draft genome sequences * by Bérénice Batut * **[Hey Galaxy People! Want easy proteo-transcriptomics!??!](https://proteomicsnews.blogspot.com/2018/12/hey-galaxy-people-want-easy-proteo.html)** diff --git a/content/news/2019-03-galaxy-update/index.md b/content/news/2019-03-galaxy-update/index.md index d0409964c2..7a5e455678 100644 --- a/content/news/2019-03-galaxy-update/index.md +++ b/content/news/2019-03-galaxy-update/index.md @@ -64,7 +64,7 @@ We’re pleased to be running a call for papers for GCC2019 and **would like to Kubernetes -After a two year hiatus, the [online GalaxyAdmins meetups](/community/galaxy-admins/meetups/) will return on [March 21](/community/galaxy-admins/meetups/2019-03-21/), with a community discussion, and a presentation from [Pablo Moreno](/blog/2018-08-cotm-pablo-moreno/) on *Running Galaxy on Kubernetes*, online at 15:00 GMT (see [your local time](https://www.timeanddate.com/worldclock/fixedtime.html?msg=March+2019+GalaxyAdmins+Meetup&iso=20190321T15&p1=1234&ah=1)). See the [meetup page for links](/community/galaxy-admins/meetups/)). +After a two year hiatus, the [online GalaxyAdmins meetups](/community/galaxy-admins/meetups/) will return on [March 21](/community/galaxy-admins/meetups/2019-03-21/), with a community discussion, and a presentation from [Pablo Moreno](/news/2018-08-cotm-pablo-moreno/) on *Running Galaxy on Kubernetes*, online at 15:00 GMT (see [your local time](https://www.timeanddate.com/worldclock/fixedtime.html?msg=March+2019+GalaxyAdmins+Meetup&iso=20190321T15&p1=1234&ah=1)). See the [meetup page for links](/community/galaxy-admins/meetups/)). [GalaxyAdmins](/community/galaxy-admins/) is a discussion group for Galaxy community members who are responsible for Galaxy installations. Our online meetups are around an hour long and feature a presentation followed by an open discussion. It's a great place to catch up on what your fellow admins are thinking about. @@ -265,11 +265,11 @@ We tag papers that use, mention, implement or extend public Galaxy platforms (se ---- -[Galactic Blog](/blog/) +[Galactic Blog](/news/) # New Galactic Blog Post -This month we have a *[Galactic Blog](/blog/)* post where [Nate Coraor was interviewed](https://galaxyproject.org/blog/2019-02-cvmfs/) about what CVMFS actually is and what it does for Galaxy. +This month we have a *[Galactic Blog](/news/)* post where [Nate Coraor was interviewed](https://galaxyproject.org/blog/2019-02-cvmfs/) about what CVMFS actually is and what it does for Galaxy. ---- diff --git a/content/news/2019-04-galaxy-update/index.md b/content/news/2019-04-galaxy-update/index.md index 00c437a095..5447a4f64b 100644 --- a/content/news/2019-04-galaxy-update/index.md +++ b/content/news/2019-04-galaxy-update/index.md @@ -222,11 +222,11 @@ We tag papers that use, mention, implement or extend public Galaxy platforms (se ---- -[Galactic Blog](/blog/) +[Galactic Blog](/news/) # New Galactic Blog Post -This month we have a *[Galactic Blog](/blog/)* post where [Björn Grüning](https://github.com/bgruening) gives a [sneak peak at GCC2019](/blog/2019-04-gcc2019/). +This month we have a *[Galactic Blog](/news/)* post where [Björn Grüning](https://github.com/bgruening) gives a [sneak peak at GCC2019](/news/2019-04-gcc2019/). ---- diff --git a/content/blog/2019-04-gcc2019/bjorn-gcc2017.jpg b/content/news/2019-04-gcc2019/bjorn-gcc2017.jpg similarity index 100% rename from content/blog/2019-04-gcc2019/bjorn-gcc2017.jpg rename to content/news/2019-04-gcc2019/bjorn-gcc2017.jpg diff --git a/content/blog/2019-04-gcc2019/index.md b/content/news/2019-04-gcc2019/index.md similarity index 100% rename from content/blog/2019-04-gcc2019/index.md rename to content/news/2019-04-gcc2019/index.md diff --git a/content/blog/2019-04-gcp/cl1.png b/content/news/2019-04-gcp/cl1.png similarity index 100% rename from content/blog/2019-04-gcp/cl1.png rename to content/news/2019-04-gcp/cl1.png diff --git a/content/blog/2019-04-gcp/cl2.png b/content/news/2019-04-gcp/cl2.png similarity index 100% rename from content/blog/2019-04-gcp/cl2.png rename to content/news/2019-04-gcp/cl2.png diff --git a/content/blog/2019-04-gcp/cl3.png b/content/news/2019-04-gcp/cl3.png similarity index 100% rename from content/blog/2019-04-gcp/cl3.png rename to content/news/2019-04-gcp/cl3.png diff --git a/content/blog/2019-04-gcp/cl4.png b/content/news/2019-04-gcp/cl4.png similarity index 100% rename from content/blog/2019-04-gcp/cl4.png rename to content/news/2019-04-gcp/cl4.png diff --git a/content/blog/2019-04-gcp/cl5.png b/content/news/2019-04-gcp/cl5.png similarity index 100% rename from content/blog/2019-04-gcp/cl5.png rename to content/news/2019-04-gcp/cl5.png diff --git a/content/blog/2019-04-gcp/cl6.png b/content/news/2019-04-gcp/cl6.png similarity index 100% rename from content/blog/2019-04-gcp/cl6.png rename to content/news/2019-04-gcp/cl6.png diff --git a/content/blog/2019-04-gcp/ggcp.png b/content/news/2019-04-gcp/ggcp.png similarity index 100% rename from content/blog/2019-04-gcp/ggcp.png rename to content/news/2019-04-gcp/ggcp.png diff --git a/content/blog/2019-04-gcp/index.md b/content/news/2019-04-gcp/index.md similarity index 93% rename from content/blog/2019-04-gcp/index.md rename to content/news/2019-04-gcp/index.md index 215e107c81..f12411603f 100644 --- a/content/blog/2019-04-gcp/index.md +++ b/content/news/2019-04-gcp/index.md @@ -82,17 +82,17 @@ given GCS bucket. For instance, in the following figure we show uploading a new dataset to Galaxy. - Galaxy data upload + Galaxy data upload - Galaxy data + Galaxy data The uploaded dataset is persisted on the given GCS bucket, as shown in the following figure.
- Galaxy data + Galaxy data
@@ -108,7 +108,7 @@ The CloudMan 2.0 appliance is currently a placeholder for launching the containerized version of Galaxy that was described above.
- CloudLaunch landing + CloudLaunch landing
Follow the launch wizard to create your new instance. If you do not already have @@ -116,10 +116,10 @@ the required Google cloud credentials, check out the documentation here: https://www.galaxyproject.org/admin/objectstore/gce/#create-a-service-account. - CloudLaunch wizard 1 + CloudLaunch wizard 1 - CloudLaunch wizard 2 + CloudLaunch wizard 2 The launch process will take close to 20 minutes (we’re working on it!) and once @@ -131,10 +131,10 @@ observe the status of the machine and, after a few more minutes, access Galaxy to use it for some of the task suggested above. - CloudMan status + CloudMan status - Galaxy CloudMan + Galaxy CloudMan As a preview of the CloudMan 2.0 features, note the ability to visually update @@ -143,7 +143,7 @@ one idea here that translates to the ability to install additional tools in Galaxy.
- CloudMan config + CloudMan config
To shut down your instance, head back to CloudLaunch. Under My Appliances page, diff --git a/content/blog/2019-04-gcp/os1.png b/content/news/2019-04-gcp/os1.png similarity index 100% rename from content/blog/2019-04-gcp/os1.png rename to content/news/2019-04-gcp/os1.png diff --git a/content/blog/2019-04-gcp/os2.png b/content/news/2019-04-gcp/os2.png similarity index 100% rename from content/blog/2019-04-gcp/os2.png rename to content/news/2019-04-gcp/os2.png diff --git a/content/blog/2019-04-gcp/os3.png b/content/news/2019-04-gcp/os3.png similarity index 100% rename from content/blog/2019-04-gcp/os3.png rename to content/news/2019-04-gcp/os3.png diff --git a/content/news/2019-05-galaxy-update/index.md b/content/news/2019-05-galaxy-update/index.md index c2ae3d4ec7..c5ecc29987 100644 --- a/content/news/2019-05-galaxy-update/index.md +++ b/content/news/2019-05-galaxy-update/index.md @@ -302,11 +302,11 @@ We tag papers that use, mention, implement or extend public Galaxy platforms (se | 2 | [>deepTools](https://www.zotero.org/groups/1732893/galaxy/tags/>deepTools) | | 2 | [>Pasteur](https://www.zotero.org/groups/1732893/galaxy/tags/>Pasteur) | | 2 | [>SymD](https://www.zotero.org/groups/1732893/galaxy/tags/>SymD) | | | | | ---- -[ggcp](/blog/) +[ggcp](/news/) # New Galactic Blog Post -This month we have a *[Galactic Blog](/blog/)* post where [Enis Afgan](https://github.com/afgane) and [Vahid Jalili](https://github.com/VJalili) describe recent efforts to [Build up support for the Google Cloud Platform in Galaxy](/blog/2019-04-gcp/). +This month we have a *[Galactic Blog](/news/)* post where [Enis Afgan](https://github.com/afgane) and [Vahid Jalili](https://github.com/VJalili) describe recent efforts to [Build up support for the Google Cloud Platform in Galaxy](/news/2019-04-gcp/). ---- diff --git a/content/blog/2019-05-gcr/cloudlaunch.png b/content/news/2019-05-gcr/cloudlaunch.png similarity index 100% rename from content/blog/2019-05-gcr/cloudlaunch.png rename to content/news/2019-05-gcr/cloudlaunch.png diff --git a/content/blog/2019-05-gcr/gcr.png b/content/news/2019-05-gcr/gcr.png similarity index 100% rename from content/blog/2019-05-gcr/gcr.png rename to content/news/2019-05-gcr/gcr.png diff --git a/content/blog/2019-05-gcr/index.md b/content/news/2019-05-gcr/index.md similarity index 98% rename from content/blog/2019-05-gcr/index.md rename to content/news/2019-05-gcr/index.md index fd832cf48a..41c2a6637c 100644 --- a/content/blog/2019-05-gcr/index.md +++ b/content/news/2019-05-gcr/index.md @@ -110,7 +110,7 @@ In the following screenshots, we're using the Google Cloud Platform to add a machine. Note that you can also mix which providers you use for your workers.
- Running instance
@@ -125,7 +125,7 @@ instance running on GCP where Pulsar automatically installs the necessary tools via Conda and runs the job via an embedded Slurm job manager.
- Launch page 1 + Launch page 1
# Caveats, known issues, and future directions diff --git a/content/blog/2019-05-gcr/job-run.png b/content/news/2019-05-gcr/job-run.png similarity index 100% rename from content/blog/2019-05-gcr/job-run.png rename to content/news/2019-05-gcr/job-run.png diff --git a/content/news/2019-06-galaxy-update/index.md b/content/news/2019-06-galaxy-update/index.md index 6412d8652e..937dad8d09 100644 --- a/content/news/2019-06-galaxy-update/index.md +++ b/content/news/2019-06-galaxy-update/index.md @@ -249,13 +249,13 @@ We tag papers that use, mention, implement or extend public Galaxy platforms (se ---- -[Galaxy Cloud Bursting](/blog/) +[Galaxy Cloud Bursting](/news/) # New Galactic Blog Post: Enabling Cloud Bursting for Galaxy -For the second month in a row we have a new *[Galactic Blog](/blog/)* post from [Enis Afgan](https://github.com/afgane) and [Vahid Jalili](https://github.com/VJalili): +For the second month in a row we have a new *[Galactic Blog](/news/)* post from [Enis Afgan](https://github.com/afgane) and [Vahid Jalili](https://github.com/VJalili): -* [Enabling cloud bursting for Galaxy: Expand your compute horizons](/blog/2019-05-gcr/) +* [Enabling cloud bursting for Galaxy: Expand your compute horizons](/news/2019-05-gcr/) ---- diff --git a/content/blog/2019-07-carpentries-genomics/index.md b/content/news/2019-07-carpentries-genomics/index.md similarity index 100% rename from content/blog/2019-07-carpentries-genomics/index.md rename to content/news/2019-07-carpentries-genomics/index.md diff --git a/content/blog/2019-07-galaxy-twitter/galaxy-on-twitter.png b/content/news/2019-07-galaxy-twitter/galaxy-on-twitter.png similarity index 100% rename from content/blog/2019-07-galaxy-twitter/galaxy-on-twitter.png rename to content/news/2019-07-galaxy-twitter/galaxy-on-twitter.png diff --git a/content/blog/2019-07-galaxy-twitter/index.md b/content/news/2019-07-galaxy-twitter/index.md similarity index 100% rename from content/blog/2019-07-galaxy-twitter/index.md rename to content/news/2019-07-galaxy-twitter/index.md diff --git a/content/blog/2019-07-looking-for-galaxy/19-feet-of-family-sedan.jpg b/content/news/2019-07-looking-for-galaxy/19-feet-of-family-sedan.jpg similarity index 100% rename from content/blog/2019-07-looking-for-galaxy/19-feet-of-family-sedan.jpg rename to content/news/2019-07-looking-for-galaxy/19-feet-of-family-sedan.jpg diff --git a/content/blog/2019-07-looking-for-galaxy/galaxy-search.png b/content/news/2019-07-looking-for-galaxy/galaxy-search.png similarity index 100% rename from content/blog/2019-07-looking-for-galaxy/galaxy-search.png rename to content/news/2019-07-looking-for-galaxy/galaxy-search.png diff --git a/content/blog/2019-07-looking-for-galaxy/index.md b/content/news/2019-07-looking-for-galaxy/index.md similarity index 100% rename from content/blog/2019-07-looking-for-galaxy/index.md rename to content/news/2019-07-looking-for-galaxy/index.md diff --git a/content/news/2019-08-galaxy-update/index.md b/content/news/2019-08-galaxy-update/index.md index a30b07864f..08525654ec 100644 --- a/content/news/2019-08-galaxy-update/index.md +++ b/content/news/2019-08-galaxy-update/index.md @@ -271,8 +271,8 @@ Caleb W. Easterly, Ray Sajulga, Subina Mehta, James Johnson, Praveen Kumar, Shan
-Galaxy on Twitter -
[Galaxy on Twitter: An Update](/blog/2019-07-galaxy-twitter/)
+Galaxy on Twitter +
[Galaxy on Twitter: An Update](/news/2019-07-galaxy-twitter/)
An update from the team behind [@galaxyproject](https://twitter.com/galaxyproject) tweets, motivated by the new [@gxytraining](https://twitter.com/gxytraining) account. @@ -280,8 +280,8 @@ There a lot more going on than @galaxyproject and [#UseGalaxy](https://twitter.c
-Where do cars go after they die? -
[Looking for Galaxy (info), in all the right places](/blog/2019-07-looking-for-galaxy/)
+Where do cars go after they die? +
[Looking for Galaxy (info), in all the right places](/news/2019-07-looking-for-galaxy/)
How to find Galaxy info on the web, and find *only* Galaxy info on the web. No more phones, astronomy, soccer, cars, chocolate, or Ansible (OK, maybe Ansible). diff --git a/content/blog/2019-11-galaxyp-tutorials/index.md b/content/news/2019-11-galaxyp-tutorials/index.md similarity index 100% rename from content/blog/2019-11-galaxyp-tutorials/index.md rename to content/news/2019-11-galaxyp-tutorials/index.md diff --git a/content/blog/2019-11-galaxyp-tutorials/news-in-proteomics-research-banner.png b/content/news/2019-11-galaxyp-tutorials/news-in-proteomics-research-banner.png similarity index 100% rename from content/blog/2019-11-galaxyp-tutorials/news-in-proteomics-research-banner.png rename to content/news/2019-11-galaxyp-tutorials/news-in-proteomics-research-banner.png diff --git a/content/news/2019-12-galaxy-update/index.md b/content/news/2019-12-galaxy-update/index.md index 1c0ee0b9ab..c09a642215 100644 --- a/content/news/2019-12-galaxy-update/index.md +++ b/content/news/2019-12-galaxy-update/index.md @@ -163,7 +163,7 @@ Publications are tagged with how they use, extend or reference Galaxy. The past # Galactic Blog Activity -[Two new entries](/blog/) in the past month, both related to UseGalaxy.eu.. +[Two new entries](/news/) in the past month, both related to UseGalaxy.eu..
@@ -187,7 +187,7 @@ By Ivan Kuzmin. gProfiler is a toolset for functional enrichment analysis and c By Ben Orsburn. The arguments are building up for why you need this. -Galaxy P +Galaxy P
diff --git a/content/blog/2019-12-pgpuk/index.md b/content/news/2019-12-pgpuk/index.md similarity index 100% rename from content/blog/2019-12-pgpuk/index.md rename to content/news/2019-12-pgpuk/index.md diff --git a/content/blog/2020-01-galaxy-ecology-citizen-science/MMOS_developer_portal.PNG b/content/news/2020-01-galaxy-ecology-citizen-science/MMOS_developer_portal.PNG similarity index 100% rename from content/blog/2020-01-galaxy-ecology-citizen-science/MMOS_developer_portal.PNG rename to content/news/2020-01-galaxy-ecology-citizen-science/MMOS_developer_portal.PNG diff --git a/content/blog/2020-01-galaxy-ecology-citizen-science/activityWorkflow.png b/content/news/2020-01-galaxy-ecology-citizen-science/activityWorkflow.png similarity index 100% rename from content/blog/2020-01-galaxy-ecology-citizen-science/activityWorkflow.png rename to content/news/2020-01-galaxy-ecology-citizen-science/activityWorkflow.png diff --git a/content/blog/2020-01-galaxy-ecology-citizen-science/galaxybricks.PNG b/content/news/2020-01-galaxy-ecology-citizen-science/galaxybricks.PNG similarity index 100% rename from content/blog/2020-01-galaxy-ecology-citizen-science/galaxybricks.PNG rename to content/news/2020-01-galaxy-ecology-citizen-science/galaxybricks.PNG diff --git a/content/blog/2020-01-galaxy-ecology-citizen-science/index.md b/content/news/2020-01-galaxy-ecology-citizen-science/index.md similarity index 100% rename from content/blog/2020-01-galaxy-ecology-citizen-science/index.md rename to content/news/2020-01-galaxy-ecology-citizen-science/index.md diff --git a/content/blog/2020-01-galaxy-ecology-citizen-science/scratch.PNG b/content/news/2020-01-galaxy-ecology-citizen-science/scratch.PNG similarity index 100% rename from content/blog/2020-01-galaxy-ecology-citizen-science/scratch.PNG rename to content/news/2020-01-galaxy-ecology-citizen-science/scratch.PNG diff --git a/content/blog/2020-01-galaxy-ecology-citizen-science/sexing-marmalade-slice.png b/content/news/2020-01-galaxy-ecology-citizen-science/sexing-marmalade-slice.png similarity index 100% rename from content/blog/2020-01-galaxy-ecology-citizen-science/sexing-marmalade-slice.png rename to content/news/2020-01-galaxy-ecology-citizen-science/sexing-marmalade-slice.png diff --git a/content/blog/2020-01-galaxy-ecology-citizen-science/spipoll_protocol.PNG b/content/news/2020-01-galaxy-ecology-citizen-science/spipoll_protocol.PNG similarity index 100% rename from content/blog/2020-01-galaxy-ecology-citizen-science/spipoll_protocol.PNG rename to content/news/2020-01-galaxy-ecology-citizen-science/spipoll_protocol.PNG diff --git a/content/blog/2020-01-galaxy-ecology-citizen-science/webhook1.PNG b/content/news/2020-01-galaxy-ecology-citizen-science/webhook1.PNG similarity index 100% rename from content/blog/2020-01-galaxy-ecology-citizen-science/webhook1.PNG rename to content/news/2020-01-galaxy-ecology-citizen-science/webhook1.PNG diff --git a/content/news/2020-01-galaxy-update/index.md b/content/news/2020-01-galaxy-update/index.md index 9055ca992e..955b5fbf87 100644 --- a/content/news/2020-01-galaxy-update/index.md +++ b/content/news/2020-01-galaxy-update/index.md @@ -237,7 +237,7 @@ Includes [genetic, methylome, and transcriptome data](https://usegalaxy.eu/libra
-[Crowdsourcing citizen science data on usegalaxy.eu](/blog/2020-01-galaxy-ecology-citizen-science/) +[Crowdsourcing citizen science data on usegalaxy.eu](/news/2020-01-galaxy-ecology-citizen-science/)
@@ -245,7 +245,7 @@ By Yvan Le Bras, Simon Bénateau. Galaxy for Ecology, mixing Ecology research, Citizen Science and Massively Multi Online Science. -![Crowdsourcing citizen science data on usegalaxy.eu](/blog/2020-01-galaxy-ecology-citizen-science/sexing-marmalade-slice.png) +![Crowdsourcing citizen science data on usegalaxy.eu](/news/2020-01-galaxy-ecology-citizen-science/sexing-marmalade-slice.png)
diff --git a/content/blog/2020-02-gvl5-beta/cluster-metrics.png b/content/news/2020-02-gvl5-beta/cluster-metrics.png similarity index 100% rename from content/blog/2020-02-gvl5-beta/cluster-metrics.png rename to content/news/2020-02-gvl5-beta/cluster-metrics.png diff --git a/content/blog/2020-02-gvl5-beta/cm-galaxy-configs.png b/content/news/2020-02-gvl5-beta/cm-galaxy-configs.png similarity index 100% rename from content/blog/2020-02-gvl5-beta/cm-galaxy-configs.png rename to content/news/2020-02-gvl5-beta/cm-galaxy-configs.png diff --git a/content/blog/2020-02-gvl5-beta/five-clouds.png b/content/news/2020-02-gvl5-beta/five-clouds.png similarity index 100% rename from content/blog/2020-02-gvl5-beta/five-clouds.png rename to content/news/2020-02-gvl5-beta/five-clouds.png diff --git a/content/blog/2020-02-gvl5-beta/gvl-login.png b/content/news/2020-02-gvl5-beta/gvl-login.png similarity index 100% rename from content/blog/2020-02-gvl5-beta/gvl-login.png rename to content/news/2020-02-gvl5-beta/gvl-login.png diff --git a/content/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg b/content/news/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg similarity index 100% rename from content/blog/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg rename to content/news/2020-02-gvl5-beta/gvl-logo-landscape-2018.svg diff --git a/content/blog/2020-02-gvl5-beta/index.md b/content/news/2020-02-gvl5-beta/index.md similarity index 98% rename from content/blog/2020-02-gvl5-beta/index.md rename to content/news/2020-02-gvl5-beta/index.md index 4326eac7e7..4be22bcba4 100644 --- a/content/blog/2020-02-gvl5-beta/index.md +++ b/content/news/2020-02-gvl5-beta/index.md @@ -32,7 +32,7 @@ platform enables a more robust deployment process, a more reliable Galaxy service, improved system security, and new user features.
- GVL login
@@ -44,7 +44,7 @@ Getting access to a GVL instance is accomplished by launching your own instance A key feature of the GVL v5.0 is its uniform availability on at least 4 cloud providers, up from just 2 supported by the previous GVL. By combining the [CloudBridge library](http://cloudbridge.cloudve.org/), which provides an abstraction over differences in cloud providers, with software containers, it is now possible to launch an identical version of the GVL on Amazon, Google, Jetstream, and NeCTAR clouds (Azure support is pending). Choosing which provider you want to use is as simple as selecting the appropriate provider from the _Target_ dropdown in CloudLaunch.
- Multi-cloud selection
@@ -54,7 +54,7 @@ The GVL v5.0 also comes with an all-new implementation of CloudMan. CloudMan is Specifically for Galaxy, CloudMan offers a graphical management interface for Galaxy configuration files. Changing values of `galaxy.yml` or `job_conf.xml` for example can now be accomplished with a visual editor made available within the web browser. Adding new configuration files is also supported. Importantly, all configuration changes are performed with zero-downtime, so when you change a configuration value that requires a process restart, Galaxy will continue to be available and serve user requests during this entire period without users experiencing service disruption. An erroneous configuration can also be rolled back with the click of a button, as all configuration changes are versioned and tracked. Overall, we believe this makes Galaxy administration more accessible while retaining the benefits of a scripted configuration management approach. With this setup, for example, it is possible to manually edit a configuration file without having to setup and use a tool such as Ansible. Meanwhile, Helm will ensure the changes are tracked and can be reversed in case of an undesirable change.
- Visual Galaxy configuration via CloudMan
@@ -66,7 +66,7 @@ Since cloud computing became available, the ability to dynamically scale availab When should you scale? CloudMan now comes with a customizable status dashboard that monitors system status and allows you to react to the current load. By default, there are two dashboards: a system dashboard and a Galaxy dashboard. The system dashboard provides an overview of system resources, such as CPU and memory usage while the Galaxy dashboard provides insight into Galaxy metrics, such as the number of currently running jobs and distribution of tools used. The dashboard can be customized via [Grafana](https://grafana.com/) so the world is your oyster.
- CloudMan cluster metrics dashboard
@@ -78,7 +78,7 @@ GVL v5.0 also implements improved security practices. The authentication to the It is now possible to launch GVL instances on any supported cloud with an automatically signed SSL certificate so all the traffic to and from the instance is encrypted. The only requirements are you either have cloud DNS available on your cloud, in which case a DNS name can be automatically assigned for you, or you can pre-map a DNS name to the instance IP address yourself. During launch, select the “Cloud DNS” option and assign a domain name, or if your cloud provider does not support it, select the “Manually Specify” option, in which case you must map the DNS to a floating IP yourself before launching the cluster. CloudMan will take care of the rest to setup a valid SSL certificate that will be automatically renewed before it expires.
- SSL certificate
diff --git a/content/blog/2020-02-gvl5-beta/ssl.png b/content/news/2020-02-gvl5-beta/ssl.png similarity index 100% rename from content/blog/2020-02-gvl5-beta/ssl.png rename to content/news/2020-02-gvl5-beta/ssl.png diff --git a/content/blog/2020-04-gvl5-beta2/index.md b/content/news/2020-04-gvl5-beta2/index.md similarity index 100% rename from content/blog/2020-04-gvl5-beta2/index.md rename to content/news/2020-04-gvl5-beta2/index.md diff --git a/content/blog/2020-04-thompson/index.md b/content/news/2020-04-thompson/index.md similarity index 100% rename from content/blog/2020-04-thompson/index.md rename to content/news/2020-04-thompson/index.md diff --git a/content/news/2020-05-galaxy-update/index.md b/content/news/2020-05-galaxy-update/index.md index 892587696a..88c011e0c2 100644 --- a/content/news/2020-05-galaxy-update/index.md +++ b/content/news/2020-05-galaxy-update/index.md @@ -576,20 +576,20 @@ Extended job metadata collection
-
[GVL 5.0 Beta Releases](/blog/2020-04-gvl5-beta2/)
+
[GVL 5.0 Beta Releases](/news/2020-04-gvl5-beta2/)
By Alexandru Mahmoud, Nuwan Goonasekera, Luke Sargent, Enis Afgan, Alex Ostrovsky, and the GVL and Galaxy teams. GVL, the Genomics Virtual laboratory, had two beta releases in the first 4 months of 2020: -* [With Love: The All-new GVL 5.0 (beta)](/blog/2020-02-gvl5-beta/): Now more reliable, with better security, and with new features. -* [GVL 5.0-beta2 release](/blog/2020-04-gvl5-beta2/): 30% faster and single sign-on, ohh my +* [With Love: The All-new GVL 5.0 (beta)](/news/2020-02-gvl5-beta/): Now more reliable, with better security, and with new features. +* [GVL 5.0-beta2 release](/news/2020-04-gvl5-beta2/): 30% faster and single sign-on, ohh my The GVL makes dedicated, production-grade installations of Galaxy available on cloud providers, all via a web browser. The GVL has been used extensively whenever public and shared servers were not suitable. The GVL 5.0 is a ground-up rewrite of the GVL based on Kubernetes and containerization technologies. [Galaxy Helm 3.1.0](https://github.com/galaxyproject/galaxy-helm) was also released simultaneously. -GVL +GVL
diff --git a/content/blog/2020-06-go-global/index.md b/content/news/2020-06-go-global/index.md similarity index 100% rename from content/blog/2020-06-go-global/index.md rename to content/news/2020-06-go-global/index.md diff --git a/content/blog/2020-06-gvl5-beta3/gvl-apps.png b/content/news/2020-06-gvl5-beta3/gvl-apps.png similarity index 100% rename from content/blog/2020-06-gvl5-beta3/gvl-apps.png rename to content/news/2020-06-gvl5-beta3/gvl-apps.png diff --git a/content/blog/2020-06-gvl5-beta3/gvl-projects.png b/content/news/2020-06-gvl5-beta3/gvl-projects.png similarity index 100% rename from content/blog/2020-06-gvl5-beta3/gvl-projects.png rename to content/news/2020-06-gvl5-beta3/gvl-projects.png diff --git a/content/blog/2020-06-gvl5-beta3/index.md b/content/news/2020-06-gvl5-beta3/index.md similarity index 98% rename from content/blog/2020-06-gvl5-beta3/index.md rename to content/news/2020-06-gvl5-beta3/index.md index 7d151df7b3..fa67459115 100644 --- a/content/blog/2020-06-gvl5-beta3/index.md +++ b/content/news/2020-06-gvl5-beta3/index.md @@ -48,7 +48,7 @@ or be made available to targeted users.
-[![](./gvl-projects.png)](/blog/2020-06-gvl5-beta3/gvl-projects.png) +[![](./gvl-projects.png)](/news/2020-06-gvl5-beta3/gvl-projects.png)
@@ -79,7 +79,7 @@ those applications that are needed for the analysis.
-[![](./gvl-apps.png)](/blog/2020-06-gvl5-beta3/gvl-apps.png) +[![](./gvl-apps.png)](/news/2020-06-gvl5-beta3/gvl-apps.png)
diff --git a/content/news/2020-07-galaxy-update/index.md b/content/news/2020-07-galaxy-update/index.md index f94b8c4c5c..a1df79229f 100644 --- a/content/news/2020-07-galaxy-update/index.md +++ b/content/news/2020-07-galaxy-update/index.md @@ -347,12 +347,12 @@ The [US Food and Drug Administration](https://www.fda.gov/home) has an opening f
-
[Multi-tenant, multi-project GVL with Galaxy, Jupyter, Terminal, and RStudio](/blog/2020-06-gvl5-beta3/)
+
[Multi-tenant, multi-project GVL with Galaxy, Jupyter, Terminal, and RStudio](/news/2020-06-gvl5-beta3/)
By Alexandru Mahmoud, Nuwan Goonasekera, Enis Afgan. The GVL Beta 3 release features complete analysis on one platform, including training and collaboration. -GVL Beta 3 +GVL Beta 3
@@ -369,7 +369,7 @@ A conversation with [Dave Clements](/people/dave-clements/) about moving BCC2020 # Releases -See the GVL Beta 3 release [described in the blog](/blog/2020-06-gvl5-beta3/) (and above). +See the GVL Beta 3 release [described in the blog](/news/2020-06-gvl5-beta3/) (and above).
diff --git a/content/blog/2020-07-gigablog/index.md b/content/news/2020-07-gigablog/index.md similarity index 100% rename from content/blog/2020-07-gigablog/index.md rename to content/news/2020-07-gigablog/index.md diff --git a/content/blog/2020-07-gvl5-beta4/gvl-data-browser.png b/content/news/2020-07-gvl5-beta4/gvl-data-browser.png similarity index 100% rename from content/blog/2020-07-gvl5-beta4/gvl-data-browser.png rename to content/news/2020-07-gvl5-beta4/gvl-data-browser.png diff --git a/content/blog/2020-07-gvl5-beta4/gvl-s3-mount.png b/content/news/2020-07-gvl5-beta4/gvl-s3-mount.png similarity index 100% rename from content/blog/2020-07-gvl5-beta4/gvl-s3-mount.png rename to content/news/2020-07-gvl5-beta4/gvl-s3-mount.png diff --git a/content/blog/2020-07-gvl5-beta4/index.md b/content/news/2020-07-gvl5-beta4/index.md similarity index 97% rename from content/blog/2020-07-gvl5-beta4/index.md rename to content/news/2020-07-gvl5-beta4/index.md index e9c31c4fc4..f8727a4d20 100644 --- a/content/blog/2020-07-gvl5-beta4/index.md +++ b/content/news/2020-07-gvl5-beta4/index.md @@ -37,7 +37,7 @@ local folder. Think of the GVL as your data repository in the cloud.
-[![](./gvl-data-browser.png)](/blog/2020-07-gvl5-beta4/gvl-data-browser.png) +[![](./gvl-data-browser.png)](/news/2020-07-gvl5-beta4/gvl-data-browser.png)
@@ -53,7 +53,7 @@ web console and the content of that same bucket linked to a GVL instance.
-[![](./gvl-s3-mount.png)](/blog/2020-07-gvl5-beta4/gvl-s3-mount.png) +[![](./gvl-s3-mount.png)](/news/2020-07-gvl5-beta4/gvl-s3-mount.png)
diff --git a/content/blog/2020-08-10k-pubs/index.md b/content/news/2020-08-10k-pubs/index.md similarity index 99% rename from content/blog/2020-08-10k-pubs/index.md rename to content/news/2020-08-10k-pubs/index.md index e90ebd8ff2..5227c1f6ca 100644 --- a/content/blog/2020-08-10k-pubs/index.md +++ b/content/news/2020-08-10k-pubs/index.md @@ -468,7 +468,7 @@ From 2013 through 2019 the number of pubs per year increased by an average of 25 Note that it took * [44 months to reach 2,500 publications](/news/first2500-papers/), -* [26 months to add the next 2,500 publications](/blog/2017-10-5000-pubs/), +* [26 months to add the next 2,500 publications](/news/2017-10-5000-pubs/), * 18 months to add the next 2,500 (data not shown), and * 16 months to add the most recent 2,500 pubs. @@ -476,7 +476,7 @@ If trends continue, we will hit 20,000 pubs by 2024. ## Methods -The most obvious trend is that **there are a lot of pubs using Galaxy in their methods**. 59% of all publications mention Galaxy in their methods section, up from 51% of [the first 5000 pubs](/blog/2017-10-5000-pubs/). So far in 2020, 72% of all pubs are tagged *Methods*. +The most obvious trend is that **there are a lot of pubs using Galaxy in their methods**. 59% of all publications mention Galaxy in their methods section, up from 51% of [the first 5000 pubs](/news/2017-10-5000-pubs/). So far in 2020, 72% of all pubs are tagged *Methods*. This trend doesn't show any sign of slowing down. @@ -541,7 +541,7 @@ Galaxy has appeared in over 1800 journals. The 20 most popular journals in the * *Genome Announcements* was re-titled *Microbiology Resource Announcements* in July 2018. -There are 6 journals in the top 20 that weren't there [when we hit 5000 pubs](/blog/2017-10-5000-pubs/#journals). All 6 newcomers are open access. +There are 6 journals in the top 20 that weren't there [when we hit 5000 pubs](/news/2017-10-5000-pubs/#journals). All 6 newcomers are open access. ## Open Access is Rising diff --git a/content/blog/2020-08-10k-pubs/top-20-journals-over-time.svg b/content/news/2020-08-10k-pubs/top-20-journals-over-time.svg similarity index 100% rename from content/blog/2020-08-10k-pubs/top-20-journals-over-time.svg rename to content/news/2020-08-10k-pubs/top-20-journals-over-time.svg diff --git a/content/blog/2020-08-10k-pubs/top-20-slice.png b/content/news/2020-08-10k-pubs/top-20-slice.png similarity index 100% rename from content/blog/2020-08-10k-pubs/top-20-slice.png rename to content/news/2020-08-10k-pubs/top-20-slice.png diff --git a/content/blog/2020-08-bcc2020-lessons/index.md b/content/news/2020-08-bcc2020-lessons/index.md similarity index 100% rename from content/blog/2020-08-bcc2020-lessons/index.md rename to content/news/2020-08-bcc2020-lessons/index.md diff --git a/content/blog/2020-08-training/index.md b/content/news/2020-08-training/index.md similarity index 100% rename from content/blog/2020-08-training/index.md rename to content/news/2020-08-training/index.md diff --git a/content/news/2020-09-galaxy-update/index.md b/content/news/2020-09-galaxy-update/index.md index 2e7860cf7a..23b3558b90 100644 --- a/content/news/2020-09-galaxy-update/index.md +++ b/content/news/2020-09-galaxy-update/index.md @@ -244,13 +244,13 @@ Here's what people are saying right now:
-
[GVL 5.0-beta4: data browser, project-level isolation, and Galaxy 20.05](/blog/2020-07-gvl5-beta4/)
+
[GVL 5.0-beta4: data browser, project-level isolation, and Galaxy 20.05](/news/2020-07-gvl5-beta4/)
By Nuwan Goonasekera, Alexandru Mahmoud, Mohamad Safadieh, Enis Afgan A data browser, project-level isolation, and the latest release of Galaxy. -GVL Beta 5 +GVL Beta 5
@@ -297,13 +297,13 @@ The COVID-19 pandemic has forced a rapid - and unplanned - shift towards online
-
[Galaxy: the first 10,000 pubs](/blog/2020-08-10k-pubs/)
+
[Galaxy: the first 10,000 pubs](/news/2020-08-10k-pubs/)
By Dave Clements Ten thousand publications have used, referenced, extended and implemented Galaxy in the past 15 years. Half of those pubs appeared in just the last 3 years. Learn about this and other trends in the Galaxy community, as revealed by what we are publishing. -Top 20 Galaxy Journals +Top 20 Galaxy Journals
diff --git a/content/news/2020-10-galaxy-update/index.md b/content/news/2020-10-galaxy-update/index.md index e7174cfe9e..6fef939256 100644 --- a/content/news/2020-10-galaxy-update/index.md +++ b/content/news/2020-10-galaxy-update/index.md @@ -239,7 +239,7 @@ How to use **[refgenie](http://refgenie.databio.org/)** with your local instance # Publications -Pub curation activities [are on hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. +Pub curation activities [are on hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway.
diff --git a/content/blog/2020-11-earlham/index.md b/content/news/2020-11-earlham/index.md similarity index 100% rename from content/blog/2020-11-earlham/index.md rename to content/news/2020-11-earlham/index.md diff --git a/content/blog/2020-11-eosc/index.md b/content/news/2020-11-eosc/index.md similarity index 100% rename from content/blog/2020-11-eosc/index.md rename to content/news/2020-11-eosc/index.md diff --git a/content/news/2020-11-galaxy-update/index.md b/content/news/2020-11-galaxy-update/index.md index b71c3ce1b4..6d20bd12f1 100644 --- a/content/news/2020-11-galaxy-update/index.md +++ b/content/news/2020-11-galaxy-update/index.md @@ -411,7 +411,7 @@ This tutorial got a thorough update from [Mallory Freeberg](https://training.gal # Publications -Pub curation activities [are on hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/news/2020-12-galaxy-update/index.md b/content/news/2020-12-galaxy-update/index.md index 1383f2eb32..6b28b33a8d 100644 --- a/content/news/2020-12-galaxy-update/index.md +++ b/content/news/2020-12-galaxy-update/index.md @@ -359,7 +359,7 @@ This tutorial uses sequencing data obtained through the MinION sequencer (Oxford # Publications -Pub curation activities [are on hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/news/2021-01-galaxy-update/index.md b/content/news/2021-01-galaxy-update/index.md index 9800e89ea2..f69535211c 100644 --- a/content/news/2021-01-galaxy-update/index.md +++ b/content/news/2021-01-galaxy-update/index.md @@ -330,7 +330,7 @@ Learn your way through Galaxy interface and functionalities with automatically g # Publications -Pub curation activities [are on hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
[Metaproteomics Analysis of SARS-CoV-2-Infected Patient Samples Reveals Presence of Potential Coinfecting Microorganisms](https://doi.org/10.1021/acs.jproteome.0c00822)
diff --git a/content/blog/2021-01-terra/index.md b/content/news/2021-01-terra/index.md similarity index 100% rename from content/blog/2021-01-terra/index.md rename to content/news/2021-01-terra/index.md diff --git a/content/blog/2021-02-admin-training/index.md b/content/news/2021-02-admin-training/index.md similarity index 100% rename from content/blog/2021-02-admin-training/index.md rename to content/news/2021-02-admin-training/index.md diff --git a/content/blog/2021-02-change-datatype/index.md b/content/news/2021-02-change-datatype/index.md similarity index 100% rename from content/blog/2021-02-change-datatype/index.md rename to content/news/2021-02-change-datatype/index.md diff --git a/content/blog/2021-02-covid-intrahost/index.md b/content/news/2021-02-covid-intrahost/index.md similarity index 100% rename from content/blog/2021-02-covid-intrahost/index.md rename to content/news/2021-02-covid-intrahost/index.md diff --git a/content/blog/2021-02-covid-intrahost/spatial-density.png b/content/news/2021-02-covid-intrahost/spatial-density.png similarity index 100% rename from content/blog/2021-02-covid-intrahost/spatial-density.png rename to content/news/2021-02-covid-intrahost/spatial-density.png diff --git a/content/news/2021-02-galaxy-update/index.md b/content/news/2021-02-galaxy-update/index.md index 0d7b0f82cd..66fa0b83f1 100644 --- a/content/news/2021-02-galaxy-update/index.md +++ b/content/news/2021-02-galaxy-update/index.md @@ -643,7 +643,7 @@ This genome assembly tutorial got an update from Anna Syme. # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/blog/2021-02-securing-galaxy/index.md b/content/news/2021-02-securing-galaxy/index.md similarity index 100% rename from content/blog/2021-02-securing-galaxy/index.md rename to content/news/2021-02-securing-galaxy/index.md diff --git a/content/news/2021-03-galaxy-update/index.md b/content/news/2021-03-galaxy-update/index.md index 5df24f00b0..d9a4708199 100644 --- a/content/news/2021-03-galaxy-update/index.md +++ b/content/news/2021-03-galaxy-update/index.md @@ -98,7 +98,7 @@ Our hope is that this framework will enable us to become a truly global communit
-![Themes in Slack over time](/blog/2021-03-smorgasbord/slack-themes.png) +![Themes in Slack over time](/news/2021-03-smorgasbord/slack-themes.png)
@@ -553,7 +553,7 @@ By Wolfgang Maier, Marius Van Den Beek, Björn Grüning, Sergei Kosakovsky Pond, This analysis of intrahost variation in the COVID pandemic is split into two postings (**[Part 1](https://virological.org/t/global-framework-for-sars-cov-2-data-analysis-application-to-intrahost-variation-part-1/623)** and **[Part 2](https://virological.org/t/global-framework-for-sars-cov-2-data-analysis-application-to-intrahost-variation-part-2/624)**). -![Part of figure 8, Spatial density of variants per gene/product](/blog/2021-02-covid-intrahost/spatial-density.png) +![Part of figure 8, Spatial density of variants per gene/product](/news/2021-02-covid-intrahost/spatial-density.png)
@@ -698,7 +698,7 @@ In this second edition, and for six consecutive weeks, speakers from all around # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/blog/2021-03-smorgasbord/index.md b/content/news/2021-03-smorgasbord/index.md similarity index 100% rename from content/blog/2021-03-smorgasbord/index.md rename to content/news/2021-03-smorgasbord/index.md diff --git a/content/blog/2021-03-smorgasbord/slack-themes.png b/content/news/2021-03-smorgasbord/slack-themes.png similarity index 100% rename from content/blog/2021-03-smorgasbord/slack-themes.png rename to content/news/2021-03-smorgasbord/slack-themes.png diff --git a/content/blog/2021-03-tips-and-tricks/conditional-flow-control.png b/content/news/2021-03-tips-and-tricks/conditional-flow-control.png similarity index 100% rename from content/blog/2021-03-tips-and-tricks/conditional-flow-control.png rename to content/news/2021-03-tips-and-tricks/conditional-flow-control.png diff --git a/content/blog/2021-03-tips-and-tricks/index.md b/content/news/2021-03-tips-and-tricks/index.md similarity index 100% rename from content/blog/2021-03-tips-and-tricks/index.md rename to content/news/2021-03-tips-and-tricks/index.md diff --git a/content/blog/2021-03-which-galaxy/index.md b/content/news/2021-03-which-galaxy/index.md similarity index 100% rename from content/blog/2021-03-which-galaxy/index.md rename to content/news/2021-03-which-galaxy/index.md diff --git a/content/news/2021-04-galaxy-update/index.md b/content/news/2021-04-galaxy-update/index.md index 8626dcfe55..01c4f69edc 100644 --- a/content/news/2021-04-galaxy-update/index.md +++ b/content/news/2021-04-galaxy-update/index.md @@ -450,7 +450,7 @@ By [Nolan Woods](https://www.linkedin.com/in/nolan-woods) Tips for collections, mapping, AWK, flow control, writing tool wrappers, and more. -![Flow Control: Conditional](/blog/2021-03-tips-and-tricks/conditional-flow-control.png) +![Flow Control: Conditional](/news/2021-03-tips-and-tricks/conditional-flow-control.png)
@@ -621,7 +621,7 @@ The Galaxy Training Network now has a [Frequently Asked Questions (FAQ) page](ht # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/blog/2021-05-galaxy-helm-chart-v4/index.md b/content/news/2021-05-galaxy-helm-chart-v4/index.md similarity index 100% rename from content/blog/2021-05-galaxy-helm-chart-v4/index.md rename to content/news/2021-05-galaxy-helm-chart-v4/index.md diff --git a/content/blog/2021-05-galaxy-helm-chart-v4/no-cvmfs.png b/content/news/2021-05-galaxy-helm-chart-v4/no-cvmfs.png similarity index 100% rename from content/blog/2021-05-galaxy-helm-chart-v4/no-cvmfs.png rename to content/news/2021-05-galaxy-helm-chart-v4/no-cvmfs.png diff --git a/content/news/2021-05-galaxy-update/index.md b/content/news/2021-05-galaxy-update/index.md index ecbbe61228..9763b37499 100644 --- a/content/news/2021-05-galaxy-update/index.md +++ b/content/news/2021-05-galaxy-update/index.md @@ -570,7 +570,7 @@ This [slide deck](https://training.galaxyproject.org/training-material/topics/tr # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/news/2021-06-galaxy-update/index.md b/content/news/2021-06-galaxy-update/index.md index 5c8e830631..9e7745094a 100644 --- a/content/news/2021-06-galaxy-update/index.md +++ b/content/news/2021-06-galaxy-update/index.md @@ -551,7 +551,7 @@ Have you noticed a new emphasis on Galaxy Developer training? The new BioBlend # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
@@ -650,15 +650,15 @@ Fahrner, M., Kook, L., Fröhlich, K., Biniossek, M. L., & Schilling, O. (2021).
-[Galaxy Helm Chart v4.0](/blog/2021-05-galaxy-helm-chart-v4/) +[Galaxy Helm Chart v4.0](/news/2021-05-galaxy-helm-chart-v4/)
The Galaxy Helm chart automates the mechanics of deploying Galaxy into a single package. The same package can be used to deploy Galaxy for development, testing, or production. With v4, the chart also introduces improvements for managing Galaxy over time. -See this [blog post](/blog/2021-05-galaxy-helm-chart-v4/) by Alex Mahmoud, Nuwan Goonasekera, Keith Suderman, and Enis Afgan for details. +See this [blog post](/news/2021-05-galaxy-helm-chart-v4/) by Alex Mahmoud, Nuwan Goonasekera, Keith Suderman, and Enis Afgan for details. -![Galaxy Helm](/blog/2021-05-galaxy-helm-chart-v4/no-cvmfs.png) +![Galaxy Helm](/news/2021-05-galaxy-helm-chart-v4/no-cvmfs.png)
diff --git a/content/blog/2021-06-terra/index.md b/content/news/2021-06-terra/index.md similarity index 100% rename from content/blog/2021-06-terra/index.md rename to content/news/2021-06-terra/index.md diff --git a/content/news/2021-07-galaxy-update/index.md b/content/news/2021-07-galaxy-update/index.md index cf6b5c9e88..ef219fa0c9 100644 --- a/content/news/2021-07-galaxy-update/index.md +++ b/content/news/2021-07-galaxy-update/index.md @@ -350,7 +350,7 @@ How to obtain, run and combine these workflows appropriately for different types # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/blog/2021-08-21-05-upgrade/index.md b/content/news/2021-08-21-05-upgrade/index.md similarity index 100% rename from content/blog/2021-08-21-05-upgrade/index.md rename to content/news/2021-08-21-05-upgrade/index.md diff --git a/content/blog/2021-08-aus-highmem/index.md b/content/news/2021-08-aus-highmem/index.md similarity index 100% rename from content/blog/2021-08-aus-highmem/index.md rename to content/news/2021-08-aus-highmem/index.md diff --git a/content/news/2021-08-galaxy-update/index.md b/content/news/2021-08-galaxy-update/index.md index 1319998ebd..454fc4f90b 100644 --- a/content/news/2021-08-galaxy-update/index.md +++ b/content/news/2021-08-galaxy-update/index.md @@ -445,7 +445,7 @@ We have [created a page](https://training.galaxyproject.org/training-material/ne # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/blog/2021-08-sanbi/index.md b/content/news/2021-08-sanbi/index.md similarity index 100% rename from content/blog/2021-08-sanbi/index.md rename to content/news/2021-08-sanbi/index.md diff --git a/content/blog/2021-09-cancer-informatics-wg-update/ci_logo.png b/content/news/2021-09-cancer-informatics-wg-update/ci_logo.png similarity index 100% rename from content/blog/2021-09-cancer-informatics-wg-update/ci_logo.png rename to content/news/2021-09-cancer-informatics-wg-update/ci_logo.png diff --git a/content/blog/2021-09-cancer-informatics-wg-update/index.md b/content/news/2021-09-cancer-informatics-wg-update/index.md similarity index 100% rename from content/blog/2021-09-cancer-informatics-wg-update/index.md rename to content/news/2021-09-cancer-informatics-wg-update/index.md diff --git a/content/blog/2021-09-cancer-informatics-wg-update/mcmicro.png b/content/news/2021-09-cancer-informatics-wg-update/mcmicro.png similarity index 100% rename from content/blog/2021-09-cancer-informatics-wg-update/mcmicro.png rename to content/news/2021-09-cancer-informatics-wg-update/mcmicro.png diff --git a/content/blog/2021-09-cancer-informatics-wg-update/oncogene.png b/content/news/2021-09-cancer-informatics-wg-update/oncogene.png similarity index 100% rename from content/blog/2021-09-cancer-informatics-wg-update/oncogene.png rename to content/news/2021-09-cancer-informatics-wg-update/oncogene.png diff --git a/content/news/2021-09-galaxy-update/index.md b/content/news/2021-09-galaxy-update/index.md index d88d64e1e2..1fc8280357 100644 --- a/content/news/2021-09-galaxy-update/index.md +++ b/content/news/2021-09-galaxy-update/index.md @@ -103,7 +103,7 @@ of Galaxy have made their rounds in the scientific communities. The New Galaxy Community Hub Implementation
-You may not have noticed, but things have changed a lot in the Galaxy Community Hub. We are happy to unveil the new Galaxy Community Hub. This is a ground-up rewrite of the back-end for the site you're reading right now, with Gridsome replacing Metalsmith. A complete site restructure, and federation of Galaxy community sites is coming. [Read more](/blog/2021-09-hub2/). +You may not have noticed, but things have changed a lot in the Galaxy Community Hub. We are happy to unveil the new Galaxy Community Hub. This is a ground-up rewrite of the back-end for the site you're reading right now, with Gridsome replacing Metalsmith. A complete site restructure, and federation of Galaxy community sites is coming. [Read more](/news/2021-09-hub2/).
@@ -409,7 +409,7 @@ A COVID-19 focused version of the UseGalaxy.fr server. This server provides num
-[Cancer informatics working group T2 update](/blog/2021-09-cancer-informatics-wg-update/) +[Cancer informatics working group T2 update](/news/2021-09-cancer-informatics-wg-update/)
@@ -417,7 +417,7 @@ By Luke Sargent. An update on some of our work in our NCII TCR project and our NCI HTAN center: multiplex tissue image analysis and the beautiful [iobio applications](https://iobio.io/) are coming to Galaxy. -![MCMICRO on GVL](/blog/2021-09-cancer-informatics-wg-update/mcmicro.png) +![MCMICRO on GVL](/news/2021-09-cancer-informatics-wg-update/mcmicro.png)
@@ -530,7 +530,7 @@ How to submit raw viral sequence reads to the European Nucleotide Archive using # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/blog/2021-09-hub2/content-dir-dynamic-pages.svg b/content/news/2021-09-hub2/content-dir-dynamic-pages.svg similarity index 100% rename from content/blog/2021-09-hub2/content-dir-dynamic-pages.svg rename to content/news/2021-09-hub2/content-dir-dynamic-pages.svg diff --git a/content/blog/2021-09-hub2/content-dir-images.svg b/content/news/2021-09-hub2/content-dir-images.svg similarity index 100% rename from content/blog/2021-09-hub2/content-dir-images.svg rename to content/news/2021-09-hub2/content-dir-images.svg diff --git a/content/blog/2021-09-hub2/content-dir-static-inserts.svg b/content/news/2021-09-hub2/content-dir-static-inserts.svg similarity index 100% rename from content/blog/2021-09-hub2/content-dir-static-inserts.svg rename to content/news/2021-09-hub2/content-dir-static-inserts.svg diff --git a/content/blog/2021-09-hub2/index.md b/content/news/2021-09-hub2/index.md similarity index 100% rename from content/blog/2021-09-hub2/index.md rename to content/news/2021-09-hub2/index.md diff --git a/content/blog/2021-09-human-genetics-wg-update/index.md b/content/news/2021-09-human-genetics-wg-update/index.md similarity index 100% rename from content/blog/2021-09-human-genetics-wg-update/index.md rename to content/news/2021-09-human-genetics-wg-update/index.md diff --git a/content/news/2021-10-galaxy-update/index.md b/content/news/2021-10-galaxy-update/index.md index c5c0e91049..8132fd231e 100644 --- a/content/news/2021-10-galaxy-update/index.md +++ b/content/news/2021-10-galaxy-update/index.md @@ -374,7 +374,7 @@ Tomas has shared with us his hilarious experience when running a workshop from h
-[Human Genetics working group T2 update](/blog/2021-09-human-genetics-wg-update/) +[Human Genetics working group T2 update](/news/2021-09-human-genetics-wg-update/)
@@ -462,7 +462,7 @@ The [Galaxy Training Network](https://training.galaxyproject.org/) would like to # Publications -Pub curation activities [are on a semi-hiatus right now](/blog/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs: +Pub curation activities [are on a semi-hiatus right now](/news/2020-08-10k-pubs/#the-future) but a few publications referencing, using, extending, and implementing Galaxy were added to the [Galaxy Publication Library](https://www.zotero.org/groups/galaxy) anyway. Here are the new open access *Galactic* and *Stellar* pubs:
diff --git a/content/blog/2021-10-sars-training-africa/index.md b/content/news/2021-10-sars-training-africa/index.md similarity index 100% rename from content/blog/2021-10-sars-training-africa/index.md rename to content/news/2021-10-sars-training-africa/index.md diff --git a/content/blog/2021-10-sunsetting-cloudlaunch/index.md b/content/news/2021-10-sunsetting-cloudlaunch/index.md similarity index 100% rename from content/blog/2021-10-sunsetting-cloudlaunch/index.md rename to content/news/2021-10-sunsetting-cloudlaunch/index.md diff --git a/content/blog/2021-11-02-outreachy-experience-chinonye/index.md b/content/news/2021-11-02-outreachy-experience-chinonye/index.md similarity index 100% rename from content/blog/2021-11-02-outreachy-experience-chinonye/index.md rename to content/news/2021-11-02-outreachy-experience-chinonye/index.md diff --git a/content/blog/2021-11-02-outreachy-experience-pia/index.md b/content/news/2021-11-02-outreachy-experience-pia/index.md similarity index 100% rename from content/blog/2021-11-02-outreachy-experience-pia/index.md rename to content/news/2021-11-02-outreachy-experience-pia/index.md diff --git a/content/blog/2021-11-02-outreachy-experience-rahmot/index.md b/content/news/2021-11-02-outreachy-experience-rahmot/index.md similarity index 100% rename from content/blog/2021-11-02-outreachy-experience-rahmot/index.md rename to content/news/2021-11-02-outreachy-experience-rahmot/index.md diff --git a/content/blog/2021-11-02-outreachy-how-many-communities/index.md b/content/news/2021-11-02-outreachy-how-many-communities/index.md similarity index 100% rename from content/blog/2021-11-02-outreachy-how-many-communities/index.md rename to content/news/2021-11-02-outreachy-how-many-communities/index.md diff --git a/content/blog/2021-11-RShiny_GxIT/index.md b/content/news/2021-11-RShiny_GxIT/index.md similarity index 100% rename from content/blog/2021-11-RShiny_GxIT/index.md rename to content/news/2021-11-RShiny_GxIT/index.md diff --git a/content/blog/2021-11-forces/index.md b/content/news/2021-11-forces/index.md similarity index 100% rename from content/blog/2021-11-forces/index.md rename to content/news/2021-11-forces/index.md diff --git a/content/news/2021-11-galaxy-update/index.md b/content/news/2021-11-galaxy-update/index.md index 1daf3dbfcd..c7e96c1fb5 100644 --- a/content/news/2021-11-galaxy-update/index.md +++ b/content/news/2021-11-galaxy-update/index.md @@ -369,7 +369,7 @@ The switch to online bioinformatics training forced by the COVID-19 pandemic has
-[Sunsetting the CloudLaunch service](/blog/2021-10-sunsetting-cloudlaunch/) +[Sunsetting the CloudLaunch service](/news/2021-10-sunsetting-cloudlaunch/)
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[launched](/blog/2021-09-hub2/) the new version of the Community Hub. This change brought author-friendly features, a modern, Vue-based architecture, and a fast browsing experience. +A year ago we [launched](/news/2021-09-hub2/) the new version of the Community Hub. This change brought author-friendly features, a modern, Vue-based architecture, and a fast browsing experience. But galaxyproject.org is not the only Galaxy community site out there. [Communities](https://galaxyproject.eu) [across](https://site.usegalaxy.org.au) the [world](https://www.galaxyproject.in) run websites with similar features and a similar purpose. This leads to duplication of effort in a few ways. We reimplement similar features and each have to maintain a separate hosting setup. Another duplication is in cross-posting of updates. The majority of [news](/news/) and [events](/events/) posts are pointers to posts on other sites, often to other community sites. diff --git a/content/news/2022-11-28-Simon-Gladman/index.md b/content/news/2022-11-28-Simon-Gladman/index.md index 619ff2c779..eeae255655 100644 --- a/content/news/2022-11-28-Simon-Gladman/index.md +++ b/content/news/2022-11-28-Simon-Gladman/index.md @@ -12,7 +12,7 @@ autotoc: false
-[Simon Gladman](/blog/2018-12-cotm-simon-gladman/) loved unusual watches. During European Galaxy days this past October Simon was showing all of us his latest solar watch. +[Simon Gladman](/news/2018-12-cotm-simon-gladman/) loved unusual watches. During European Galaxy days this past October Simon was showing all of us his latest solar watch. He was passionate about everything that he did. He was a cheesemaker, [a firefighter](https://www.topinfoguide.com/death-obituary/simon-gladman-obituary-news-in-loving-memory-of-simon-gladman-from-wyndham-vale-fire-brigade/), a board game enthusiast, beloved father and one of the most genuinely good and generous people that you can imagine. He was ingrained in the fabric of the Galaxy Project and a member of the [Australian Biocommons](https://www.biocommons.org.au/news/simon-gladman). diff --git a/content/blog/2022-12-05-CoC-EoY-Update-2022/index.md b/content/news/2022-12-05-CoC-EoY-Update-2022/index.md similarity index 100% rename from content/blog/2022-12-05-CoC-EoY-Update-2022/index.md rename to content/news/2022-12-05-CoC-EoY-Update-2022/index.md diff --git a/content/blog/2023-07-FGB1/index.md b/content/news/2023-07-FGB1/index.md similarity index 100% rename from content/blog/2023-07-FGB1/index.md rename to content/news/2023-07-FGB1/index.md diff --git a/content/blog/2023-08-14-GCC2023-Meeting-Report/14732381-D437-43F0-8426-334EBDEA43F2_1_105_c.jpeg b/content/news/2023-08-14-GCC2023-Meeting-Report/14732381-D437-43F0-8426-334EBDEA43F2_1_105_c.jpeg similarity index 100% rename from content/blog/2023-08-14-GCC2023-Meeting-Report/14732381-D437-43F0-8426-334EBDEA43F2_1_105_c.jpeg rename to 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content/blog/2023-08-21-Paper-Highlight/index.md rename to content/news/2023-08-21-Paper-Highlight/index.md diff --git a/content/blog/Galaxy_Climate_Project_Introduction_Blog_1/Galaxy_Climate_Project_Outreachy_Blog1.png b/content/news/Galaxy_Climate_Project_Introduction_Blog_1/Galaxy_Climate_Project_Outreachy_Blog1.png similarity index 100% rename from content/blog/Galaxy_Climate_Project_Introduction_Blog_1/Galaxy_Climate_Project_Outreachy_Blog1.png rename to content/news/Galaxy_Climate_Project_Introduction_Blog_1/Galaxy_Climate_Project_Outreachy_Blog1.png diff --git a/content/blog/Galaxy_Climate_Project_Introduction_Blog_1/index.md b/content/news/Galaxy_Climate_Project_Introduction_Blog_1/index.md similarity index 100% rename from content/blog/Galaxy_Climate_Project_Introduction_Blog_1/index.md rename to content/news/Galaxy_Climate_Project_Introduction_Blog_1/index.md diff --git a/content/blog/main.md b/content/news/blogmain.md similarity index 100% rename from content/blog/main.md rename to content/news/blogmain.md diff --git a/content/news/community-log-board/index.md b/content/news/community-log-board/index.md index 3b4164fbec..95f2c9963a 100644 --- a/content/news/community-log-board/index.md +++ b/content/news/community-log-board/index.md @@ -5,9 +5,9 @@ subsites: [global, us] ---
Galaxy Community Log Board
-**Note: the Community Log Board was integrated into the [Galaxy Blog](/blog/) in September 2017.** +**Note: the Community Log Board was integrated into the [Galaxy Blog](/news/) in September 2017.** -The *[Galaxy Community Log Board](/blog/)* is a place to share how you addressed a particular task in your Galaxy deployment. Log entries describe specific solutions to particular tasks, such as the [details of what steps were taken to deploy Galaxy on particular platforms](/blog/2013-04-urgi-virtualisation/), or specific stumbling blocks when configuring Galaxy. Solutions can be described on this wiki, or just some metadata and a link to the description elsewhere. Log entries are an easy way to help others (and learn from others) by sharing what you've already done. If you have figured out or documented how to do something, then this is the ideal forum for sharing that information with the community. +The *[Galaxy Community Log Board](/news/)* is a place to share how you addressed a particular task in your Galaxy deployment. Log entries describe specific solutions to particular tasks, such as the [details of what steps were taken to deploy Galaxy on particular platforms](/news/2013-04-urgi-virtualisation/), or specific stumbling blocks when configuring Galaxy. Solutions can be described on this wiki, or just some metadata and a link to the description elsewhere. Log entries are an easy way to help others (and learn from others) by sharing what you've already done. If you have figured out or documented how to do something, then this is the ideal forum for sharing that information with the community.
@@ -19,6 +19,6 @@ The *[Galaxy Community Log Board](/blog/)* is a place to share how you addressed
-The [Galaxy Community Log Board](/blog/) describes how things can be done, and it complements the (also [recently announced](/news/galaxy-deployment-catalog/)) *Galaxy Deployments Catalog*, which describes different Galaxy installations. Both the [Log Board](/blog/) and the Deployments Catalog came out of discussions at the [GCC2013 GalaxyAdmins Birds-of-a-Feather gathering](/events/gcc2013/bof/galaxy-admins/). Thanks to everyone who attended that BoF. +The [Galaxy Community Log Board](/news/) describes how things can be done, and it complements the (also [recently announced](/news/galaxy-deployment-catalog/)) *Galaxy Deployments Catalog*, which describes different Galaxy installations. Both the [Log Board](/news/) and the Deployments Catalog came out of discussions at the [GCC2013 GalaxyAdmins Birds-of-a-Feather gathering](/events/gcc2013/bof/galaxy-admins/). Thanks to everyone who attended that BoF. [Dave Clements](/people/dave-clements/) diff --git a/content/news/main.md b/content/news/main.md index 5de67f29b2..16c98c2780 100644 --- a/content/news/main.md +++ b/content/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/pasteur/news/main.md b/content/pasteur/news/main.md index 992951eb52..af76679447 100644 --- a/content/pasteur/news/main.md +++ b/content/pasteur/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/publication-library/index.md b/content/publication-library/index.md index c7f01fde7a..4a30802a99 100644 --- a/content/publication-library/index.md +++ b/content/publication-library/index.md @@ -68,9 +68,9 @@ Please see the [instructions for contributing](/publication-library/contribute). * [1000th Galaxy CiteULike Paper](/news/galaxy-cite-u-like-paper1000/), June 6, 2013 * [2500 Galaxy Papers & Counting](/news/first2500-papers/), August 12, 2015 -* [Galaxy: the first 5,000 pubs](/blog/2017-10-5000-pubs/), October 16, 2017 +* [Galaxy: the first 5,000 pubs](/news/2017-10-5000-pubs/), October 16, 2017 * [7,500 pubs in library](https://twitter.com/tnabtaf/status/1121086728293343232), April 23, 2019 -* [Galaxy: the first 10,000 pubs](/blog/2020-08-10k-pubs/), August 26, 2020 +* [Galaxy: the first 10,000 pubs](/news/2020-08-10k-pubs/), August 26, 2020 ## CiteULike & Mendeley diff --git a/content/scientist/index.md b/content/scientist/index.md index 0623c60d42..64df7dcb15 100644 --- a/content/scientist/index.md +++ b/content/scientist/index.md @@ -26,7 +26,7 @@ There are plenty of events happening worldwide and online, [check them out!](/ev ### News and blog posts -Take a look at the [news](/news/) and [blog posts](/blog/). +Take a look at the [news](/news/) and [blog posts](/news/). ## Where can you run your analysis? diff --git a/content/splash-archive/gtn-prokka/index.md b/content/splash-archive/gtn-prokka/index.md index 84be1472f8..68d8c44746 100644 --- a/content/splash-archive/gtn-prokka/index.md +++ b/content/splash-archive/gtn-prokka/index.md @@ -5,4 +5,4 @@ date: 2019-01-16 Want to do [Genome annotation with Prokka](https://galaxyproject.github.io/training-material/topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html)? There is a [Galaxy Training Network tutorial](http://galaxyproject.github.io/training-material/) for that. -[![Genome annotation with Prokka](/blog/2019-01-totm/annotation_with_prokka.png)](https://galaxyproject.github.io/training-material/topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html) +[![Genome annotation with Prokka](/news/2019-01-totm/annotation_with_prokka.png)](https://galaxyproject.github.io/training-material/topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html) diff --git a/content/splash/gvl-5/index.md b/content/splash/gvl-5/index.md index 67937cd0a4..4a3c67e1fe 100644 --- a/content/splash/gvl-5/index.md +++ b/content/splash/gvl-5/index.md @@ -3,6 +3,6 @@ title: "" date: "2020-01-21" --- -[![GVL 5.0 Beta Released](/images/galaxy-logos/gvl-5-0-banner.png)](/blog/2020-02-gvl5-beta/) +[![GVL 5.0 Beta Released](/images/galaxy-logos/gvl-5-0-banner.png)](/news/2020-02-gvl5-beta/) -# Learn what's new and how to access it in [this blog post](/blog/2020-02-gvl5-beta/). +# Learn what's new and how to access it in [this blog post](/news/2020-02-gvl5-beta/). diff --git a/content/us/news/main.md b/content/us/news/main.md index 5989b9e5df..2ec6f334d9 100644 --- a/content/us/news/main.md +++ b/content/us/news/main.md @@ -8,8 +8,6 @@ This page contains announcements of interest to the Galaxy Community. These include __items from the Galaxy Team or the Galaxy community__ and address anything that is of wide interest to the community. -Also see the *[Galactic Blog](/blog/)* for more. - ### Contribute To add a news item, create a new folder within the [_news folder_](https://github.com/galaxyproject/galaxy-hub/tree/master/content/news) with an _index.md_ file. It's probably easiest to copy the format from one of the other existing news items as a template. diff --git a/content/use/tab-public-server.md b/content/use/tab-public-server.md index e40f45cb43..0ee66a95ed 100644 --- a/content/use/tab-public-server.md +++ b/content/use/tab-public-server.md @@ -4,5 +4,5 @@ title: Public Servers Public Servers are accessible to (at least) any academic researcher in the world. Some require you to create/request an account, and they may have restrictive quotas, but often, to use these, just go to the website and start running analyses. These are free to use. -The folks are Freiburg have put together a [public Galaxy server dashboard](https://stats.galaxyproject.eu/d/000000020/public-galaxy-servers?orgId=1) to track the status and some of the supported features of the servers listed here. See the [blog post](/blog/2017-10-public-galaxy-dashboard/) for more info. +The folks are Freiburg have put together a [public Galaxy server dashboard](https://stats.galaxyproject.eu/d/000000020/public-galaxy-servers?orgId=1) to track the status and some of the supported features of the servers listed here. See the [blog post](/news/2017-10-public-galaxy-dashboard/) for more info. diff --git a/src/pages/Blog.vue b/src/pages/Blog.vue deleted file mode 100644 index f0536632b3..0000000000 --- a/src/pages/Blog.vue +++ /dev/null @@ -1,67 +0,0 @@ - - - - - -query { - main: insert(path: "/insert:/blog/main/") { - id - title - content - fileInfo { - path - } - } - footer: insert(path: "/insert:/blog/footer/") { - id - title - content - } - articles: allParentArticle(sortBy: "date", order: DESC, filter: {category: {eq: "blog"}, draft: {ne: true}}) { - totalCount - edges { - node { - id - title - tease - authors - source_blog - source_blog_url - external_url - date (format: "D MMM YYYY") - path - } - } - } -} - diff --git a/src/templates/Article.vue b/src/templates/Article.vue index 28e2d775b4..15b79b4a24 100644 --- a/src/templates/Article.vue +++ b/src/templates/Article.vue @@ -31,8 +31,6 @@ query Article($path: String!) { name url } - source_blog - source_blog_url skip_title_render redirect external_url