diff --git a/content/events/gcc2024/abstracts/index.md b/content/events/gcc2024/abstracts/index.md index 9131a2e4ab..58135d296e 100644 --- a/content/events/gcc2024/abstracts/index.md +++ b/content/events/gcc2024/abstracts/index.md @@ -4,12 +4,6 @@ autotoc: false -
- - Abstract submission form - -
- # GCC2024 abstracts @@ -53,7 +47,7 @@ propose fun activities as well, such as an evening run or a city tour. | ~~Apr 15~~ | Abstracts due for talks | | ~~May 1~~ | Talk reviews returned | | ~~May 15~~ | Abstracts due for posters/demos | -| May 21 | Poster/demo acceptance announcements | +| ~~May 21~~ | Poster/demo acceptance announcements | | Jun 15 | Deadline for submitting slides for your talk to the organizers | diff --git a/content/events/gcc2024/key-dates/index.md b/content/events/gcc2024/key-dates/index.md index 1854228144..906fd9de96 100644 --- a/content/events/gcc2024/key-dates/index.md +++ b/content/events/gcc2024/key-dates/index.md @@ -19,7 +19,7 @@ understand and don't mind. | ~~Apr 15~~ | [Abstracts due for talks](/events/gcc2024/abstracts/) | | ~~May 1~~ | Talk reviews returned | | ~~May 15~~ | [Abstracts due for posters/demos](/events/gcc2024/abstracts/) | -| May 21 | Poster/demo acceptance announcements | +| ~~May 21~~ | Poster/demo acceptance announcements | | May 26 | [Regular registration closes / Late registration opens](/events/gcc2024/register/) | | Jun 15 | Deadline for submitting slides for your talk to the organizers | | Jun 15 | Deadline for [registering a BoF](/events/gcc2024/abstracts/#birds-of-a-feather-bof-sessions) | diff --git a/content/events/gcc2024/schedule/index.md b/content/events/gcc2024/schedule/index.md index 2ba5893226..8dc86d12e4 100644 --- a/content/events/gcc2024/schedule/index.md +++ b/content/events/gcc2024/schedule/index.md @@ -6,52 +6,98 @@ autotoc: false ## Schedule -The schedule is where you can discover what’s happening when at GCC2024. +The schedule is where you can discover what’s happening when at GCC2024. List of +talks is available [lower on the page](#talks) and the abstract book will be +available soon. -The following is a tentative schedule for the conference. Times and other -details will be filled in as we get closer to the event. +| **Day** | **Time** | **Event** | **Room(s)** | +|-------------------|---------------|----------------------------------------------------------|---------------------| +| Monday, Jun 24 | 8:30 - 8:45 | Open and welcome | BCD | +| | 8:45 - 9:45 | Keynote by Jana Klánová | BCD | +| | 9:45 - 10:10 | Morning break | Atrium | +| | 10:10 - 12:00 | Talks (single track) | BCD | +| | 12:00 - 13:00 | Lunch | Restaurant Lucullus | +| | 13:00 - 14:00 | Trainings I | B, C, D, M1, M2 | +| | 14:00 - 16:00 | Posters + coffee | BCD | +| | 16:00 - 18:00 | Trainings II | B, C, D, M1, M2 | +| | 18:00 - 19:00 | BoFs | B, C, D, M1, M2 | +| | | | | +| Tuesday, Jun 25 | 8:30 - 8:45 | Overview of activities on Wednesday afternoon | BCD | +| | 8:45 - 9:45 | Keynote by Ute Gunsenheimer | BCD | +| | 9:45 - 10:10 | Morning break | Atrium | +| | 10:10 - 12:00 | Talks (2 tracks) | BC, | +| | 12:00 - 13:00 | Lunch | Restaurant Lucullus | +| | 13:00 - 14:00 | Trainings I | B, C, D, M1, M2 | +| | 14:00 - 16:00 | Posters + coffee | BCD | +| | 16:00 - 18:00 | Trainings II | B, C, D, M1, M2 | +| | 18:00 - 19:00 | BoFs? | B, C, D, M1, M2 | +| | 19:00 - 22:00 | Conference dinner | TBD | +| | | | | +| Wednesday, Jun 26 | 8:30 - 9:45 | Community update talk | BCD | +| | 8:45 - 10:10 | Morning break | Atrium | +| | 10:10 - 10:30 | Gold sponsor talk: JXTX Foundation | BCD | +| | 10:30 - 12:00 | Panel discussion | BCD | +| | 12:00 - 13:00 | Lunch | Box lunch | +| | 13:00 - ... | Tour of Villa Tugendhat. Walking tour of Brno. Fun BoFs. | TBD | +| | | | | +| Thursday, Jun 27 | 8:30 - 8:45 | Feedback session | BCD | +| | 8:45 - 9:45 | Keynote by Daria Onichtchouk | BCD | +| | 9:45 - 10:10 | Morning break | Atrium | +| | 10:10 - 12:00 | Talks (2 tracks) | BC, D | +| | 12:00 - 13:00 | Lunch | Restaurant Lucullus | +| | 13:00 - 14:00 | Trainings I | B, C, D, M1, M2 | +| | 14:00 - 14:30 | Afternoon break | Atrium | +| | 14:30 - 16:30 | Trainings II | B, C, D, M1, M2 | +| | 16:30 - 17:30 | Talks (single track) & conference closing | BCD | +| | 17:30 - 19:00 | BoFs | B, C, D, M1, M2 | +| | | | | -| **Day** | **Event** | -|-------------------|----------------------------------------------------------| -| Monday, Jun 24 | Open and welcome | -| | Keynote by Jana Klánová | -| | Morning break | -| | Talks (up to 2 tracks) | -| | Lunch | -| | Trainings I | -| | Posters + coffee | -| | Trainings II | -| | BoFs | -| | | -| Tuesday, Jun 25 | Acknowledge fellowship recipients | -| | Keynote by Ute Gunsenheimer | -| | Morning break | -| | Talks (up to 2 tracks) | -| | Lunch | -| | Trainings I | -| | Posters + coffee | -| | Trainings II | -| | BoFs? | -| | Conference dinner | -| | | -| Wednesday, Jun 26 | Community talk | -| | Morning break | -| | Sponsor talk | -| | Panel discussion | -| | Lunch | -| | Tour of Villa Tugendhat. Walking tour of Brno. Fun BoFs. | -| | | -| Thursday, Jun 27 | Feedback session | -| | Keynote by Daria Onichtchouk | -| | Morning break | -| | Talks (up to 2 tracks) | -| | Lunch | -| | Trainings I | -| | Posters + coffee | -| | Trainings II | -| | BoFs | +# Talks + +| **Monday** | **Single track** | | +|---------------|----------------------------------------------------------------------------------------------------------------------------------------------------|-------------------------------------------------------------------------------------------------------------------------------| +| 10:10 - 12:00 | BioDigs: a GDSCN Project | | +| | Galaxy activities in Czech Republic | | +| | Galaxy-ML2: Simple, Powerful, and Robust Machine Learning Tools for Galaxy | | +| | Community Lightning Talks: SPOC, GGA, SSA, Imaging, & GCB | | +| | Empowering Users to Bring Their Own Storage | | +| | A Galaxy Workflow Developer's Companion in your Browser | | +| | Driving Decisions with Data: Introducing the Key Usage Indicators (KUI) for Galaxy Project Governance | | +| | The AquaINFRA platform: A research data infrastructure for marine and inland waters | | +| | Developing Interactive Neutron Science Applications using Galaxy | | +| | ABRomics: a Galaxy-based One Health Antimicrobial Resistance Platform | | +| | | | +| **Tuesday** | **Analysis track** | **Enablement track: workflows & administration** | +| 10:10 - 12:00 | Genomics and transcriptomics of Fusarium musae from human and banana | Visualizing Workflow Runs in Galaxy: The Graph View for Workflow Invocations | +| | MAdLand computational resources through Galaxy | Upgrading User Experience: Introducing the New Galaxy UI | +| | Genomic and evolutionary analysis of the cytochrome P450 gene family in a ground -herb of Amazonian riparian forests with a waterflooding gradient | Enhanced Workflow Management in Galaxy | +| | The Galaxy Platform: Applications to Catalysis Workflows | Maintaining and improving a large collection of workflows | +| | A Toolset for Building and Simulating Transmembrane Proteins in Galaxy | PathoGFAIR: FAIR Workflows for Pathogen Detection & Samples Comparison | +| | Ab-initio Semi-Empirical Mass Spectra Predictions with Galaxy | Data access architecture at "Galactic" scale: what's new and what's next | +| | Bridging the Gap: A Systematic Workflow to Convert Low-Resolution GC-MS Libraries to High-Resolution in Silico for Enhanced Chemical Profiling | Interactivity as a tool power-up – Interactive Client Tools reimplemented in the frontend | +| | Automated Reference Genome Assembly in Galaxy - An Update | TES job submission and streamlined data transfers | +| | Long-read genomes from diverse outbred dogs | Metascheduling with TPV: Weighting jobs on multiple constraints for distributed deployment over local and remote resources | +| | Using Galaxy and Integrated Genome Browser to study tardigrade biology | Integrating OGC API services into Galaxy | +| | | | +| **Thursday** | **Analysis track** | **Enablement track: outreach & automation** | +| 10:10 - 12:00 | Navigating the variant landscape: integrating MAVE data analysis into Galaxy | Updates from the Global Galaxy Training Network (GTN) | +| | A Galaxy-based immunopeptidogenomic pipeline for neoantigen discovery | Communication Strategies and Community Engagement in the Galaxy Project: Exploring Current Practices and Future Opportunities | +| | Clinical metaproteomics workflow to study host-microbiome dynamics | Addressing user needs in single-cell analysis; internship and obstacles | +| | MitoLink2.0: A generic integrated web-based workflow system to evaluate genotype-phenotype correlations in human mitochondrial diseases | Galaxy as a Gateway to Bioinformatics: an updated scRNA-seq analysis training suite | +| | Persist-seq: a set of reproducible single cell RNA-seq analysis pipelines for understanding early persister cells in cancer. | Image Analysis in Galaxy: Recent Developments and Highlights | +| | Viral pathogen data analysis with Galaxy | DevOps techniques for developing and integrating tools in Galaxy | +| | FAIR viral quasispecies reconstruction from short reads - possibilities and limitations | Galaxy CoDex for finding tools, workflows, and training | +| | BREW3R - a workflow to get more reads in genes in 3'-end sequencing methods | Community-driven standards development for reference genome generation | +| | Reconstructing cell type specification trajectories in the last common animal ancestor | UseGalaxy France: an example of a national UseGalaxy server | +| | Structural annotation of repeated regions in the Psidium guajava L. genome and development of molecular markers for regulatory regions | "Smarter" job scheduling using user provided infrastructure | +| | | | +| 16:30 - 17:15 | **Single track** | | +| | Pairing Data Analysis Methods with Sequencing Products to Meet Scientist’s Needs. What Do People Want? | | +| | Astronomy in Galaxy | | +| | Estimating Cloud Computing Costs when Running Bioinformatics Workloads | | +| | Community-Building Initiatives in Bioconductor | | ## Social Programme ### Conference Dinner