From 09ba3d4a892f53c9aea283fdf83a2f8c4ac52993 Mon Sep 17 00:00:00 2001 From: Dannon Baker Date: Wed, 20 Nov 2024 17:36:33 -0500 Subject: [PATCH] Apply yml formatting --- content/0examples/navbar.yml | 46 +++---- content/belgium/navbar.yml | 108 ++++++++-------- content/elixir-it/navbar.yml | 106 ++++++++-------- content/erasmusmc/navbar.yml | 126 +++++++++---------- content/eu/navbar.yml | 134 ++++++++++---------- content/freiburg/navbar.yml | 112 ++++++++--------- content/genouest/navbar.yml | 136 ++++++++++----------- content/home/callouts.yml | 26 ++-- content/home/education.yml | 78 ++++++------ content/home/research.yml | 79 ++++++------ content/ifb/navbar.yml | 122 +++++++++---------- content/pasteur/navbar.yml | 126 +++++++++---------- content/projects/esg/expected_results.yml | 16 +-- content/projects/esg/external_links.yml | 18 +-- content/projects/esg/objectives.yml | 16 +-- content/projects/esg/partners.yml | 142 +++++++++++----------- content/projects/esg/work_packages.yml | 24 ++-- content/us/navbar.yml | 14 +-- 18 files changed, 714 insertions(+), 715 deletions(-) diff --git a/content/0examples/navbar.yml b/content/0examples/navbar.yml index 436649d782..897fdf4d4f 100644 --- a/content/0examples/navbar.yml +++ b/content/0examples/navbar.yml @@ -1,25 +1,25 @@ left: -- label: News - relativeTo: subsite - target: news/ -- label: Tools - target: https://usegalaxy-eu.github.io/tools -- label: Example Dropdown - contents: - - label: Local link - target: /faq/ - - label: External link - target: https://usegalaxy.org + - label: News + relativeTo: subsite + target: news/ + - label: Tools + target: https://usegalaxy-eu.github.io/tools + - label: Example Dropdown + contents: + - label: Local link + target: /faq/ + - label: External link + target: https://usegalaxy.org right: -- label: FAQ - target: /support/ -- label: People - target: https://usegalaxy-eu.github.io/people -- label: Help - contents: - - label: Get started - target: /get-started/ - - label: Training - target: /learn/ - - label: Galaxy Help Forum - target: https://help.galaxyproject.org + - label: FAQ + target: /support/ + - label: People + target: https://usegalaxy-eu.github.io/people + - label: Help + contents: + - label: Get started + target: /get-started/ + - label: Training + target: /learn/ + - label: Galaxy Help Forum + target: https://help.galaxyproject.org diff --git a/content/belgium/navbar.yml b/content/belgium/navbar.yml index 3f98bc91c7..19751c9f38 100644 --- a/content/belgium/navbar.yml +++ b/content/belgium/navbar.yml @@ -1,57 +1,57 @@ left: right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Galaxy publications - target: "/publication-library/" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Galaxy publications + target: "/publication-library/" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/elixir-it/navbar.yml b/content/elixir-it/navbar.yml index fe9c8367ce..b1a4c92a13 100644 --- a/content/elixir-it/navbar.yml +++ b/content/elixir-it/navbar.yml @@ -1,56 +1,56 @@ style: - color: "#2c81bb" + color: "#2c81bb" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/elixir-it/people + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/elixir-it/people right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Publications - target: https://usegalaxy-eu.github.io/elixir-it/publications - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Publications + target: https://usegalaxy-eu.github.io/elixir-it/publications + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/erasmusmc/navbar.yml b/content/erasmusmc/navbar.yml index ccb61e5168..b52e72949d 100644 --- a/content/erasmusmc/navbar.yml +++ b/content/erasmusmc/navbar.yml @@ -1,66 +1,66 @@ style: - color: "#f17925" + color: "#f17925" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/erasmusmc/people + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/erasmusmc/people right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Publications - target: https://usegalaxy-eu.github.io/erasmusmc/publications - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Publications + target: https://usegalaxy-eu.github.io/erasmusmc/publications + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/eu/navbar.yml b/content/eu/navbar.yml index 171d89bdc9..34173ca754 100644 --- a/content/eu/navbar.yml +++ b/content/eu/navbar.yml @@ -1,70 +1,70 @@ style: - color: "#203e5f" + color: "#203e5f" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/people -- label: Tools - target: https://usegalaxy-eu.github.io/tools + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/people + - label: Tools + target: https://usegalaxy-eu.github.io/tools right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: The European Server - target: https://usegalaxy-eu.github.io/about - - label: Publications - target: https://usegalaxy-eu.github.io/citations - - label: Citing Galaxy - target: https://usegalaxy-eu.github.io/about#acknowledgement - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: The European Server + target: https://usegalaxy-eu.github.io/about + - label: Publications + target: https://usegalaxy-eu.github.io/citations + - label: Citing Galaxy + target: https://usegalaxy-eu.github.io/about#acknowledgement + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/freiburg/navbar.yml b/content/freiburg/navbar.yml index 41f9bc35ae..5c662987ad 100644 --- a/content/freiburg/navbar.yml +++ b/content/freiburg/navbar.yml @@ -1,58 +1,58 @@ left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/freiburg/people -- label: Projects - target: https://usegalaxy-eu.github.io/freiburg/projects -- label: Services - target: https://usegalaxy-eu.github.io/freiburg/services + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/freiburg/people + - label: Projects + target: https://usegalaxy-eu.github.io/freiburg/projects + - label: Services + target: https://usegalaxy-eu.github.io/freiburg/services right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Jobs - target: https://usegalaxy-eu.github.io/freiburg/jobs - - label: Publications - target: https://usegalaxy-eu.github.io/freiburg/publications - - label: Citing Galaxy - target: https://usegalaxy-eu.github.io/about#acknowledgement - - label: Platforms - target: "/use/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Branding - target: "/images/galaxy-logos/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Jobs + target: https://usegalaxy-eu.github.io/freiburg/jobs + - label: Publications + target: https://usegalaxy-eu.github.io/freiburg/publications + - label: Citing Galaxy + target: https://usegalaxy-eu.github.io/about#acknowledgement + - label: Platforms + target: "/use/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Branding + target: "/images/galaxy-logos/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/genouest/navbar.yml b/content/genouest/navbar.yml index d9b9693889..8bcf4500c9 100644 --- a/content/genouest/navbar.yml +++ b/content/genouest/navbar.yml @@ -1,71 +1,71 @@ style: - color: white - lightBg: true + color: white + lightBg: true left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/genouest/people -- label: Tools - target: https://usegalaxy-eu.github.io/tools + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/genouest/people + - label: Tools + target: https://usegalaxy-eu.github.io/tools right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: The European Server - target: https://usegalaxy-eu.github.io/about - - label: Publications - target: https://usegalaxy-eu.github.io/citations - - label: Citing Galaxy - target: https://usegalaxy-eu.github.io/about#acknowledgement - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: The European Server + target: https://usegalaxy-eu.github.io/about + - label: Publications + target: https://usegalaxy-eu.github.io/citations + - label: Citing Galaxy + target: https://usegalaxy-eu.github.io/about#acknowledgement + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/home/callouts.yml b/content/home/callouts.yml index fe8df6683f..bbd0620215 100644 --- a/content/home/callouts.yml +++ b/content/home/callouts.yml @@ -1,26 +1,26 @@ heading: "Galaxy is more than you think" callout1: - title: Galaxy is a world-wide community. - content: There are over 500,000 registered Galaxy users from all over the world. Join this lively community to get help, contribute, and learn.
Explore the community
- url: /community/ + title: Galaxy is a world-wide community. + content: There are over 500,000 registered Galaxy users from all over the world. Join this lively community to get help, contribute, and learn.
Explore the community
+ url: /community/ callout2: - title: Galaxy has 1,000s of tools - content: In partnership with BioConda and BioContainers, Galaxy provides instant access to vast number of analysis tools.
Browse available tools
+ title: Galaxy has 1,000s of tools + content: In partnership with BioConda and BioContainers, Galaxy provides instant access to vast number of analysis tools.
Browse available tools
callout3: - title: Galaxy = workflows - content: Create complex workflows and deploy via UI or CLI. + title: Galaxy = workflows + content: Create complex workflows and deploy via UI or CLI. callout4: - title: Galaxy is everything you need to leverage HPC and Clouds - content: Distribute different types of computational jobs across any infrastructure using Pulsar and TPV. + title: Galaxy is everything you need to leverage HPC and Clouds + content: Distribute different types of computational jobs across any infrastructure using Pulsar and TPV. callout5: - title: Rapidly put your tools before 1,000s of users - content: Planemo, Galaxy's SDK, automates creation, testing, and deployment of tools, workflows, and interactive tutorials. + title: Rapidly put your tools before 1,000s of users + content: Planemo, Galaxy's SDK, automates creation, testing, and deployment of tools, workflows, and interactive tutorials. callout6: - title: Galaxy makes learning accessible - content: Galaxy Training Network has 100s of community-vetted, hands-on tutorials on a variety of topics. + title: Galaxy makes learning accessible + content: Galaxy Training Network has 100s of community-vetted, hands-on tutorials on a variety of topics. diff --git a/content/home/education.yml b/content/home/education.yml index 01a4378bc5..7a23e9a21e 100644 --- a/content/home/education.yml +++ b/content/home/education.yml @@ -3,42 +3,42 @@ heading: Learn content: From curated tools and workflows to self-paced tutorials available on the Galaxy Training Network (GTN), there are plenty of materials to learn from. education: -- title: Tutorials - content: Access topic-based trainings for free. - icon: fas fa-graduation-cap - url: https://training.galaxyproject.org - -- title: Videos - content: Watch to learn, including conferences. - icon: far fa-play-circle - url: https://www.youtube.com/channel/UCwoMMZPbz1L9AZzvIvrvqYA - -- title: Vetted workflows - content: (Re)use or adapt quality workflows. - icon: fas fa-sitemap - url: https://training.galaxyproject.org/training-material/workflows/list - -- title: Blog - content: Read highlights from the experts. - icon: fas fa-comment - url: /blog/ - -- title: Data - content: Pull data from popular repositories. - icon: fas fa-database - url: https://training.galaxyproject.org/training-material/topics/admin/tutorials/data-library/tutorial.html - -- title: Community - content: Explore the world-wide community. - icon: fas fa-user-friends - url: https://galaxyproject.org/community/ - -- title: FAQ - content: Common questions. Good answers. - icon: far fa-question-circle - url: https://training.galaxyproject.org/training-material/faqs/index.html - -- title: Help & support - content: Advice is always available. - icon: fas fa-hands-helping - url: https://help.galaxyproject.org/ + - title: Tutorials + content: Access topic-based trainings for free. + icon: fas fa-graduation-cap + url: https://training.galaxyproject.org + + - title: Videos + content: Watch to learn, including conferences. + icon: far fa-play-circle + url: https://www.youtube.com/channel/UCwoMMZPbz1L9AZzvIvrvqYA + + - title: Vetted workflows + content: (Re)use or adapt quality workflows. + icon: fas fa-sitemap + url: https://training.galaxyproject.org/training-material/workflows/list + + - title: Blog + content: Read highlights from the experts. + icon: fas fa-comment + url: /blog/ + + - title: Data + content: Pull data from popular repositories. + icon: fas fa-database + url: https://training.galaxyproject.org/training-material/topics/admin/tutorials/data-library/tutorial.html + + - title: Community + content: Explore the world-wide community. + icon: fas fa-user-friends + url: https://galaxyproject.org/community/ + + - title: FAQ + content: Common questions. Good answers. + icon: far fa-question-circle + url: https://training.galaxyproject.org/training-material/faqs/index.html + + - title: Help & support + content: Advice is always available. + icon: fas fa-hands-helping + url: https://help.galaxyproject.org/ diff --git a/content/home/research.yml b/content/home/research.yml index 2657a5ca4f..42680771a6 100644 --- a/content/home/research.yml +++ b/content/home/research.yml @@ -1,50 +1,49 @@ heading: Galactic pulse research1: - title: Recent publications - content: "Galaxy can be installed locally, fine-tuned with a tailored toolset and no usage quotas." - url: "https://www.zotero.org/groups/1732893/galaxy" - links: - - title: "Hakimzadeh, Ali, et al. \"A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses.\" Molecular Ecology Resources (2023)." - url: "https://doi.org/10.1111/1755-0998.13847" - - title: "Senft, Rebecca A., et al. \"A biologist’s guide to planning and performing quantitative bioimaging experiments.\" PLoS Biology 21.6 (2023): e3002167." - url: "https://doi.org/10.1371/journal.pbio.3002167" - - title: "Banh, Dalton V., et al. \"Bacterial cGAS senses a viral RNA to initiate immunity.\" Nature (2023): 1-8." - url: "https://doi.org/10.1038/s41586-023-06743-9" - - title: "Sokol-Borrelli, Sarah L., et al. \"A transcriptional network required for bradyzoite development in Toxoplasma gondii is dispensable for recrudescent disease.\" Nature Communications 14.1 (2023): 6078." - url: "https://doi.org/10.1016/j.envint.2022.107531" + title: Recent publications + content: "Galaxy can be installed locally, fine-tuned with a tailored toolset and no usage quotas." + url: "https://www.zotero.org/groups/1732893/galaxy" + links: + - title: 'Hakimzadeh, Ali, et al. "A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses." Molecular Ecology Resources (2023).' + url: "https://doi.org/10.1111/1755-0998.13847" + - title: 'Senft, Rebecca A., et al. "A biologist’s guide to planning and performing quantitative bioimaging experiments." PLoS Biology 21.6 (2023): e3002167.' + url: "https://doi.org/10.1371/journal.pbio.3002167" + - title: 'Banh, Dalton V., et al. "Bacterial cGAS senses a viral RNA to initiate immunity." Nature (2023): 1-8.' + url: "https://doi.org/10.1038/s41586-023-06743-9" + - title: 'Sokol-Borrelli, Sarah L., et al. "A transcriptional network required for bradyzoite development in Toxoplasma gondii is dispensable for recrudescent disease." Nature Communications 14.1 (2023): 6078.' + url: "https://doi.org/10.1016/j.envint.2022.107531" research3: - title: Popular tutorials - url: "https://training.galaxyproject.org" - content: "Choose from these self-paced tutorials to perform a comprehensive analysis or hone your skills on a specific topic." - button: - title: View all tutorials + title: Popular tutorials url: "https://training.galaxyproject.org" - links: - - title: "Visualization of RNA-Seq results with Volcano Plot" - url: "https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html" - - title: "Reference-based RNA-Seq data analysis" - url: "https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html" - - title: Quality Control - url: "https://training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial.html" - + content: "Choose from these self-paced tutorials to perform a comprehensive analysis or hone your skills on a specific topic." + button: + title: View all tutorials + url: "https://training.galaxyproject.org" + links: + - title: "Visualization of RNA-Seq results with Volcano Plot" + url: "https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html" + - title: "Reference-based RNA-Seq data analysis" + url: "https://training.galaxyproject.org/training-material/topics/transcriptomics/tutorials/ref-based/tutorial.html" + - title: Quality Control + url: "https://training.galaxyproject.org/training-material/topics/sequence-analysis/tutorials/quality-control/tutorial.html" research5: - title: "Research highlights" - content: "See how Galaxy cooperates and helps other projects. These are also great exemplars of how Galaxy is being used in production settings." + title: "Research highlights" + content: "See how Galaxy cooperates and helps other projects. These are also great exemplars of how Galaxy is being used in production settings." research6: - logos: - - title: VGP logo - url: /projects/vgp/ - image: /images/vgp/vgp-logo-light.png - width: "100%" - - title: microGalaxy logo - url: /projects/covid19/ - image: /images/logos/gxy-covid.png - width: "95%" - - title: MPXV logo - url: /projects/mpxv/ - image: /images/mpxv/mpxv_logo.png - width: "50%" + logos: + - title: VGP logo + url: /projects/vgp/ + image: /images/vgp/vgp-logo-light.png + width: "100%" + - title: microGalaxy logo + url: /projects/covid19/ + image: /images/logos/gxy-covid.png + width: "95%" + - title: MPXV logo + url: /projects/mpxv/ + image: /images/mpxv/mpxv_logo.png + width: "50%" diff --git a/content/ifb/navbar.yml b/content/ifb/navbar.yml index 857298a8e0..e067e78383 100644 --- a/content/ifb/navbar.yml +++ b/content/ifb/navbar.yml @@ -1,64 +1,64 @@ style: - color: white - lightBg: true + color: white + lightBg: true left: -- label: News - relativeTo: subsite - target: news/ -- label: People - target: https://usegalaxy-eu.github.io/ifb/people + - label: News + relativeTo: subsite + target: news/ + - label: People + target: https://usegalaxy-eu.github.io/ifb/people right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Galaxy publications - target: "/publication-library/" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Galaxy publications + target: "/publication-library/" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/pasteur/navbar.yml b/content/pasteur/navbar.yml index e14ac8e4bd..c92cd97867 100644 --- a/content/pasteur/navbar.yml +++ b/content/pasteur/navbar.yml @@ -1,66 +1,66 @@ style: - color: "#7591be" + color: "#7591be" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ -- label: People - target: https://usegalaxy-eu.github.io/pasteur/people + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/ + - label: People + target: https://usegalaxy-eu.github.io/pasteur/people right: -- label: Help - contents: - - label: Get started - target: "/get-started/" - - label: Training - target: "/learn/" - - label: FAQ - target: "/support/" - - label: Galaxy Help Forum - target: https://help.galaxyproject.org/ -- label: Community - contents: - - label: The Galaxy Community - target: "/community/" - - label: Blog - target: "/blog/" - - label: Working Groups - target: "/community/wg/" - - label: Governance - target: "/community/governance/" - - label: How to contribute - target: "/community/contributing/" - - label: Galaxy Mentor Network - target: https://galaxy-mentor-network.netlify.app/ - - label: Code of Conduct - target: "/community/coc/" -- label: About - contents: - - label: Publications - target: https://usegalaxy-eu.github.io/pasteur/publications - - label: Platforms - target: "/use/" - - label: Careers - target: "/careers/" - - label: Stats - target: "/galaxy-project/statistics/" - - label: Mailing lists - target: "/mailing-lists" - - label: Citing Galaxy - target: "/citing-galaxy/" - - label: Branding - target: "/images/galaxy-logos/" -- label: Projects - contents: - - label: COVID-19 - target: "/projects/covid19/" - - label: Monkeypox - target: "/projects/mpxv/" - - label: VGP - target: "/projects/vgp/" - - label: BRC Analytics - target: "https://brc-analytics.org/" -- label: "@jxtx" - target: https://jxtxfoundation.org/ + - label: Help + contents: + - label: Get started + target: "/get-started/" + - label: Training + target: "/learn/" + - label: FAQ + target: "/support/" + - label: Galaxy Help Forum + target: https://help.galaxyproject.org/ + - label: Community + contents: + - label: The Galaxy Community + target: "/community/" + - label: Blog + target: "/blog/" + - label: Working Groups + target: "/community/wg/" + - label: Governance + target: "/community/governance/" + - label: How to contribute + target: "/community/contributing/" + - label: Galaxy Mentor Network + target: https://galaxy-mentor-network.netlify.app/ + - label: Code of Conduct + target: "/community/coc/" + - label: About + contents: + - label: Publications + target: https://usegalaxy-eu.github.io/pasteur/publications + - label: Platforms + target: "/use/" + - label: Careers + target: "/careers/" + - label: Stats + target: "/galaxy-project/statistics/" + - label: Mailing lists + target: "/mailing-lists" + - label: Citing Galaxy + target: "/citing-galaxy/" + - label: Branding + target: "/images/galaxy-logos/" + - label: Projects + contents: + - label: COVID-19 + target: "/projects/covid19/" + - label: Monkeypox + target: "/projects/mpxv/" + - label: VGP + target: "/projects/vgp/" + - label: BRC Analytics + target: "https://brc-analytics.org/" + - label: "@jxtx" + target: https://jxtxfoundation.org/ diff --git a/content/projects/esg/expected_results.yml b/content/projects/esg/expected_results.yml index 34503b4914..6e6cb062e5 100644 --- a/content/projects/esg/expected_results.yml +++ b/content/projects/esg/expected_results.yml @@ -1,14 +1,14 @@ heading: Expected Results expected_results: -- title: Pulsar Network - content: A mature and tested (TRL-9) distributed compute network with demonstrated usage across at least 12 European partners. + - title: Pulsar Network + content: A mature and tested (TRL-9) distributed compute network with demonstrated usage across at least 12 European partners. -- title: ScienceGateways - content: 6 national Galaxy instances operational and proven by the scientific community with more than 100,000 users. + - title: ScienceGateways + content: 6 national Galaxy instances operational and proven by the scientific community with more than 100,000 users. -- title: Communities - content: Science Gateway with a custom set of tools and workflows for the Biodiversity/Climate, Materials Science and Astrophysics community. + - title: Communities + content: Science Gateway with a custom set of tools and workflows for the Biodiversity/Climate, Materials Science and Astrophysics community. -- title: FAIR data - content: EOSC-catalogued FAIR data and workflows that can be found, consumed, created and published by users of the EuroScienceGateway, demonstrated for each of the 3 domain-specific use-cases. + - title: FAIR data + content: EOSC-catalogued FAIR data and workflows that can be found, consumed, created and published by users of the EuroScienceGateway, demonstrated for each of the 3 domain-specific use-cases. diff --git a/content/projects/esg/external_links.yml b/content/projects/esg/external_links.yml index c9b842ff36..cf1bd179dc 100644 --- a/content/projects/esg/external_links.yml +++ b/content/projects/esg/external_links.yml @@ -1,12 +1,12 @@ heading: Projects Part of ESG external_links: -- name: Galaxy Training Network - image: ./link-images/GTNLogoTrans300.png - url: https://training.galaxyproject.org/ -- name: Pulsar - image: ./link-images/pulsar_transparent.png - url: https://pulsar-network.readthedocs.io/ -- name: Galaxy EU - image: ./link-images/useGalaxy.eu.256.png - url: https://usegalaxy.eu/ + - name: Galaxy Training Network + image: ./link-images/GTNLogoTrans300.png + url: https://training.galaxyproject.org/ + - name: Pulsar + image: ./link-images/pulsar_transparent.png + url: https://pulsar-network.readthedocs.io/ + - name: Galaxy EU + image: ./link-images/useGalaxy.eu.256.png + url: https://usegalaxy.eu/ diff --git a/content/projects/esg/objectives.yml b/content/projects/esg/objectives.yml index 21490fcd23..4ae1d74add 100644 --- a/content/projects/esg/objectives.yml +++ b/content/projects/esg/objectives.yml @@ -1,14 +1,14 @@ heading: Objectives objectives: -- title: Objective 1 - content: Accessible e-Infrastructure resources for European scientists to enable pioneering data-driven research across scientific domains. + - title: Objective 1 + content: Accessible e-Infrastructure resources for European scientists to enable pioneering data-driven research across scientific domains. -- title: Objective 2 - content: Support the varieties of analysis types and diverse usage patterns through efficient and smart job distribution to appropriate and sustainable infrastructures. + - title: Objective 2 + content: Support the varieties of analysis types and diverse usage patterns through efficient and smart job distribution to appropriate and sustainable infrastructures. -- title: Objective 3 - content: The application of FAIR principles to workflows and adoption of FAIR Digital Objects to stimulate reusable and reproducible research and enable the EOSC Interoperability Framework. + - title: Objective 3 + content: The application of FAIR principles to workflows and adoption of FAIR Digital Objects to stimulate reusable and reproducible research and enable the EOSC Interoperability Framework. -- title: Objective 4 - content: Adoption of the EuroScienceGateway by researchers in diverse scientific disciplines. + - title: Objective 4 + content: Adoption of the EuroScienceGateway by researchers in diverse scientific disciplines. diff --git a/content/projects/esg/partners.yml b/content/projects/esg/partners.yml index fc6e609b77..e22a877b14 100644 --- a/content/projects/esg/partners.yml +++ b/content/projects/esg/partners.yml @@ -1,72 +1,72 @@ partners: -- name: VIB - image: ./partner-logos/VIB.svg - website: https://vib.be/ - -- name: The University of Manchester - image: ./partner-logos/UNIMAN.svg - website: https://www.manchester.ac.uk/ - -- name: University Paris - image: ./partner-logos/UNIVERSITY PARIS.png - website: https://u-paris.fr/ - -- name: Universita Degli Studi Frienze - image: ./partner-logos/UNIFI.png - website: https://www.bio.unifi.it/ - -- name: UK Research and Innovation - image: ./partner-logos/UKRI_STF_Council-Logo_Horiz-RGB.png - website: https://www.ukri.org/ - -- name: Universitat de Barcelona - image: ./partner-logos/UB LOGO.png - website: https://www.ub.edu/ - -- name: TÜBİTAK - image: ./partner-logos/TÜBİTAK ULAKBİM Logo.svg - website: https://www.tubitak.gov.tr/ - -- name: University of Oslo - image: ./partner-logos/University_of_Oslo_seal.svg.png - website: https://www.uio.no/ - -- name: AGH University of Science and Technology - image: ./partner-logos/uni_agh-1.png - website: https://www.agh.edu.pl/ - -- name: Istituto Nazionale di Fisica Nucleare - image: ./partner-logos/INFN.jpg - website: https://home.infn.it/ - -- name: EPFL - image: ./partner-logos/epfl-logo-new.svg - website: https://www.epfl.ch/ - -- name: cnrs - image: ./partner-logos/CNRS.svg.png - website: https://www.cnrs.fr/ - -- name: Consiglio Nazionale delle Ricerche - image: ./partner-logos/CNR.png - website: https://www.cnr.it/ - -- name: cesnet - image: ./partner-logos/CESNET LOGO.png - website: https://www.cesnet.cz/ - -- name: Barcelona Supercomputing Center - image: ./partner-logos/BSC-logo-paths.svg - website: https://www.bsc.es/ - -- name: Institute of Informatics - SAS - image: ./partner-logos/uisav_logo_en.png - website: https://www.sav.sk/?doc=ins-org-ins&institute_no=60 - -- name: Advanced computing for research - image: ./partner-logos/EGI_Logo_RGB.svg - website: https://www.egi.eu/ - -- name: ACK Cyfronet AGH - image: ./partner-logos/CyfronetLogo.png - website: https://www.cyfronet.pl/ + - name: VIB + image: ./partner-logos/VIB.svg + website: https://vib.be/ + + - name: The University of Manchester + image: ./partner-logos/UNIMAN.svg + website: https://www.manchester.ac.uk/ + + - name: University Paris + image: ./partner-logos/UNIVERSITY PARIS.png + website: https://u-paris.fr/ + + - name: Universita Degli Studi Frienze + image: ./partner-logos/UNIFI.png + website: https://www.bio.unifi.it/ + + - name: UK Research and Innovation + image: ./partner-logos/UKRI_STF_Council-Logo_Horiz-RGB.png + website: https://www.ukri.org/ + + - name: Universitat de Barcelona + image: ./partner-logos/UB LOGO.png + website: https://www.ub.edu/ + + - name: TÜBİTAK + image: ./partner-logos/TÜBİTAK ULAKBİM Logo.svg + website: https://www.tubitak.gov.tr/ + + - name: University of Oslo + image: ./partner-logos/University_of_Oslo_seal.svg.png + website: https://www.uio.no/ + + - name: AGH University of Science and Technology + image: ./partner-logos/uni_agh-1.png + website: https://www.agh.edu.pl/ + + - name: Istituto Nazionale di Fisica Nucleare + image: ./partner-logos/INFN.jpg + website: https://home.infn.it/ + + - name: EPFL + image: ./partner-logos/epfl-logo-new.svg + website: https://www.epfl.ch/ + + - name: cnrs + image: ./partner-logos/CNRS.svg.png + website: https://www.cnrs.fr/ + + - name: Consiglio Nazionale delle Ricerche + image: ./partner-logos/CNR.png + website: https://www.cnr.it/ + + - name: cesnet + image: ./partner-logos/CESNET LOGO.png + website: https://www.cesnet.cz/ + + - name: Barcelona Supercomputing Center + image: ./partner-logos/BSC-logo-paths.svg + website: https://www.bsc.es/ + + - name: Institute of Informatics - SAS + image: ./partner-logos/uisav_logo_en.png + website: https://www.sav.sk/?doc=ins-org-ins&institute_no=60 + + - name: Advanced computing for research + image: ./partner-logos/EGI_Logo_RGB.svg + website: https://www.egi.eu/ + + - name: ACK Cyfronet AGH + image: ./partner-logos/CyfronetLogo.png + website: https://www.cyfronet.pl/ diff --git a/content/projects/esg/work_packages.yml b/content/projects/esg/work_packages.yml index 392733161e..59a389b2a1 100644 --- a/content/projects/esg/work_packages.yml +++ b/content/projects/esg/work_packages.yml @@ -1,25 +1,25 @@ title: "Work Packages" summary: - title: "Work Packages" - content: "EuroScienceGateway is organized into multiple work packages, each with it's own focus." + title: "Work Packages" + content: "EuroScienceGateway is organized into multiple work packages, each with it's own focus." wp1: - title: "Work Package 1" - content: "Project Management, Coordination and Dissemination." + title: "Work Package 1" + content: "Project Management, Coordination and Dissemination." wp2: - title: "Work Package 2" - content: "Stimulate FAIR and reusable research." + title: "Work Package 2" + content: "Stimulate FAIR and reusable research." wp3: - title: "Work Package 3" - content: "Pulsar Network: Distributed heterogeneous compute." + title: "Work Package 3" + content: "Pulsar Network: Distributed heterogeneous compute." wp4: - title: "Work Package 4" - content: "Building blocks for a sustainable operating model." + title: "Work Package 4" + content: "Building blocks for a sustainable operating model." wp5: - title: "Work Package 5" - content: "Community engagement, adoption and onboarding." + title: "Work Package 5" + content: "Community engagement, adoption and onboarding." diff --git a/content/us/navbar.yml b/content/us/navbar.yml index 871267ef5f..34d4c6e79d 100644 --- a/content/us/navbar.yml +++ b/content/us/navbar.yml @@ -1,9 +1,9 @@ style: - color: "#4e7152" + color: "#4e7152" left: -- label: News - relativeTo: subsite - target: news/ -- label: Events - relativeTo: subsite - target: events/ + - label: News + relativeTo: subsite + target: news/ + - label: Events + relativeTo: subsite + target: events/