Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

phmmer has moved to https #10

Open
otienoanyango opened this issue Jan 19, 2018 · 0 comments
Open

phmmer has moved to https #10

otienoanyango opened this issue Jan 19, 2018 · 0 comments

Comments

@otienoanyango
Copy link

sequence search using phmmer fails I believe because phmmer has moved to https by default. The query returns
"error": {
"msg": "Server returned HTTP response code: 400 for URL: https://www.ebi.ac.uk/Tools/hmmer/search/phmmer",
"trace": "java.io.IOException: Server returned HTTP response code: 400 for URL: https://www.ebi.ac.uk/Tools/hmmer/search/phmmer\n\tat sun.net.www.protocol.http.HttpURLConnection.getInputStream0(HttpURLConnection.java:1876)\n\tat sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1474)\n\tat sun.net.www.protocol.https.HttpsURLConnectionImpl.getInputStream(HttpsURLConnectionImpl.java:254)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient$HttpConnection.getJson(PhmmerClient.java:67)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient$HttpConnection.access$4(PhmmerClient.java:66)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient.getResultsJson(PhmmerClient.java:34)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerClient.getResults(PhmmerClient.java:21)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerJob.runJob(PhmmerJob.java:23)\n\tat uk.co.flax.biosolr.pdbe.phmmer.PhmmerXJoinResultsFactory.getResults(PhmmerXJoinResultsFactory.java:70)\n\tat org.apache.solr.search.xjoin.XJoinSearchComponent.prepare(XJoinSearchComponent.java:115)\n\tat org.apache.solr.handler.component.SearchHandler.handleRequestBody(SearchHandler.java:268)\n\tat org.apache.solr.handler.RequestHandlerBase.handleRequest(RequestHandlerBase.java:152)\n\tat org.apache.solr.core.SolrCore.execute(SolrCore.java:2227)\n\tat org.apache.solr.servlet.HttpSolrCall.execute(HttpSolrCall.java:658)\n\tat org.apache.solr.servlet.HttpSolrCall.call(HttpSolrCall.java:464)\n\tat org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:303)\n\tat org.apache.solr.servlet.SolrDispatchFilter.doFilter(SolrDispatchFilter.java:254)\n\tat org.eclipse.jetty.servlet.ServletHandler$CachedChain.doFilter(ServletHandler.java:1691)\n\tat org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:582)\n\tat org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:143)\n\tat org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:548)\n\tat org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:226)\n\tat org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1180)\n\tat org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:512)\n\tat org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:185)\n\tat org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1112)\n\tat org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:141)\n\tat org.eclipse.jetty.server.handler.ContextHandlerCollection.handle(ContextHandlerCollection.java:213)\n\tat org.eclipse.jetty.server.handler.HandlerCollection.handle(HandlerCollection.java:119)\n\tat org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:134)\n\tat org.eclipse.jetty.server.Server.handle(Server.java:534)\n\tat org.eclipse.jetty.server.HttpChannel.handle(HttpChannel.java:320)\n\tat org.eclipse.jetty.server.HttpConnection.onFillable(HttpConnection.java:251)\n\tat org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:273)\n\tat org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:95)\n\tat org.eclipse.jetty.io.SelectChannelEndPoint$2.run(SelectChannelEndPoint.java:93)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.executeProduceConsume(ExecuteProduceConsume.java:303)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.produceConsume(ExecuteProduceConsume.java:148)\n\tat org.eclipse.jetty.util.thread.strategy.ExecuteProduceConsume.run(ExecuteProduceConsume.java:136)\n\tat org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:671)\n\tat org.eclipse.jetty.util.thread.QueuedThreadPool$2.run(QueuedThreadPool.java:589)\n\tat java.lang.Thread.run(Thread.java:748)\n",
"code": 500

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant