From 8755f1867de899dbf437b949fc3c13e3ef5079f4 Mon Sep 17 00:00:00 2001
From: Tanguy Pierre <tanguy.pierre97@gmail.com>
Date: Tue, 23 Apr 2024 15:27:19 +0200
Subject: [PATCH] test and report finalization

---
 .gitignore                                    |   7 +-
 .../{bibliography/biblioV0.bib => biblio.bib} |  12 ++
 project/illustrations/process.png             | Bin 0 -> 16046 bytes
 project/report/v0/report-benchmarkingV0.tex   |   3 +-
 project/report/v1/report-benchmarkingV1.tex   | 135 ++++++++++++++++++
 5 files changed, 152 insertions(+), 5 deletions(-)
 rename project/{bibliography/biblioV0.bib => biblio.bib} (68%)
 create mode 100644 project/illustrations/process.png
 create mode 100644 project/report/v1/report-benchmarkingV1.tex

diff --git a/.gitignore b/.gitignore
index 1ebee97e..2b1bf874 100644
--- a/.gitignore
+++ b/.gitignore
@@ -55,11 +55,12 @@ tramp
 .venv*
 
 
-# Latex compilation files
-project/presentation/*
+# Latex compilation folders
+project/presentation/v0/*
 !project/presentation/v0/slides-benchmarkingV0.tex
-project/report/*
+project/report/v0/*
 !project/report/v0/report-benchmarkingV0.tex
+project/report/v1/*
 !project/report/v1/report-benchmarkingV1.tex
 
 # ReFrame jobs
diff --git a/project/bibliography/biblioV0.bib b/project/biblio.bib
similarity index 68%
rename from project/bibliography/biblioV0.bib
rename to project/biblio.bib
index e9666f9d..f48c7323 100644
--- a/project/bibliography/biblioV0.bib
+++ b/project/biblio.bib
@@ -20,4 +20,16 @@ @misc{Antora
   author       = {Antora},
   howpublished = {\url{https://docs.antora.org/antora/latest/}},
   title        = {Documentation}
+}
+
+@misc{Jinja2,
+  author       = {Jinja2},
+  howpublished = {\url{https://palletsprojects.com/p/jinja/}},
+  title        = {Documentation}
+}
+
+@misc{Plotly,
+  author       = {Plotly},
+  howpublished = {\url{https://plotly.com/python/}},
+  title        = {Documentation},
 }
\ No newline at end of file
diff --git a/project/illustrations/process.png b/project/illustrations/process.png
new file mode 100644
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diff --git a/project/report/v0/report-benchmarkingV0.tex b/project/report/v0/report-benchmarkingV0.tex
index 4c022949..2828300e 100644
--- a/project/report/v0/report-benchmarkingV0.tex
+++ b/project/report/v0/report-benchmarkingV0.tex
@@ -9,7 +9,7 @@
 \usepackage{tocloft}
 \usepackage{xcolor}
 \usepackage{biblatex}
-\addbibresource{../../bibliography/biblioV0.bib}
+\addbibresource{../../biblio.bib}
 
 % formatting
 \renewcommand{\cftsecleader}{\cftdotfill{\cftdotsep}}   % points in table of contents
@@ -35,7 +35,6 @@
 
 \newpage
 \section{Introduction}
-
 This work is part of the \textit{ExaMA} project, whose main objective is to design algorithms and methods
 that will adapt in the best way to exascale machines and their imminent appearance.
 
diff --git a/project/report/v1/report-benchmarkingV1.tex b/project/report/v1/report-benchmarkingV1.tex
new file mode 100644
index 00000000..e92c4060
--- /dev/null
+++ b/project/report/v1/report-benchmarkingV1.tex
@@ -0,0 +1,135 @@
+\documentclass[12pt]{article}
+
+% packages
+\usepackage{a4wide}
+\usepackage[english]{babel}
+\usepackage{csquotes}
+\usepackage{hyperref}
+\usepackage{graphicx}
+\usepackage{tocloft}
+\usepackage{xcolor}
+\usepackage{biblatex}
+\addbibresource{../../biblio.bib}
+
+% formatting
+\renewcommand{\cftsecleader}{\cftdotfill{\cftdotsep}}   % points in table of contents
+\setlength{\parskip}{\baselineskip}                     % add space between paragraphs
+
+
+% attributes
+\title{\underline{\textbf{ExaMA WP3 -- Dashboard Performances}}}
+\author{Tanguy Pierre\\
+            [1cm]
+            Supervisors: V. Chabannes, J. Cladellas\\
+            [2cm]
+            University of Strasbourg}
+
+\date{23rd of April}
+
+
+
+% **********************  START  **********************
+\begin{document}
+    \maketitle      % titlepage to be improved
+
+
+\newpage
+\section{Introduction}
+
+This work is part of the \textit{ExaMA} project, whose main objective is to design algorithms and methods
+that will adapt in the best way to exascale machines and their imminent appearance.
+
+Benchmarking is an unavoidable step for \textit{ExaMA}, as it needs to analyse and compare performances on systems
+with different structures. These analyses will not only guide the developer team to improve the scalability of the different available tools,
+but also ensure complete transparency during the evaluation process.
+
+As launching tests on supercomputers isn't always easy because of their availability and costs, there is a real need to store the results.
+In addition to this fact, it serves as a manner to verify that new features haven't caused any pullback in performance.
+It is also important for this project to create a well-structured database for analyses depending on specific context, like machine or application.
+
+It is exactly what the \textit{Dashboard Performances} project is about: providing a clear and easy to use interface between tests and results.
+This interface is already available at \url{https://feelpp.github.io/benchmarking/benchmarking/index.html}.
+
+
+\section{Tools description}
+
+For testing the implemented algorithms and trying to predict how they will behave, we will use \textit{ReFrame HPC}\cite*{ReFrame}.
+ReFrame is a robust framework that allows to focus only on the algorithm by isolating the running code from the system's complexity.
+It distinguishes between "performance by simulation step" and "performance by number of task", which are two unavoidable criteria when talking about HPC.
+But for us, the most interesting feature is its ability to simulate exascale performance with regressions tests.
+
+The algorithms we want to test will be from the \textit{Feel++}\cite*{Feelpp} library.
+This is a "Finite Element Embedded Library in C++". It is used for solving physical problems, up to dimension 3,
+through the resolution op partial differential equations employing continuous or discontinuous Galerkin methods.
+\newpage
+For reporting the results, we will use \textit{Antora}\cite*{Antora}. Antora gives the opportunity to publish documentation on the web.
+The documentation needs to be written in \textit{AsciiDoc}. Once it's done, \textit{AsciiDoctor} will handle the conversion to \textit{html}
+for responsiveness and browser compatibility.
+\textit{AsciiDoc} offers the possibility to call python function directly within its file. With this approach, we will be able to provide dynamic content,
+like graphs for example, for the documentation.
+
+The \textit{Plotly}\cite*{Plotly} library will be used for data visualization. This graphing library offers various methods for displaying data.
+what's particularly notable for our purposes is its interactivity. Together with its versatility, it perfectly fits the project's needs
+regarding dynamism.
+
+
+\section{Process}
+Resources for publishing new documentation are already available in this repository. We need to adapt them to our new testsuite.\\
+However, achieving this requires to integrate the previously mentioned tools in the following process:
+
+\begin{figure}[h]
+    \centering
+    \includegraphics[width=0.8\textwidth]{../../illustrations/process.png}
+\end{figure}
+
+\newpage
+\begin{enumerate}
+    \item The first step of this cycle is of course to develop. This is the only manner to look forward regarding performances.
+    Pushing or merging new test reports should also launch a new process.
+    \item The workflow should automatically launch the specified tests using Reframe. The results will be transmitted in a .json file.
+    If a code doesn't pass all the tests, a warning will appear in order to inform the dev team they have performance decline regarding the new code. In this case, the process will automatically stop.
+    \item At first, we will extract the relative run reports data with a Python script. Then, the Python library \textit{Jinja2}\cite*{Jinja2} will generate an .adoc file containing plotting methods.
+    \item The last step to convert the created .adoc file into .html for generating the website. As I mentioned before, this job is done by Antora together with AsciiDoctor.
+\end{enumerate}
+
+It's apparent that this task involves significant repetition. Therefore, we want our process to work on the most autonomous way possible. This leads us immediately to our main objective.
+
+
+
+\section{Objectives}
+\begin{itemize}
+    \item Establish a \textbf{Continuous Integration/Continuous Deployment} workflow.
+    This means that every time a new test is done and integrated into the repository main branch, a task will automatically be launched for updating the documentation site.
+    \item Improve the \textbf{dashboard presentation}. We need to enhance the data visualization and add explanations to it for a better comprehension of the given results.
+    \item Finding the appropriate values to analyse performances on a specific context can be difficult. Therefore, \textbf{representative tests} are essential for obtaining reliable results about the system behaviour.
+    \item Provide a \textbf{database} for easy access and retrieval of test results.
+    Currently, it is very difficult to perform clear data analysis based on different aggregations, as it requires manual searching.
+    Therefore, we want to develop an automated solution to select relevant fields.
+
+\end{itemize}
+
+
+\newpage
+\section{Advances}
+It took more time than I thought to get used to the different used tools and their environment.
+ReFrame offers a wide range of possibilities, but it was sometime challenging to find the appropriate option.
+
+However, now we can execute numerous test cases with just one command. This is precisely where Reframe's strength lies.
+Reframe operates with Python classes that are customizable through parameterization. For our purpose, we can for example parametrize the tests with 
+the number of tasks, the number of tasks per core, or even the cases we want to study.
+For our purpose, we started with treating the ThermalBridgesENISO10211 cases which are available in the data folder of the toolbox.
+
+For verifying the sanity of a test, Reframe provides "sanity functions." These functions run once the test is complete and can, for example, perform checks on the output data to ensure correctness. 
+This feature enhances the reliability of our testing process, helping to catch any anomalies or errors in our results.
+In order to avoid any regression in performance, we also have the possibility to provide references for each system configuration.
+If the framework detects that a performance is not within a certain range, then it will trigger a predefined action or alert.
+\newpage
+\section{Roadmap}
+
+
+\newpage
+\section{Bibliography}
+\nocite{*}
+\printbibliography[heading=none]
+
+\end{document}
\ No newline at end of file