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Since I am not using Windows I unfortunately can't compare. fstream is part of the standard library, so not sure why this should ever be missing in a default installation. Have you tried using gcc instead of clang? I assume gcc should be the default in mingw environment, so maybe that works better?!
On Msys2/Mingw64 environment using clang compiler,
...
Help shed a light, under what library package it's to get installed
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