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unified-schema-datausemodifiers.ttl
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unified-schema-datausemodifiers.ttl
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@prefix fg: <https://w3id.org/fair-genomes/ontology/> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix sio: <https://semanticscience.org/resource/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix ordo: <http://www.orpha.net/ORDO/> .
@prefix obo: <http://purl.obolibrary.org/obo/> .
@prefix dc: <http://purl.org/dc/elements/1.1/> .
fg:Signed_consent_Data_use_modifiers_clinical_care_use a obo:DUO_0000017;
rdfs:label "clinical care use";
dc:description "This data use modifier indicates that use is allowed for clinical use and care.";
rdfs:isDefinedBy obo:DUO_0000043 .
fg:Signed_consent_Data_use_modifiers_collaboration_required a obo:DUO_0000017;
rdfs:label "collaboration required";
dc:description "This requirement indicates that the requestor must agree to collaboration with the primary study investigator(s).";
rdfs:isDefinedBy obo:DUO_0000020 .
fg:Signed_consent_Data_use_modifiers_ethics_approval_required a obo:DUO_0000017;
rdfs:label "ethics approval required";
dc:description "This requirement indicates that the requestor must provide documentation of local IRB/ERB approval.";
rdfs:isDefinedBy obo:DUO_0000021 .
fg:Signed_consent_Data_use_modifiers_genetic_studies_only a obo:DUO_0000017;
rdfs:label "genetic studies only";
dc:description "This data use limitation indicates that use is limited to genetic studies only (i.e., no phenotype-only research)";
rdfs:isDefinedBy obo:DUO_0000016 .
fg:Signed_consent_Data_use_modifiers_geographical_restriction a obo:DUO_0000017;
rdfs:label "geographical restriction";
dc:description "This should be coupled with an ontology term describing the geographical location the restriction applies to.";
rdfs:isDefinedBy obo:DUO_0000022 .
fg:Signed_consent_Data_use_modifiers_institution_specific_restriction a obo:DUO_0000017;
rdfs:label "institution specific restriction";
dc:description "This requirement indicates that use is limited to use within an approved institution.";
rdfs:isDefinedBy obo:DUO_0000028 .
fg:Signed_consent_Data_use_modifiers_no_general_methods_research a obo:DUO_0000017;
rdfs:label "no general methods research";
dc:description "This data use limitation indicates that use includes methods development research(e.g., development of software or algorithms) only within the bounds of other use limitations.";
rdfs:isDefinedBy obo:DUO_0000015 .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_not_for_profit,_non_commercial_use_only>
a obo:DUO_0000017;
rdfs:label "not for profit, non commercial use only";
dc:description "This requirement indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.";
rdfs:isDefinedBy obo:DUO_0000018 .
fg:Signed_consent_Data_use_modifiers_non-commercial_use_only a obo:DUO_0000017;
rdfs:label "non-commercial use only";
dc:description "This indicates that data can be used by commercial organisations for research purposes, but not commercial purposes.";
rdfs:isDefinedBy obo:DUO_0000046 .
fg:Signed_consent_Data_use_modifiers_not_for_profit_organisation_use_only a obo:DUO_0000017;
rdfs:label "not for profit organisation use only";
dc:description "This data use modifier indicates that use of the data is limited to not-for-profit organizations.";
rdfs:isDefinedBy obo:DUO_0000045 .
fg:Signed_consent_Data_use_modifiers_population_origins_or_ancestry_research_prohibited
a obo:DUO_0000017;
rdfs:label "population origins or ancestry research prohibited";
dc:description "This data use modifier indicates use for purposes of population, origin, or ancestry research is prohibited.";
rdfs:isDefinedBy obo:DUO_0000044 .
fg:Signed_consent_Data_use_modifiers_project_specific_restriction a obo:DUO_0000017;
rdfs:label "project specific restriction";
dc:description "This data use modifier indicates that use is limited to use within an approved project.";
rdfs:isDefinedBy obo:DUO_0000027 .
fg:Signed_consent_Data_use_modifiers_publication_moratorium a obo:DUO_0000017;
rdfs:label "publication moratorium";
dc:description "This requirement indicates that requestor agrees not to publish results of studies until a specific date.";
rdfs:isDefinedBy obo:DUO_0000024 .
fg:Signed_consent_Data_use_modifiers_publication_required a obo:DUO_0000017;
rdfs:label "publication required";
dc:description "This requirement indicates that requestor agrees to make results of studies using the data available to the larger scientific community.";
rdfs:isDefinedBy obo:DUO_0000019 .
fg:Signed_consent_Data_use_modifiers_research_specific_restrictions a obo:DUO_0000017;
rdfs:label "research specific restrictions";
dc:description "This data use limitation indicates that use is limited to studies of a certain research type.";
rdfs:isDefinedBy obo:DUO_0000012 .
fg:Signed_consent_Data_use_modifiers_return_to_database_or_resource a obo:DUO_0000017;
rdfs:label "return to database or resource";
dc:description "This requirement indicates that the requestor must return derived/enriched data to the database/resource.";
rdfs:isDefinedBy obo:DUO_0000029 .
fg:Signed_consent_Data_use_modifiers_time_limit_on_use a obo:DUO_0000017;
rdfs:label "time limit on use";
dc:description "This requirement indicates that use is approved for a specific number of months.";
rdfs:isDefinedBy obo:DUO_0000025 .
fg:Signed_consent_Data_use_modifiers_user_specific_restriction a obo:DUO_0000017;
rdfs:label "user specific restriction";
dc:description "This requirement indicates that use is limited to use by approved users.";
rdfs:isDefinedBy obo:DUO_0000026 .
fg:Signed_consent_Data_use_modifiers_research_with_incidental_findings_permitted_with_obligation_to_report
a obo:DUO_0000017;
rdfs:label "research with incidental findings permitted with obligation to report";
dc:description "Research with a chance of incidental findings is permitted with an obligation to report incidental findings.";
rdfs:isDefinedBy <https://w3id.org/fair-genomes/resource/FG_0000740> .
fg:Signed_consent_Data_use_modifiers_research_with_incidental_findings_permitted_without_obligation_to_report
a obo:DUO_0000017;
rdfs:label "research with incidental findings permitted without obligation to report";
dc:description "Research with a chance of incidental findings is permitted without an obligation to report incidental findings.";
rdfs:isDefinedBy <https://w3id.org/fair-genomes/resource/FG_0000741> .
fg:Signed_consent_Data_use_modifiers_research_with_incidental_findings_prohibited
a obo:DUO_0000017;
rdfs:label "research with incidental findings prohibited";
dc:description "Research with a chance of incidental findings is prohibited.";
rdfs:isDefinedBy <https://w3id.org/fair-genomes/resource/FG_0000742> .
fg:Signed_consent_Data_use_modifiers_equivalent_legal_data_protection_required a obo:DUO_0000017;
rdfs:label "equivalent legal data protection required";
dc:description "Equivalent legal data protection is required. This term should be combined with a list of relevant data protection laws requirements.";
rdfs:isDefinedBy <https://w3id.org/fair-genomes/resource/FG_0000743> .
fg:Signed_consent_Data_use_modifiers_research_with_individual-level_linkage_prohibited
a obo:DUO_0000017;
rdfs:label "research with individual-level linkage prohibited";
dc:description "This requirement indicates that use of the data is limited to studies in which different data types about the same individual from different datasets are not combined. Linking data is usually used to compile epidemiological data, leading to a richer dataset. The logic of record linkage is that two or more items of information about a person recorded at different times, and perhaps in different places, may be of greater value when considered together than when either is considered alone. The potential risk is that the data subjects in the dataset become more identifiable.";
rdfs:isDefinedBy obo:NCIT_C15424 .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_NoInformation_(NI,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "NoInformation (NI, nullflavor)";
dc:description "The value is exceptional (missing, omitted, incomplete, improper). No information as to the reason for being an exceptional value is provided. This is the most general exceptional value. It is also the default exceptional value.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#NI> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Invalid_(INV,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Invalid (INV, nullflavor)";
dc:description "The value as represented in the instance is not a member of the set of permitted data values in the constrained value domain of a variable.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#INV> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Derived_(DER,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Derived (DER, nullflavor)";
dc:description "An actual value may exist, but it must be derived from the provided information (usually an EXPR generic data type extension will be used to convey the derivation expression .";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#DER> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Other_(OTH,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Other (OTH, nullflavor)";
dc:description "The actual value is not a member of the set of permitted data values in the constrained value domain of a variable.The actual value is not a member of the set of permitted data values in the constrained value domain of a variable. (e.g., concept not provided by required code system).";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#OTH> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Negative_infinity_(NINF,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Negative infinity (NINF, nullflavor)";
dc:description "Negative infinity of numbers.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#NINF> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Positive_infinity_(PINF,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Positive infinity (PINF, nullflavor)";
dc:description "Positive infinity of numbers.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#PINF> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Un-encoded_(UNC,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Un-encoded (UNC, nullflavor)";
dc:description "The actual value has not yet been encoded within the approved value domain.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#UNC> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Masked_(MSK,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Masked (MSK, nullflavor)";
dc:description "There is information on this item available but it has not been provided by the sender due to security, privacy or other reasons. There may be an alternate mechanism for gaining access to this information.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#MSK> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Not_applicable_(NA,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Not applicable (NA, nullflavor)";
dc:description "Known to have no proper value (e.g., last menstrual period for a male).";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#NA> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Unknown_(UNK,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Unknown (UNK, nullflavor)";
dc:description "A proper value is applicable, but not known.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#UNK> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Asked_but_unknown_(ASKU,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Asked but unknown (ASKU, nullflavor)";
dc:description "Information was sought but not found (e.g., patient was asked but didn't know)";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#ASKU> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Temporarily_unavailable_(NAV,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Temporarily unavailable (NAV, nullflavor)";
dc:description "Information is not available at this time but it is expected that it will be available later.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#NAV> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Not_asked_(NASK,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Not asked (NASK, nullflavor)";
dc:description "This information has not been sought. (e.g., patient was not asked)";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#NASK> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Not_available_(NAVU,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Not available (NAVU, nullflavor)";
dc:description "Information is not available at this time (with no expectation regarding whether it will or will not be available in the future).";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#NAVU> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Sufficient_quantity_(QS,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Sufficient quantity (QS, nullflavor)";
dc:description "The specific quantity is not known, but is known to be non-zero and is not specified because it makes up the bulk of the material. e.g. 'Add 10mg of ingredient X, 50mg of ingredient Y, and sufficient quantity of water to 100mL.' The null flavor would be used to express the quantity of water.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#QS> .
<https://w3id.org/fair-genomes/ontology/Signed_consent_Data_use_modifiers_Trace_(TRC,_nullflavor)>
a obo:DUO_0000017;
rdfs:label "Trace (TRC, nullflavor)";
dc:description "The content is greater than zero, but too small to be quantified.";
rdfs:isDefinedBy <http://terminology.hl7.org/CodeSystem/v3-NullFlavor#TRC> .